RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 BOLA1Q9Y3E2 137 aa8.46□□□□□ -1.06
SPG11-211ENST00000558561 L3MBTL3Q96JM7 780 aaPredicted RBP8.44□□□□□ -1.06
SPG11-211ENST00000558561 TMEM121BQ9BXQ6 578 aaPredicted RBP8.44□□□□□ -1.06
SPG11-211ENST00000558561 G3V3G9 751 aa8.42□□□□□ -1.06
SPG11-211ENST00000558561 NCKAP5LQ9HCH0 1330 aa8.41□□□□□ -1.06
SPG11-211ENST00000558561 POTEB2H3BUK9 544 aa8.4□□□□□ -1.06
SPG11-211ENST00000558561 BICRAQ9NZM4 1560 aa8.39□□□□□ -1.07
SPG11-211ENST00000558561 POTEJP0CG39 1038 aa8.39□□□□□ -1.07
SPG11-211ENST00000558561 LARP6Q9BRS8 491 aaKnown RBP8.39□□□□□ -1.07
SPG11-211ENST00000558561 MYO15BQ96JP2 1530 aa8.39□□□□□ -1.07
SPG11-211ENST00000558561 CRISPLD2Q9H0B8 497 aa8.38□□□□□ -1.07
SPG11-211ENST00000558561 PDE4AP27815 886 aa8.37□□□□□ -1.07
SPG11-211ENST00000558561 DCAF1Q9Y4B6 1507 aa8.37□□□□□ -1.07
SPG11-211ENST00000558561 TMEM92Q6UXU6 159 aa8.36□□□□□ -1.07
SPG11-211ENST00000558561 WDR70Q9NW82 654 aa8.36□□□□□ -1.07
SPG11-211ENST00000558561 GPHNQ9NQX3 736 aaPredicted RBP8.35□□□□□ -1.07
SPG11-211ENST00000558561 SCRIBQ14160 1630 aa8.35□□□□□ -1.07
SPG11-211ENST00000558561 C2orf72A6NCS6 295 aa8.33□□□□□ -1.08
SPG11-211ENST00000558561 C3orf67Q6ZVT6 689 aa8.33□□□□□ -1.08
SPG11-211ENST00000558561 TMC2Q8TDI7 906 aa8.33□□□□□ -1.08
SPG11-211ENST00000558561 KIF3CO14782 793 aa8.32□□□□□ -1.08
SPG11-211ENST00000558561 MFSD10Q14728 455 aa8.32□□□□□ -1.08
SPG11-211ENST00000558561 DDX27Q96GQ7 796 aaKnown RBP8.32□□□□□ -1.08
SPG11-211ENST00000558561 DSG2Q14126 1118 aa8.31□□□□□ -1.08
SPG11-211ENST00000558561 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.31□□□□□ -1.08
SPG11-211ENST00000558561 PPP1R15BQ5SWA1 713 aa8.29□□□□□ -1.08
SPG11-211ENST00000558561 FOXK1P85037 733 aa8.28□□□□□ -1.08
SPG11-211ENST00000558561 E2F4Q16254 413 aa8.28□□□□□ -1.08
SPG11-211ENST00000558561 PLPP6Q8IY26 295 aa8.27□□□□□ -1.09
SPG11-211ENST00000558561 KCNV2Q8TDN2 545 aa8.27□□□□□ -1.09
SPG11-211ENST00000558561 MAMSTRQ6ZN01 415 aa8.25□□□□□ -1.09
SPG11-211ENST00000558561 SCUBE2Q9NQ36 999 aa8.25□□□□□ -1.09
SPG11-211ENST00000558561 CAMK2BQ13554 666 aa8.24□□□□□ -1.09
SPG11-211ENST00000558561 SLAIN1Q8ND83 568 aa8.24□□□□□ -1.09
SPG11-211ENST00000558561 SHROOM4Q9ULL8 1493 aa8.24□□□□□ -1.09
SPG11-211ENST00000558561 OTUD5Q96G74 571 aa8.23□□□□□ -1.09
SPG11-211ENST00000558561 P3H3Q8IVL6 736 aa8.22□□□□□ -1.09
SPG11-211ENST00000558561 EMILIN3Q9NT22 766 aa8.22□□□□□ -1.09
SPG11-211ENST00000558561 ARHGEF1Q92888 912 aaKnown RBP8.19□□□□□ -1.1
SPG11-211ENST00000558561 BCANQ96GW7 911 aa8.19□□□□□ -1.1
SPG11-211ENST00000558561 UPF1Q92900 1129 aaKnown RBP eCLIP8.18□□□□□ -1.1
SPG11-211ENST00000558561 DPYSL4O14531 572 aa8.17□□□□□ -1.1
SPG11-211ENST00000558561 NBR1Q14596 966 aa8.16□□□□□ -1.1
SPG11-211ENST00000558561 OXER1Q8TDS5 423 aa8.16□□□□□ -1.1
SPG11-211ENST00000558561 ARIH1Q9Y4X5 557 aaPredicted RBP8.16□□□□□ -1.1
SPG11-211ENST00000558561 HOXB3P14651 431 aaPredicted RBP8.14□□□□□ -1.11
SPG11-211ENST00000558561 MAP3K9P80192 1104 aa8.14□□□□□ -1.11
SPG11-211ENST00000558561 CC2D2AQ9P2K1 1620 aa8.14□□□□□ -1.11
SPG11-211ENST00000558561 SLC34A2O95436 690 aa8.13□□□□□ -1.11
SPG11-211ENST00000558561 PTCD2Q8WV60 388 aaKnown RBP8.13□□□□□ -1.11
SPG11-211ENST00000558561 SEMA3EO15041 775 aa8.12□□□□□ -1.11
SPG11-211ENST00000558561 EIF4G1Q04637 1599 aaKnown RBP8.12□□□□□ -1.11
SPG11-211ENST00000558561 CECR2Q9BXF3 1484 aa8.11□□□□□ -1.11
SPG11-211ENST00000558561 PCDHGA4Q9Y5G9 962 aa8.1□□□□□ -1.11
SPG11-211ENST00000558561 TBC1D12O60347 775 aa8.09□□□□□ -1.11
SPG11-211ENST00000558561 DOK7Q18PE1 504 aa8.09□□□□□ -1.11
SPG11-211ENST00000558561 KHSRPQ92945 711 aaKnown RBP eCLIP8.09□□□□□ -1.111e-7■■□□□ 13.6
SPG11-211ENST00000558561 SPDYE16A6NNV3 312 aaPredicted RBP8.08□□□□□ -1.12
SPG11-211ENST00000558561 PDIA6Q15084 440 aa8.08□□□□□ -1.12
SPG11-211ENST00000558561 ARSIQ5FYB1 569 aa8.08□□□□□ -1.12
SPG11-211ENST00000558561 SNPHO15079 494 aa8.07□□□□□ -1.12
SPG11-211ENST00000558561 EVI5O60447 810 aa8.07□□□□□ -1.12
SPG11-211ENST00000558561 ZNF710Q8N1W2 664 aa8.07□□□□□ -1.12
SPG11-211ENST00000558561 TESPA1A2RU30 521 aaPredicted RBP8.06□□□□□ -1.12
SPG11-211ENST00000558561 MLLT3P42568 568 aaPredicted RBP8.06□□□□□ -1.12
SPG11-211ENST00000558561 GPR153Q6NV75 609 aa8.06□□□□□ -1.12
SPG11-211ENST00000558561 KDM4FA0A1W2PPD8 638 aa8.04□□□□□ -1.12
SPG11-211ENST00000558561 RIMBP2O15034 1052 aa8.04□□□□□ -1.12
SPG11-211ENST00000558561 ANO8Q9HCE9 1232 aaPredicted RBP8.04□□□□□ -1.12
SPG11-211ENST00000558561 NUDT7P0C024 238 aa8.03□□□□□ -1.12
SPG11-211ENST00000558561 ZSWIM6Q9HCJ5 1215 aa8.03□□□□□ -1.12
SPG11-211ENST00000558561 GRXCR2A6NFK2 248 aa8.02□□□□□ -1.13
SPG11-211ENST00000558561 DDX12PQ92771 950 aa8.02□□□□□ -1.13
SPG11-211ENST00000558561 PTGER2P43116 358 aa8.01□□□□□ -1.13
SPG11-211ENST00000558561 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.01□□□□□ -1.13
SPG11-211ENST00000558561 FAM163AQ96GL9 167 aaPredicted RBP8□□□□□ -1.13
SPG11-211ENST00000558561 HOXB1P14653 301 aaPredicted RBP7.99□□□□□ -1.13
SPG11-211ENST00000558561 ZNF316A6NFI3 1004 aaPredicted RBP7.98□□□□□ -1.13
SPG11-211ENST00000558561 ST18O60284 1047 aa7.98□□□□□ -1.13
SPG11-211ENST00000558561 SMYD5Q6GMV2 418 aa7.98□□□□□ -1.13
SPG11-211ENST00000558561 OSBPP22059 807 aa7.97□□□□□ -1.13
SPG11-211ENST00000558561 PRIM1P49642 420 aaKnown RBP7.97□□□□□ -1.13
SPG11-211ENST00000558561 RBM26Q5T8P6 1007 aaKnown RBP7.97□□□□□ -1.13
SPG11-211ENST00000558561 LMOD2Q6P5Q4 547 aa7.97□□□□□ -1.13
SPG11-211ENST00000558561 LHX6Q9UPM6 363 aa7.97□□□□□ -1.13
SPG11-211ENST00000558561 POTEMA6NI47 508 aa7.96□□□□□ -1.14
SPG11-211ENST00000558561 TULP1O00294 542 aaPredicted RBP7.96□□□□□ -1.14
SPG11-211ENST00000558561 PCDHGA10Q9Y5H3 936 aa7.96□□□□□ -1.14
SPG11-211ENST00000558561 MROH2BQ7Z745 1585 aa7.96□□□□□ -1.14
SPG11-211ENST00000558561 PLSCR2Q9NRY7 297 aa7.95□□□□□ -1.14
SPG11-211ENST00000558561 ATAD2BQ9ULI0 1458 aa7.94□□□□□ -1.14
SPG11-211ENST00000558561 SMARCA4P51532 1647 aa7.94□□□□□ -1.14
SPG11-211ENST00000558561 PHF14O94880 888 aa7.94□□□□□ -1.14
SPG11-211ENST00000558561 PRKCSHP14314 528 aaPredicted RBP7.94□□□□□ -1.14
SPG11-211ENST00000558561 FOSBP53539 338 aa7.94□□□□□ -1.14
SPG11-211ENST00000558561 POTEGQ6S5H5 508 aa7.94□□□□□ -1.14
SPG11-211ENST00000558561 ZNF454Q8N9F8 522 aa7.94□□□□□ -1.14
SPG11-211ENST00000558561 MARVELD3Q96A59 401 aa7.94□□□□□ -1.14
SPG11-211ENST00000558561 TPRNQ4KMQ1 711 aa7.93□□□□□ -1.14
SPG11-211ENST00000558561 LCE2DQ5TA82 110 aaPredicted RBP7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms