RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 PLPPR3Q6T4P5 718 aa11.02□□□□□ -0.64
SYNE3-205ENST00000557275 MAP7D2Q96T17 732 aa11.02□□□□□ -0.65
SYNE3-205ENST00000557275 MTUS2Q5JR59 1369 aa11.02□□□□□ -0.65
SYNE3-205ENST00000557275 PPP1R15AO75807 674 aaPredicted RBP11.02□□□□□ -0.65
SYNE3-205ENST00000557275 TPRNQ4KMQ1 711 aa11.02□□□□□ -0.65
SYNE3-205ENST00000557275 SKOR2Q2VWA4 1001 aaPredicted RBP11.02□□□□□ -0.65
SYNE3-205ENST00000557275 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.01□□□□□ -0.65
SYNE3-205ENST00000557275 MYO6Q9UM54 1294 aa11.01□□□□□ -0.65
SYNE3-205ENST00000557275 KIF16BQ96L93 1317 aa11.01□□□□□ -0.65
SYNE3-205ENST00000557275 ZRSR2Q15696 482 aaKnown RBP11.01□□□□□ -0.65
SYNE3-205ENST00000557275 NEXNQ0ZGT2 675 aa11.01□□□□□ -0.65
SYNE3-205ENST00000557275 CCDC66A2RUB6 948 aa11□□□□□ -0.65
SYNE3-205ENST00000557275 RGS3P49796 1198 aa11□□□□□ -0.65
SYNE3-205ENST00000557275 ARGLU1Q9NWB6 273 aaPredicted RBP11□□□□□ -0.65
SYNE3-205ENST00000557275 CSRNP3Q8WYN3 585 aa11□□□□□ -0.65
SYNE3-205ENST00000557275 ZNF771Q7L3S4 317 aaPredicted RBP10.99□□□□□ -0.65
SYNE3-205ENST00000557275 ANKRD20A12PQ8NF67 263 aa10.99□□□□□ -0.65
SYNE3-205ENST00000557275 C14orf37Q86TY3 774 aa10.99□□□□□ -0.65
SYNE3-205ENST00000557275 RUFY1Q96T51 708 aa10.98□□□□□ -0.65
SYNE3-205ENST00000557275 TMX4Q9H1E5 349 aaPredicted RBP10.98□□□□□ -0.65
SYNE3-205ENST00000557275 HSP90B2PQ58FF3 399 aa10.98□□□□□ -0.65
SYNE3-205ENST00000557275 INCENPQ9NQS7 918 aa10.97□□□□□ -0.65
SYNE3-205ENST00000557275 HOOK1Q9UJC3 728 aaKnown RBP10.97□□□□□ -0.65
SYNE3-205ENST00000557275 GOLGA6L19H0YKK7 550 aa10.97□□□□□ -0.65
SYNE3-205ENST00000557275 ST18O60284 1047 aa10.97□□□□□ -0.65
SYNE3-205ENST00000557275 RASSF8Q8NHQ8 419 aa10.96□□□□□ -0.66
SYNE3-205ENST00000557275 KRI1Q8N9T8 703 aaKnown RBP10.95□□□□□ -0.66
SYNE3-205ENST00000557275 IRX6P78412 446 aaPredicted RBP10.95□□□□□ -0.66
SYNE3-205ENST00000557275 GOLGA6L7A0A1B0GV03 622 aa10.94□□□□□ -0.66
SYNE3-205ENST00000557275 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.94□□□□□ -0.66
SYNE3-205ENST00000557275 SUPT16HQ9Y5B9 1047 aaKnown RBP10.94□□□□□ -0.66
SYNE3-205ENST00000557275 TAF3Q5VWG9 929 aa10.93□□□□□ -0.66
SYNE3-205ENST00000557275 ERCC4Q92889 916 aaPredicted RBP10.93□□□□□ -0.66
SYNE3-205ENST00000557275 CCDC173Q0VFZ6 552 aa10.93□□□□□ -0.66
SYNE3-205ENST00000557275 DHX8Q14562 1220 aaKnown RBP10.93□□□□□ -0.66
SYNE3-205ENST00000557275 RWDD1Q9H446 243 aaPredicted RBP10.92□□□□□ -0.66
SYNE3-205ENST00000557275 TPD52L1Q16890 204 aaPredicted RBP10.92□□□□□ -0.66
SYNE3-205ENST00000557275 LRRFIP1Q32MZ4 808 aaKnown RBP10.92□□□□□ -0.66
SYNE3-205ENST00000557275 ISY1Q9ULR0 285 aaKnown RBP10.92□□□□□ -0.66
SYNE3-205ENST00000557275 NEFHP12036 1026 aa10.92□□□□□ -0.66
SYNE3-205ENST00000557275 EEA1Q15075 1411 aa10.92□□□□□ -0.66
SYNE3-205ENST00000557275 PHLDB1Q86UU1 1377 aa10.92□□□□□ -0.66
SYNE3-205ENST00000557275 USP8P40818 1118 aa10.92□□□□□ -0.66
SYNE3-205ENST00000557275 PMFBP1Q8TBY8 1022 aa10.92□□□□□ -0.66
SYNE3-205ENST00000557275 FRAT1Q92837 279 aaPredicted RBP10.92□□□□□ -0.66
SYNE3-205ENST00000557275 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.91□□□□□ -0.66
SYNE3-205ENST00000557275 H0YHG0 523 aa10.91□□□□□ -0.66
SYNE3-205ENST00000557275 KDM2AQ9Y2K7 1162 aa10.89□□□□□ -0.67
SYNE3-205ENST00000557275 MIER1Q8N108 512 aa10.89□□□□□ -0.67
SYNE3-205ENST00000557275 CCDC47Q96A33 483 aaKnown RBP10.89□□□□□ -0.67
SYNE3-205ENST00000557275 BECN2A8MW95 431 aa10.89□□□□□ -0.67
SYNE3-205ENST00000557275 HDGFP51858 240 aaKnown RBP10.88□□□□□ -0.67
SYNE3-205ENST00000557275 ANKRD18AQ8IVF6 992 aa10.87□□□□□ -0.67
SYNE3-205ENST00000557275 DIAPH3Q9NSV4 1193 aa10.87□□□□□ -0.67
SYNE3-205ENST00000557275 CCP110O43303 1012 aa10.87□□□□□ -0.67
SYNE3-205ENST00000557275 TAOK2Q9UL54 1235 aa10.87□□□□□ -0.67
SYNE3-205ENST00000557275 ARID3CA6NKF2 412 aa10.87□□□□□ -0.67
SYNE3-205ENST00000557275 RTF1Q92541 710 aaKnown RBP10.87□□□□□ -0.67
SYNE3-205ENST00000557275 TIMELESSQ9UNS1 1208 aa10.86□□□□□ -0.67
SYNE3-205ENST00000557275 DYDC1Q8WWB3 177 aa10.86□□□□□ -0.67
SYNE3-205ENST00000557275 SF3A1Q15459 793 aaKnown RBP10.86□□□□□ -0.67
SYNE3-205ENST00000557275 SPAG9O60271 1321 aaKnown RBP10.86□□□□□ -0.67
SYNE3-205ENST00000557275 PATL2C9JE40 543 aaKnown RBP10.85□□□□□ -0.67
SYNE3-205ENST00000557275 ZBTB7CA1YPR0 619 aa10.85□□□□□ -0.67
SYNE3-205ENST00000557275 ARID3AQ99856 593 aa10.85□□□□□ -0.67
SYNE3-205ENST00000557275 VSIG10Q8N0Z9 540 aa10.85□□□□□ -0.67
SYNE3-205ENST00000557275 CHMP7Q8WUX9 453 aaPredicted RBP10.85□□□□□ -0.67
SYNE3-205ENST00000557275 CCER2I3L3R5 266 aa10.85□□□□□ -0.67
SYNE3-205ENST00000557275 IPO9Q96P70 1041 aaKnown RBP10.85□□□□□ -0.67
SYNE3-205ENST00000557275 CCAR2Q8N163 923 aaKnown RBP10.85□□□□□ -0.67
SYNE3-205ENST00000557275 TCEAL9Q9UHQ7 104 aa10.85□□□□□ -0.67
SYNE3-205ENST00000557275 CARD11Q9BXL7 1154 aa10.84□□□□□ -0.67
SYNE3-205ENST00000557275 EIF3AQ14152 1382 aaKnown RBP10.84□□□□□ -0.67
SYNE3-205ENST00000557275 KANK1Q14678 1352 aa10.84□□□□□ -0.67
SYNE3-205ENST00000557275 P3H3Q8IVL6 736 aa10.84□□□□□ -0.67
SYNE3-205ENST00000557275 GZF1Q9H116 711 aaPredicted RBP10.84□□□□□ -0.67
SYNE3-205ENST00000557275 PES1O00541 588 aaKnown RBP10.84□□□□□ -0.67
SYNE3-205ENST00000557275 CLIP1P30622 1438 aa10.84□□□□□ -0.67
SYNE3-205ENST00000557275 NAT10Q9H0A0 1025 aaKnown RBP10.83□□□□□ -0.68
SYNE3-205ENST00000557275 LEKR1Q6ZMV7 388 aa10.83□□□□□ -0.68
SYNE3-205ENST00000557275 ODF2Q5BJF6 829 aa10.83□□□□□ -0.68
SYNE3-205ENST00000557275 CPLX2Q6PUV4 134 aaKnown RBP10.83□□□□□ -0.68
SYNE3-205ENST00000557275 WWC1Q8IX03 1113 aa10.83□□□□□ -0.68
SYNE3-205ENST00000557275 TXLNBQ8N3L3 684 aa10.83□□□□□ -0.68
SYNE3-205ENST00000557275 TMF1P82094 1093 aa10.82□□□□□ -0.68
SYNE3-205ENST00000557275 KTN1Q86UP2 1357 aaKnown RBP10.82□□□□□ -0.68
SYNE3-205ENST00000557275 H3BQV1 296 aa10.82□□□□□ -0.68
SYNE3-205ENST00000557275 EZRP15311 586 aaKnown RBP10.82□□□□□ -0.68
SYNE3-205ENST00000557275 IFFO2Q5TF58 517 aa10.82□□□□□ -0.68
SYNE3-205ENST00000557275 CAVIN1Q6NZI2 390 aaKnown RBP10.82□□□□□ -0.68
SYNE3-205ENST00000557275 GORABQ5T7V8 394 aa10.82□□□□□ -0.68
SYNE3-205ENST00000557275 HMGN5P82970 282 aaKnown RBP10.81□□□□□ -0.68
SYNE3-205ENST00000557275 FEZ1Q99689 392 aa10.81□□□□□ -0.68
SYNE3-205ENST00000557275 MARCH6O60337 910 aa10.81□□□□□ -0.68
SYNE3-205ENST00000557275 TSPYL1Q9H0U9 437 aa10.81□□□□□ -0.68
SYNE3-205ENST00000557275 POGKQ9P215 609 aa10.81□□□□□ -0.68
SYNE3-205ENST00000557275 AKAP17AQ02040 695 aaKnown RBP10.81□□□□□ -0.68
SYNE3-205ENST00000557275 HOMER1Q86YM7 354 aa10.81□□□□□ -0.68
SYNE3-205ENST00000557275 RBM19Q9Y4C8 960 aaKnown RBP10.8□□□□□ -0.68
SYNE3-205ENST00000557275 GOLGA6L10A6NI86 522 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms