RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CHGAP10645 457 aaKnown RBP14.48□□□□□ -0.09
VPS13C-208ENST00000559119 FAM205CA6NFA0 338 aa14.43□□□□□ -0.1
VPS13C-208ENST00000559119 HOXB1P14653 301 aaPredicted RBP14.43□□□□□ -0.1
VPS13C-208ENST00000559119 HS3ST6Q96QI5 342 aa14.4□□□□□ -0.1
VPS13C-208ENST00000559119 PPP1R37O75864 691 aa14.38□□□□□ -0.11
VPS13C-208ENST00000559119 ZSWIM6Q9HCJ5 1215 aa14.38□□□□□ -0.11
VPS13C-208ENST00000559119 C2orf72A6NCS6 295 aa14.35□□□□□ -0.11
VPS13C-208ENST00000559119 TMC2Q8TDI7 906 aa14.35□□□□□ -0.11
VPS13C-208ENST00000559119 ERBB3P21860 1342 aa14.35□□□□□ -0.11
VPS13C-208ENST00000559119 POTEB3A0JP26 581 aa14.33□□□□□ -0.12
VPS13C-208ENST00000559119 KIF3CO14782 793 aa14.33□□□□□ -0.12
VPS13C-208ENST00000559119 POTEBQ6S5H4 581 aa14.33□□□□□ -0.12
VPS13C-208ENST00000559119 DCAF8L2P0C7V8 631 aa14.3□□□□□ -0.12
VPS13C-208ENST00000559119 GPR153Q6NV75 609 aa14.3□□□□□ -0.12
VPS13C-208ENST00000559119 DNAJC5Q9H3Z4 198 aa14.3□□□□□ -0.12
VPS13C-208ENST00000559119 RYDENQ9NUL5 291 aaKnown RBP14.29□□□□□ -0.12
VPS13C-208ENST00000559119 ARSIQ5FYB1 569 aa14.28□□□□□ -0.12
VPS13C-208ENST00000559119 NKX1-1Q15270 411 aaPredicted RBP14.27□□□□□ -0.13
VPS13C-208ENST00000559119 VARS2Q5ST30 1063 aaKnown RBP14.25□□□□□ -0.13
VPS13C-208ENST00000559119 KRTAP3-3Q9BYR6 98 aa14.22□□□□□ -0.13
VPS13C-208ENST00000559119 KRTAP3-2Q9BYR7 98 aa14.22□□□□□ -0.13
VPS13C-208ENST00000559119 SPNS2Q8IVW8 549 aa14.21□□□□□ -0.13
VPS13C-208ENST00000559119 KHSRPQ92945 711 aaKnown RBP eCLIP14.2□□□□□ -0.14
VPS13C-208ENST00000559119 SLC34A2O95436 690 aa14.17□□□□□ -0.14
VPS13C-208ENST00000559119 GPHNQ9NQX3 736 aaPredicted RBP14.16□□□□□ -0.14
VPS13C-208ENST00000559119 PCDHGA4Q9Y5G9 962 aa14.15□□□□□ -0.14
VPS13C-208ENST00000559119 ZNF316A6NFI3 1004 aaPredicted RBP14.14□□□□□ -0.15
VPS13C-208ENST00000559119 MMRN1Q13201 1228 aa14.14□□□□□ -0.15
VPS13C-208ENST00000559119 NUDT7P0C024 238 aa14.13□□□□□ -0.15
VPS13C-208ENST00000559119 FOXK1P85037 733 aa14.13□□□□□ -0.15
VPS13C-208ENST00000559119 ZNF687Q8N1G0 1237 aa14.13□□□□□ -0.15
VPS13C-208ENST00000559119 PLPP6Q8IY26 295 aa14.12□□□□□ -0.15
VPS13C-208ENST00000559119 GTPBP6O43824 516 aaPredicted RBP14.08□□□□□ -0.16
VPS13C-208ENST00000559119 DSG2Q14126 1118 aa14.08□□□□□ -0.16
VPS13C-208ENST00000559119 LHX6Q9UPM6 363 aa14.05□□□□□ -0.16
VPS13C-208ENST00000559119 PTCD2Q8WV60 388 aaKnown RBP14.04□□□□□ -0.16
VPS13C-208ENST00000559119 TBC1D12O60347 775 aa14.01□□□□□ -0.17
VPS13C-208ENST00000559119 PDE4AP27815 886 aa14.01□□□□□ -0.17
VPS13C-208ENST00000559119 CRISPLD2Q9H0B8 497 aa14.01□□□□□ -0.17
VPS13C-208ENST00000559119 AMER1Q5JTC6 1135 aaPredicted RBP13.99□□□□□ -0.17
VPS13C-208ENST00000559119 PPP1R15BQ5SWA1 713 aa13.97□□□□□ -0.17
VPS13C-208ENST00000559119 PSDA5PKW4 1024 aaPredicted RBP13.96□□□□□ -0.17
VPS13C-208ENST00000559119 NCKAP5LQ9HCH0 1330 aa13.95□□□□□ -0.18
VPS13C-208ENST00000559119 PBX2P40425 430 aa13.94□□□□□ -0.18
VPS13C-208ENST00000559119 ANKRD13DQ6ZTN6 518 aa13.94□□□□□ -0.18
VPS13C-208ENST00000559119 KDM4FA0A1W2PPD8 638 aa13.92□□□□□ -0.18
VPS13C-208ENST00000559119 UPF1Q92900 1129 aaKnown RBP eCLIP13.92□□□□□ -0.18
VPS13C-208ENST00000559119 LARP6Q9BRS8 491 aaKnown RBP13.92□□□□□ -0.18
VPS13C-208ENST00000559119 LSM11P83369 360 aaKnown RBP eCLIP13.91□□□□□ -0.18
VPS13C-208ENST00000559119 OXER1Q8TDS5 423 aa13.9□□□□□ -0.18
VPS13C-208ENST00000559119 BBXQ8WY36 941 aaPredicted RBP13.89□□□□□ -0.19
VPS13C-208ENST00000559119 DDX27Q96GQ7 796 aaKnown RBP13.89□□□□□ -0.19
VPS13C-208ENST00000559119 MYT1LQ9UL68 1186 aa13.88□□□□□ -0.19
VPS13C-208ENST00000559119 AXIN2Q9Y2T1 843 aa13.88□□□□□ -0.19
VPS13C-208ENST00000559119 PTGER2P43116 358 aa13.87□□□□□ -0.19
VPS13C-208ENST00000559119 RTN4Q9NQC3 1192 aaKnown RBP13.87□□□□□ -0.19
VPS13C-208ENST00000559119 PPP4R3BQ5MIZ7 849 aa13.86□□□□□ -0.19
VPS13C-208ENST00000559119 RNF166Q96A37 237 aaPredicted RBP13.86□□□□□ -0.19
VPS13C-208ENST00000559119 ARHGAP33O14559 1287 aa13.84□□□□□ -0.19
VPS13C-208ENST00000559119 POTEEQ6S8J3 1075 aa13.84□□□□□ -0.19
VPS13C-208ENST00000559119 MFSD10Q14728 455 aa13.82□□□□□ -0.2
VPS13C-208ENST00000559119 CADPS2Q86UW7 1296 aa13.81□□□□□ -0.2
VPS13C-208ENST00000559119 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.79□□□□□ -0.2
VPS13C-208ENST00000559119 KCNH8Q96L42 1107 aa13.77□□□□□ -0.21
VPS13C-208ENST00000559119 MAP3K9P80192 1104 aa13.76□□□□□ -0.21
VPS13C-208ENST00000559119 ZNF454Q8N9F8 522 aa13.76□□□□□ -0.21
VPS13C-208ENST00000559119 SPRYD3Q8NCJ5 442 aa13.76□□□□□ -0.21
VPS13C-208ENST00000559119 EVI5O60447 810 aa13.75□□□□□ -0.21
VPS13C-208ENST00000559119 PSEN2P49810 448 aa13.75□□□□□ -0.21
VPS13C-208ENST00000559119 ADGRD1Q6QNK2 874 aa13.73□□□□□ -0.21
VPS13C-208ENST00000559119 DMRTA1Q5VZB9 504 aa13.71□□□□□ -0.21
VPS13C-208ENST00000559119 KCNK17Q96T54 332 aa13.71□□□□□ -0.21
VPS13C-208ENST00000559119 ANO8Q9HCE9 1232 aaPredicted RBP13.71□□□□□ -0.21
VPS13C-208ENST00000559119 EMILIN3Q9NT22 766 aa13.7□□□□□ -0.22
VPS13C-208ENST00000559119 TK2O00142 265 aa13.69□□□□□ -0.22
VPS13C-208ENST00000559119 FOSBP53539 338 aa13.69□□□□□ -0.22
VPS13C-208ENST00000559119 JPH4Q96JJ6 628 aa13.67□□□□□ -0.22
VPS13C-208ENST00000559119 CFAP44Q96MT7 982 aa13.66□□□□□ -0.22
VPS13C-208ENST00000559119 PAXIP1Q6ZW49 1069 aaPredicted RBP13.65□□□□□ -0.22
VPS13C-208ENST00000559119 BCL2L12Q9HB09 334 aa13.65□□□□□ -0.22
VPS13C-208ENST00000559119 STAC3Q96MF2 364 aa13.64□□□□□ -0.23
VPS13C-208ENST00000559119 PTPREP23469 700 aa13.63□□□□□ -0.23
VPS13C-208ENST00000559119 ZDHHC16Q969W1 377 aa13.63□□□□□ -0.23
VPS13C-208ENST00000559119 CAMK2BQ13554 666 aa13.62□□□□□ -0.23
VPS13C-208ENST00000559119 HRO43593 1189 aa13.6□□□□□ -0.23
VPS13C-208ENST00000559119 DPYSL4O14531 572 aa13.57□□□□□ -0.24
VPS13C-208ENST00000559119 ADAM33Q9BZ11 813 aa13.57□□□□□ -0.24
VPS13C-208ENST00000559119 VPS9D1Q9Y2B5 631 aa13.57□□□□□ -0.24
VPS13C-208ENST00000559119 PCDHGA10Q9Y5H3 936 aa13.55□□□□□ -0.24
VPS13C-208ENST00000559119 SLC4A5Q9BY07 1137 aa13.54□□□□□ -0.24
VPS13C-208ENST00000559119 HCSTQ9UBK5 93 aa13.53□□□□□ -0.24
VPS13C-208ENST00000559119 PHF14O94880 888 aa13.52□□□□□ -0.25
VPS13C-208ENST00000559119 TYW1BQ6NUM6 668 aa13.52□□□□□ -0.25
VPS13C-208ENST00000559119 FBXW7Q969H0 707 aa13.51□□□□□ -0.25
VPS13C-208ENST00000559119 WDR70Q9NW82 654 aa13.51□□□□□ -0.25
VPS13C-208ENST00000559119 KCTD12Q96CX2 325 aaKnown RBP13.5□□□□□ -0.25
VPS13C-208ENST00000559119 ZBED2Q9BTP6 218 aa13.5□□□□□ -0.25
VPS13C-208ENST00000559119 EPAS1Q99814 870 aa13.47□□□□□ -0.25
VPS13C-208ENST00000559119 PPP1R3GB7ZBB8 358 aa13.46□□□□□ -0.25
VPS13C-208ENST00000559119 E2F4Q16254 413 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms