RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 DDRGK1Q96HY6 314 aa6.58□□□□□ -1.36
TDP1-217ENST00000557782 ARID3CA6NKF2 412 aa6.57□□□□□ -1.36
TDP1-217ENST00000557782 MLLT3P42568 568 aaPredicted RBP6.57□□□□□ -1.36
TDP1-217ENST00000557782 FAM117AQ9C073 453 aa6.55□□□□□ -1.36
TDP1-217ENST00000557782 CCDC61Q9Y6R9 512 aa6.55□□□□□ -1.36
TDP1-217ENST00000557782 SPDYE16A6NNV3 312 aaPredicted RBP6.52□□□□□ -1.37
TDP1-217ENST00000557782 MINK1Q8N4C8 1332 aaPredicted RBP6.51□□□□□ -1.37
TDP1-217ENST00000557782 IFNL1Q8IU54 200 aa6.51□□□□□ -1.37
TDP1-217ENST00000557782 PLEKHG3A1L390 1219 aa6.5□□□□□ -1.37
TDP1-217ENST00000557782 A6NJR5 290 aa6.5□□□□□ -1.37
TDP1-217ENST00000557782 PITPNM1O00562 1244 aa6.5□□□□□ -1.37
TDP1-217ENST00000557782 PAK3O75914 559 aaPredicted RBP6.5□□□□□ -1.37
TDP1-217ENST00000557782 PPP1R15BQ5SWA1 713 aa6.5□□□□□ -1.37
TDP1-217ENST00000557782 CCDC82Q8N4S0 544 aa6.5□□□□□ -1.37
TDP1-217ENST00000557782 GOPCQ9HD26 462 aa6.5□□□□□ -1.37
TDP1-217ENST00000557782 CHADLQ6NUI6 762 aa6.49□□□□□ -1.37
TDP1-217ENST00000557782 FARP1Q9Y4F1 1045 aaPredicted RBP6.49□□□□□ -1.37
TDP1-217ENST00000557782 TRAK2O60296 914 aa6.48□□□□□ -1.37
TDP1-217ENST00000557782 GOLGA2Q08379 1002 aa6.48□□□□□ -1.37
TDP1-217ENST00000557782 MAP2K5Q13163 448 aa6.48□□□□□ -1.37
TDP1-217ENST00000557782 PDIA6Q15084 440 aa6.48□□□□□ -1.37
TDP1-217ENST00000557782 AMHR2Q16671 573 aa6.48□□□□□ -1.37
TDP1-217ENST00000557782 CCDC102AQ96A19 550 aa6.48□□□□□ -1.37
TDP1-217ENST00000557782 MS4A4AQ96JQ5 239 aa6.48□□□□□ -1.37
TDP1-217ENST00000557782 DPYSL4O14531 572 aa6.47□□□□□ -1.37
TDP1-217ENST00000557782 GPR37O15354 613 aa6.47□□□□□ -1.37
TDP1-217ENST00000557782 ONECUT3O60422 494 aaPredicted RBP6.46□□□□□ -1.38
TDP1-217ENST00000557782 PARP9Q8IXQ6 854 aa6.46□□□□□ -1.38
TDP1-217ENST00000557782 PCMTD1Q96MG8 357 aaPredicted RBP6.46□□□□□ -1.38
TDP1-217ENST00000557782 MAP3K13O43283 966 aa6.45□□□□□ -1.38
TDP1-217ENST00000557782 NECTIN2Q92692 538 aa6.45□□□□□ -1.38
TDP1-217ENST00000557782 CLUAP1Q96AJ1 413 aa6.45□□□□□ -1.38
TDP1-217ENST00000557782 IRF6O14896 467 aa6.44□□□□□ -1.38
TDP1-217ENST00000557782 TTLL12Q14166 644 aaPredicted RBP6.44□□□□□ -1.38
TDP1-217ENST00000557782 KCTD17Q8N5Z5 321 aa6.44□□□□□ -1.38
TDP1-217ENST00000557782 GPHNQ9NQX3 736 aaPredicted RBP6.44□□□□□ -1.38
TDP1-217ENST00000557782 NUTM2FA1L443 756 aa6.43□□□□□ -1.38
TDP1-217ENST00000557782 CACNB1Q02641 598 aaPredicted RBP6.43□□□□□ -1.38
TDP1-217ENST00000557782 KIF12Q96FN5 646 aa6.43□□□□□ -1.38
TDP1-217ENST00000557782 TRAIPQ9BWF2 469 aa6.43□□□□□ -1.38
TDP1-217ENST00000557782 CCDC97Q96F63 343 aaPredicted RBP6.42□□□□□ -1.38
TDP1-217ENST00000557782 EMILIN3Q9NT22 766 aa6.42□□□□□ -1.38
TDP1-217ENST00000557782 GNPATO15228 680 aa6.41□□□□□ -1.38
TDP1-217ENST00000557782 HIC1Q14526 733 aa6.41□□□□□ -1.38
TDP1-217ENST00000557782 SERPINA10Q9UK55 444 aa6.41□□□□□ -1.38
TDP1-217ENST00000557782 RAD21O60216 631 aa6.4□□□□□ -1.38
TDP1-217ENST00000557782 MCM6Q14566 821 aa6.4□□□□□ -1.38
TDP1-217ENST00000557782 PROSER2Q86WR7 435 aaPredicted RBP6.4□□□□□ -1.38
TDP1-217ENST00000557782 GRXCR2A6NFK2 248 aa6.39□□□□□ -1.39
TDP1-217ENST00000557782 FCHSD2O94868 740 aa6.39□□□□□ -1.39
TDP1-217ENST00000557782 GIGYF2Q6Y7W6 1299 aaKnown RBP6.38□□□□□ -1.39
TDP1-217ENST00000557782 ZNF777Q9ULD5 760 aaPredicted RBP6.38□□□□□ -1.39
TDP1-217ENST00000557782 DSG2Q14126 1118 aa6.37□□□□□ -1.39
TDP1-217ENST00000557782 SH3D19Q5HYK7 790 aa6.37□□□□□ -1.39
TDP1-217ENST00000557782 AEBP1Q8IUX7 1158 aa6.37□□□□□ -1.39
TDP1-217ENST00000557782 PRKAR2AP13861 404 aaKnown RBP6.36□□□□□ -1.39
TDP1-217ENST00000557782 TMC2Q8TDI7 906 aa6.36□□□□□ -1.39
TDP1-217ENST00000557782 TMEM106CQ9BVX2 250 aa6.36□□□□□ -1.39
TDP1-217ENST00000557782 MS4A1P11836 297 aa6.35□□□□□ -1.39
TDP1-217ENST00000557782 MAP3K9P80192 1104 aa6.35□□□□□ -1.39
TDP1-217ENST00000557782 FOXK1P85037 733 aa6.35□□□□□ -1.39
TDP1-217ENST00000557782 TMCO4Q5TGY1 634 aa6.34□□□□□ -1.39
TDP1-217ENST00000557782 ATP1B4Q9UN42 357 aaPredicted RBP6.34□□□□□ -1.39
TDP1-217ENST00000557782 FNBP4Q8N3X1 1017 aaPredicted RBP6.33□□□□□ -1.4
TDP1-217ENST00000557782 OSBPP22059 807 aa6.32□□□□□ -1.4
TDP1-217ENST00000557782 FECHP22830 423 aa6.32□□□□□ -1.4
TDP1-217ENST00000557782 SKIV2LQ15477 1246 aaKnown RBP6.32□□□□□ -1.4
TDP1-217ENST00000557782 CLCN1P35523 988 aa6.31□□□□□ -1.4
TDP1-217ENST00000557782 PDE4CQ08493 712 aa6.31□□□□□ -1.4
TDP1-217ENST00000557782 PLPP6Q8IY26 295 aa6.31□□□□□ -1.4
TDP1-217ENST00000557782 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.31□□□□□ -1.4
TDP1-217ENST00000557782 SPDYE5A6NIY4 337 aa6.3□□□□□ -1.4
TDP1-217ENST00000557782 RETREG2Q8NC44 543 aa6.3□□□□□ -1.4
TDP1-217ENST00000557782 POM121Q96HA1 1249 aa6.3□□□□□ -1.4
TDP1-217ENST00000557782 PTGER2P43116 358 aa6.29□□□□□ -1.4
TDP1-217ENST00000557782 POTEDQ86YR6 584 aa6.29□□□□□ -1.4
TDP1-217ENST00000557782 OXER1Q8TDS5 423 aa6.29□□□□□ -1.4
TDP1-217ENST00000557782 GPCPD1Q9NPB8 672 aa6.29□□□□□ -1.4
TDP1-217ENST00000557782 PLSCR2Q9NRY7 297 aa6.29□□□□□ -1.4
TDP1-217ENST00000557782 ZRANB1Q9UGI0 708 aa6.29□□□□□ -1.4
TDP1-217ENST00000557782 PATL2C9JE40 543 aaKnown RBP6.28□□□□□ -1.4
TDP1-217ENST00000557782 MFAP1P55081 439 aaKnown RBP6.28□□□□□ -1.4
TDP1-217ENST00000557782 PTGDRQ13258 359 aa6.28□□□□□ -1.4
TDP1-217ENST00000557782 ILDR1Q86SU0 546 aaPredicted RBP6.28□□□□□ -1.4
TDP1-217ENST00000557782 MICALL2Q8IY33 904 aa6.28□□□□□ -1.4
TDP1-217ENST00000557782 RGS22Q8NE09 1264 aa6.28□□□□□ -1.4
TDP1-217ENST00000557782 REPIN1Q9BWE0 567 aaKnown RBP6.28□□□□□ -1.4
TDP1-217ENST00000557782 ZNF330Q9Y3S2 320 aaPredicted RBP6.28□□□□□ -1.4
TDP1-217ENST00000557782 PPP1R15AO75807 674 aaPredicted RBP6.27□□□□□ -1.41
TDP1-217ENST00000557782 WWC1Q8IX03 1113 aa6.27□□□□□ -1.41
TDP1-217ENST00000557782 DDX12PQ92771 950 aa6.27□□□□□ -1.41
TDP1-217ENST00000557782 GZF1Q9H116 711 aaPredicted RBP6.27□□□□□ -1.41
TDP1-217ENST00000557782 MTMR7Q9Y216 660 aa6.27□□□□□ -1.41
TDP1-217ENST00000557782 COG6Q9Y2V7 657 aa6.27□□□□□ -1.41
TDP1-217ENST00000557782 ACIN1Q9UKV3 1341 aaKnown RBP6.26□□□□□ -1.41
TDP1-217ENST00000557782 TBC1D12O60347 775 aa6.26□□□□□ -1.41
TDP1-217ENST00000557782 SSTR3P32745 418 aaPredicted RBP6.26□□□□□ -1.41
TDP1-217ENST00000557782 BANK1Q8NDB2 785 aa6.26□□□□□ -1.41
TDP1-217ENST00000557782 PHF12Q96QT6 1004 aa6.26□□□□□ -1.41
TDP1-217ENST00000557782 TMUB1Q9BVT8 246 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms