RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 KCTD12Q96CX2 325 aaKnown RBP7.56□□□□□ -1.2
SLIRP-208ENST00000556956 IFFO2Q5TF58 517 aa7.54□□□□□ -1.2
SLIRP-208ENST00000556956 MICALL2Q8IY33 904 aa7.52□□□□□ -1.21
SLIRP-208ENST00000556956 HRO43593 1189 aa7.51□□□□□ -1.21
SLIRP-208ENST00000556956 PDAP1Q13442 181 aaKnown RBP7.49□□□□□ -1.21
SLIRP-208ENST00000556956 LHX6Q9UPM6 363 aa7.49□□□□□ -1.21
SLIRP-208ENST00000556956 NUDT7P0C024 238 aa7.48□□□□□ -1.21
SLIRP-208ENST00000556956 PTPN5P54829 565 aa7.47□□□□□ -1.21
SLIRP-208ENST00000556956 CHRM1P11229 460 aaPredicted RBP7.45□□□□□ -1.22
SLIRP-208ENST00000556956 DMRTA1Q5VZB9 504 aa7.45□□□□□ -1.22
SLIRP-208ENST00000556956 EHMT2Q96KQ7 1210 aa7.45□□□□□ -1.22
SLIRP-208ENST00000556956 ARHGAP33O14559 1287 aa7.44□□□□□ -1.22
SLIRP-208ENST00000556956 TK2O00142 265 aa7.42□□□□□ -1.22
SLIRP-208ENST00000556956 TRAF7Q6Q0C0 670 aa7.42□□□□□ -1.22
SLIRP-208ENST00000556956 PSEN2P49810 448 aa7.4□□□□□ -1.22
SLIRP-208ENST00000556956 EFCAB3Q8N7B9 438 aa7.4□□□□□ -1.22
SLIRP-208ENST00000556956 GSE1Q14687 1217 aa7.39□□□□□ -1.23
SLIRP-208ENST00000556956 ZNF775Q96BV0 537 aaPredicted RBP7.37□□□□□ -1.23
SLIRP-208ENST00000556956 MS4A4AQ96JQ5 239 aa7.34□□□□□ -1.23
SLIRP-208ENST00000556956 LOC100996750A0A140TA64 210 aa7.33□□□□□ -1.24
SLIRP-208ENST00000556956 STAC3Q96MF2 364 aa7.33□□□□□ -1.24
SLIRP-208ENST00000556956 KRTAP4-6Q9BYQ5 205 aa7.33□□□□□ -1.24
SLIRP-208ENST00000556956 PCDHGA4Q9Y5G9 962 aa7.33□□□□□ -1.24
SLIRP-208ENST00000556956 THSD4Q6ZMP0 1018 aa7.31□□□□□ -1.24
SLIRP-208ENST00000556956 LAPTM4AQ15012 233 aa7.3□□□□□ -1.24
SLIRP-208ENST00000556956 ZNF787Q6DD87 383 aa7.3□□□□□ -1.24
SLIRP-208ENST00000556956 GFRA3O60609 400 aa7.29□□□□□ -1.24
SLIRP-208ENST00000556956 KIF3CO14782 793 aa7.24□□□□□ -1.25
SLIRP-208ENST00000556956 VPS9D1Q9Y2B5 631 aa7.24□□□□□ -1.25
SLIRP-208ENST00000556956 PSDA5PKW4 1024 aaPredicted RBP7.23□□□□□ -1.25
SLIRP-208ENST00000556956 C2orf72A6NCS6 295 aa7.23□□□□□ -1.25
SLIRP-208ENST00000556956 SLC34A2O95436 690 aa7.23□□□□□ -1.25
SLIRP-208ENST00000556956 PHF8Q9UPP1 1060 aa7.22□□□□□ -1.25
SLIRP-208ENST00000556956 KDM4FA0A1W2PPD8 638 aa7.21□□□□□ -1.26
SLIRP-208ENST00000556956 ITGBL1O95965 494 aaPredicted RBP7.21□□□□□ -1.26
SLIRP-208ENST00000556956 KCNK17Q96T54 332 aa7.2□□□□□ -1.26
SLIRP-208ENST00000556956 KLHL34Q8N239 644 aa7.19□□□□□ -1.26
SLIRP-208ENST00000556956 WNT2BQ93097 391 aa7.19□□□□□ -1.26
SLIRP-208ENST00000556956 NRG2O14511 850 aaPredicted RBP7.17□□□□□ -1.26
SLIRP-208ENST00000556956 SOX12O15370 315 aa7.17□□□□□ -1.26
SLIRP-208ENST00000556956 BHMG1C9JSJ3 638 aaPredicted RBP7.16□□□□□ -1.26
SLIRP-208ENST00000556956 PPP4R3BQ5MIZ7 849 aa7.14□□□□□ -1.27
SLIRP-208ENST00000556956 GOLGA8CPA6NN73 597 aa7.13□□□□□ -1.27
SLIRP-208ENST00000556956 LCE2AQ5TA79 106 aaPredicted RBP7.09□□□□□ -1.27
SLIRP-208ENST00000556956 CIZ1Q9ULV3 898 aaPredicted RBP7.09□□□□□ -1.27
SLIRP-208ENST00000556956 MRPL50Q8N5N7 158 aaKnown RBP7.08□□□□□ -1.28
SLIRP-208ENST00000556956 SLC4A5Q9BY07 1137 aa7.08□□□□□ -1.28
SLIRP-208ENST00000556956 KCNH8Q96L42 1107 aa7.07□□□□□ -1.28
SLIRP-208ENST00000556956 KCNC4Q03721 635 aa7.06□□□□□ -1.28
SLIRP-208ENST00000556956 POTECB2RU33 542 aa7.05□□□□□ -1.28
SLIRP-208ENST00000556956 FBXO22Q8NEZ5 403 aa7.04□□□□□ -1.28
SLIRP-208ENST00000556956 PRKD2Q9BZL6 878 aa7.04□□□□□ -1.28
SLIRP-208ENST00000556956 TREML4Q6UXN2 200 aa7.03□□□□□ -1.28
SLIRP-208ENST00000556956 PTCD2Q8WV60 388 aaKnown RBP7.03□□□□□ -1.28
SLIRP-208ENST00000556956 ZBED2Q9BTP6 218 aa7.02□□□□□ -1.29
SLIRP-208ENST00000556956 BCAMP50895 628 aa7.01□□□□□ -1.29
SLIRP-208ENST00000556956 NLRP6P59044 892 aa7□□□□□ -1.29
SLIRP-208ENST00000556956 TMC2Q8TDI7 906 aa7□□□□□ -1.29
SLIRP-208ENST00000556956 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.99□□□□□ -1.29
SLIRP-208ENST00000556956 VASPP50552 380 aaPredicted RBP6.99□□□□□ -1.29
SLIRP-208ENST00000556956 ZFP91Q96JP5 570 aaPredicted RBP6.99□□□□□ -1.29
SLIRP-208ENST00000556956 BCL2L12Q9HB09 334 aa6.98□□□□□ -1.29
SLIRP-208ENST00000556956 PDZRN3Q9UPQ7 1066 aa6.98□□□□□ -1.29
SLIRP-208ENST00000556956 STK17AQ9UEE5 414 aa6.97□□□□□ -1.29
SLIRP-208ENST00000556956 ANKK1Q8NFD2 765 aa6.96□□□□□ -1.3
SLIRP-208ENST00000556956 NBPF3Q9H094 633 aa6.96□□□□□ -1.3
SLIRP-208ENST00000556956 WBP1LQ9NX94 342 aa6.96□□□□□ -1.3
SLIRP-208ENST00000556956 FBXO3Q9UK99 471 aa6.96□□□□□ -1.3
SLIRP-208ENST00000556956 ZNF454Q8N9F8 522 aa6.94□□□□□ -1.3
SLIRP-208ENST00000556956 FKBP8Q14318 412 aa6.93□□□□□ -1.3
SLIRP-208ENST00000556956 V9GY48 417 aaPredicted RBP6.93□□□□□ -1.3
SLIRP-208ENST00000556956 SOWAHBA6NEL2 793 aa6.92□□□□□ -1.3
SLIRP-208ENST00000556956 SPOCK2Q92563 424 aa6.92□□□□□ -1.3
SLIRP-208ENST00000556956 MFRPQ9BY79 579 aa6.92□□□□□ -1.3
SLIRP-208ENST00000556956 PTPREP23469 700 aa6.91□□□□□ -1.3
SLIRP-208ENST00000556956 NYAP1Q6ZVC0 841 aa6.91□□□□□ -1.3
SLIRP-208ENST00000556956 RNF25Q96BH1 459 aaPredicted RBP6.91□□□□□ -1.3
SLIRP-208ENST00000556956 SUZ12Q15022 739 aaKnown RBP6.9□□□□□ -1.3
SLIRP-208ENST00000556956 MYT1Q01538 1121 aa6.89□□□□□ -1.31
SLIRP-208ENST00000556956 RIOK3O14730 519 aaKnown RBP6.88□□□□□ -1.31
SLIRP-208ENST00000556956 PPP1R18Q6NYC8 613 aa6.86□□□□□ -1.31
SLIRP-208ENST00000556956 PLPP6Q8IY26 295 aa6.86□□□□□ -1.31
SLIRP-208ENST00000556956 VGFO15240 615 aaPredicted RBP6.85□□□□□ -1.31
SLIRP-208ENST00000556956 TBC1D12O60347 775 aa6.85□□□□□ -1.31
SLIRP-208ENST00000556956 FOSBP53539 338 aa6.85□□□□□ -1.31
SLIRP-208ENST00000556956 WFS1O76024 890 aa6.84□□□□□ -1.31
SLIRP-208ENST00000556956 PROX2Q3B8N5 592 aa6.84□□□□□ -1.31
SLIRP-208ENST00000556956 IFNLR1Q8IU57 520 aaPredicted RBP6.84□□□□□ -1.31
SLIRP-208ENST00000556956 FOXK1P85037 733 aa6.83□□□□□ -1.32
SLIRP-208ENST00000556956 TRIM67Q6ZTA4 783 aa6.83□□□□□ -1.32
SLIRP-208ENST00000556956 ZFRQ96KR1 1074 aaKnown RBP6.83□□□□□ -1.32
SLIRP-208ENST00000556956 ADAM33Q9BZ11 813 aa6.83□□□□□ -1.32
SLIRP-208ENST00000556956 RABGEF1Q9UJ41 708 aa6.83□□□□□ -1.32
SLIRP-208ENST00000556956 WIPF1O43516 503 aa6.82□□□□□ -1.32
SLIRP-208ENST00000556956 TRIM41Q8WV44 630 aa6.82□□□□□ -1.32
SLIRP-208ENST00000556956 INSM1Q01101 510 aaPredicted RBP6.8□□□□□ -1.32
SLIRP-208ENST00000556956 PKDCCQ504Y2 493 aa6.8□□□□□ -1.32
SLIRP-208ENST00000556956 TJAP1Q5JTD0 557 aa6.8□□□□□ -1.32
SLIRP-208ENST00000556956 BCL11BQ9C0K0 894 aaPredicted RBP6.8□□□□□ -1.32
SLIRP-208ENST00000556956 DSG2Q14126 1118 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms