RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-238ENST00000556288 SOX12O15370 315 aa9.08□□□□□ -0.96
ATXN3-238ENST00000556288 FAM205CA6NFA0 338 aa9.07□□□□□ -0.96
ATXN3-238ENST00000556288 PAXIP1Q6ZW49 1069 aaPredicted RBP9.07□□□□□ -0.96
ATXN3-238ENST00000556288 SPRYD3Q8NCJ5 442 aa9.07□□□□□ -0.96
ATXN3-238ENST00000556288 CFAP44Q96MT7 982 aa9.07□□□□□ -0.96
ATXN3-238ENST00000556288 UNC13AQ9UPW8 1703 aa9.07□□□□□ -0.96
ATXN3-238ENST00000556288 MFRPQ9BY79 579 aa9.05□□□□□ -0.96
ATXN3-238ENST00000556288 NLRP6P59044 892 aa9.04□□□□□ -0.96
ATXN3-238ENST00000556288 RYDENQ9NUL5 291 aaKnown RBP9.04□□□□□ -0.96
ATXN3-238ENST00000556288 PHF8Q9UPP1 1060 aa9.04□□□□□ -0.96
ATXN3-238ENST00000556288 ZCCHC6Q5VYS8 1495 aaKnown RBP9.03□□□□□ -0.96
ATXN3-238ENST00000556288 GTPBP6O43824 516 aaPredicted RBP9.03□□□□□ -0.96
ATXN3-238ENST00000556288 PLCB2Q00722 1185 aa9.03□□□□□ -0.96
ATXN3-238ENST00000556288 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.03□□□□□ -0.963e-6■■□□□ 13.5
ATXN3-238ENST00000556288 PDCD7Q8N8D1 485 aaKnown RBP9□□□□□ -0.97
ATXN3-238ENST00000556288 FBXO22Q8NEZ5 403 aa9□□□□□ -0.97
ATXN3-238ENST00000556288 C3orf67Q6ZVT6 689 aa8.98□□□□□ -0.97
ATXN3-238ENST00000556288 MS4A4AQ96JQ5 239 aa8.96□□□□□ -0.98
ATXN3-238ENST00000556288 ILDR1Q86SU0 546 aaPredicted RBP8.95□□□□□ -0.98
ATXN3-238ENST00000556288 MYO15BQ96JP2 1530 aa8.95□□□□□ -0.98
ATXN3-238ENST00000556288 SCRIBQ14160 1630 aa8.94□□□□□ -0.98
ATXN3-238ENST00000556288 DPY19L2Q6NUT2 758 aa8.94□□□□□ -0.98
ATXN3-238ENST00000556288 RNF166Q96A37 237 aaPredicted RBP8.94□□□□□ -0.98
ATXN3-238ENST00000556288 DCAF1Q9Y4B6 1507 aa8.94□□□□□ -0.98
ATXN3-238ENST00000556288 PPP1R37O75864 691 aa8.93□□□□□ -0.98
ATXN3-238ENST00000556288 HAP1P54257 671 aaPredicted RBP8.93□□□□□ -0.98
ATXN3-238ENST00000556288 L3MBTL3Q96JM7 780 aaPredicted RBP8.91□□□□□ -0.98
ATXN3-238ENST00000556288 G3V3G9 751 aa8.89□□□□□ -0.99
ATXN3-238ENST00000556288 TSHZ2Q9NRE2 1034 aa8.89□□□□□ -0.99
ATXN3-238ENST00000556288 HOXB3P14651 431 aaPredicted RBP8.88□□□□□ -0.99
ATXN3-238ENST00000556288 BOLA1Q9Y3E2 137 aa8.86□□□□□ -0.99
ATXN3-238ENST00000556288 SLC24A1O60721 1099 aa8.85□□□□□ -0.99
ATXN3-238ENST00000556288 BICRAQ9NZM4 1560 aa8.85□□□□□ -0.99
ATXN3-238ENST00000556288 HOXB1P14653 301 aaPredicted RBP8.84□□□□□ -0.99
ATXN3-238ENST00000556288 MYT1LQ9UL68 1186 aa8.84□□□□□ -0.99
ATXN3-238ENST00000556288 MICALL2Q8IY33 904 aa8.83□□□□□ -1
ATXN3-238ENST00000556288 ERBB3P21860 1342 aa8.81□□□□□ -1
ATXN3-238ENST00000556288 CADPS2Q86UW7 1296 aa8.8□□□□□ -1
ATXN3-238ENST00000556288 SHROOM4Q9ULL8 1493 aa8.8□□□□□ -1
ATXN3-238ENST00000556288 ZNF710Q8N1W2 664 aa8.77□□□□□ -1.01
ATXN3-238ENST00000556288 VARS2Q5ST30 1063 aaKnown RBP8.76□□□□□ -1.01
ATXN3-238ENST00000556288 VSIG10Q8N0Z9 540 aa8.76□□□□□ -1.01
ATXN3-238ENST00000556288 PDE4AP27815 886 aa8.75□□□□□ -1.01
ATXN3-238ENST00000556288 TMC2Q8TDI7 906 aa8.73□□□□□ -1.01
ATXN3-238ENST00000556288 KDM2AQ9Y2K7 1162 aa8.73□□□□□ -1.01
ATXN3-238ENST00000556288 NCKAP5LQ9HCH0 1330 aa8.73□□□□□ -1.01
ATXN3-238ENST00000556288 DOK7Q18PE1 504 aa8.72□□□□□ -1.01
ATXN3-238ENST00000556288 LARP6Q9BRS8 491 aaKnown RBP8.72□□□□□ -1.01
ATXN3-238ENST00000556288 WDR70Q9NW82 654 aa8.72□□□□□ -1.01
ATXN3-238ENST00000556288 ZNF687Q8N1G0 1237 aa8.71□□□□□ -1.02
ATXN3-238ENST00000556288 CRISPLD2Q9H0B8 497 aa8.71□□□□□ -1.02
ATXN3-238ENST00000556288 GPHNQ9NQX3 736 aaPredicted RBP8.71□□□□□ -1.02
ATXN3-238ENST00000556288 C2orf72A6NCS6 295 aa8.7□□□□□ -1.02
ATXN3-238ENST00000556288 TMEM92Q6UXU6 159 aa8.7□□□□□ -1.02
ATXN3-238ENST00000556288 PTGER2P43116 358 aa8.69□□□□□ -1.02
ATXN3-238ENST00000556288 DDX27Q96GQ7 796 aaKnown RBP8.67□□□□□ -1.02
ATXN3-238ENST00000556288 KIF3CO14782 793 aa8.66□□□□□ -1.02
ATXN3-238ENST00000556288 DSG2Q14126 1118 aa8.65□□□□□ -1.02
ATXN3-238ENST00000556288 MFSD10Q14728 455 aa8.65□□□□□ -1.02
ATXN3-238ENST00000556288 PPP1R15BQ5SWA1 713 aa8.65□□□□□ -1.02
ATXN3-238ENST00000556288 CC2D2AQ9P2K1 1620 aa8.65□□□□□ -1.03
ATXN3-238ENST00000556288 RIMBP2O15034 1052 aa8.64□□□□□ -1.03
ATXN3-238ENST00000556288 FOXK1P85037 733 aa8.64□□□□□ -1.03
ATXN3-238ENST00000556288 PLPP6Q8IY26 295 aa8.63□□□□□ -1.03
ATXN3-238ENST00000556288 EIF4G1Q04637 1599 aaKnown RBP8.63□□□□□ -1.03
ATXN3-238ENST00000556288 E2F4Q16254 413 aa8.61□□□□□ -1.03
ATXN3-238ENST00000556288 GPR153Q6NV75 609 aa8.6□□□□□ -1.03
ATXN3-238ENST00000556288 ANKRD13DQ6ZTN6 518 aa8.6□□□□□ -1.03
ATXN3-238ENST00000556288 ZSWIM6Q9HCJ5 1215 aa8.6□□□□□ -1.03
ATXN3-238ENST00000556288 PLA2G2EQ9NZK7 142 aa8.59□□□□□ -1.03
ATXN3-238ENST00000556288 CECR2Q9BXF3 1484 aa8.57□□□□□ -1.04
ATXN3-238ENST00000556288 CAMK2BQ13554 666 aa8.55□□□□□ -1.04
ATXN3-238ENST00000556288 P3H3Q8IVL6 736 aa8.55□□□□□ -1.04
ATXN3-238ENST00000556288 KCNV2Q8TDN2 545 aa8.54□□□□□ -1.04
ATXN3-238ENST00000556288 LSM11P83369 360 aaKnown RBP eCLIP8.53□□□□□ -1.04
ATXN3-238ENST00000556288 UPF1Q92900 1129 aaKnown RBP eCLIP8.53□□□□□ -1.04
ATXN3-238ENST00000556288 EMILIN3Q9NT22 766 aa8.52□□□□□ -1.05
ATXN3-238ENST00000556288 SLC34A2O95436 690 aa8.51□□□□□ -1.05
ATXN3-238ENST00000556288 MAP3K9P80192 1104 aa8.51□□□□□ -1.05
ATXN3-238ENST00000556288 ARHGEF1Q92888 912 aaKnown RBP8.51□□□□□ -1.05
ATXN3-238ENST00000556288 TBC1D12O60347 775 aa8.5□□□□□ -1.05
ATXN3-238ENST00000556288 OXER1Q8TDS5 423 aa8.5□□□□□ -1.05
ATXN3-238ENST00000556288 SMARCA4P51532 1647 aa8.5□□□□□ -1.05
ATXN3-238ENST00000556288 DPYSL4O14531 572 aa8.49□□□□□ -1.05
ATXN3-238ENST00000556288 ARSIQ5FYB1 569 aa8.49□□□□□ -1.05
ATXN3-238ENST00000556288 PTCD2Q8WV60 388 aaKnown RBP8.49□□□□□ -1.05
ATXN3-238ENST00000556288 ZNF316A6NFI3 1004 aaPredicted RBP8.48□□□□□ -1.05
ATXN3-238ENST00000556288 KHSRPQ92945 711 aaKnown RBP eCLIP8.47□□□□□ -1.05
ATXN3-238ENST00000556288 PCDHGA4Q9Y5G9 962 aa8.47□□□□□ -1.05
ATXN3-238ENST00000556288 HCSTQ9UBK5 93 aa8.46□□□□□ -1.06
ATXN3-238ENST00000556288 ARIH1Q9Y4X5 557 aaPredicted RBP8.46□□□□□ -1.06
ATXN3-238ENST00000556288 BAZ1AQ9NRL2 1556 aaPredicted RBP8.46□□□□□ -1.06
ATXN3-238ENST00000556288 NBR1Q14596 966 aa8.45□□□□□ -1.06
ATXN3-238ENST00000556288 POTEEQ6S8J3 1075 aa8.44□□□□□ -1.06
ATXN3-238ENST00000556288 MROH2BQ7Z745 1585 aa8.44□□□□□ -1.06
ATXN3-238ENST00000556288 SPDYE16A6NNV3 312 aaPredicted RBP8.43□□□□□ -1.06
ATXN3-238ENST00000556288 EVI5O60447 810 aa8.43□□□□□ -1.06
ATXN3-238ENST00000556288 WIZO95785 1651 aa8.43□□□□□ -1.06
ATXN3-238ENST00000556288 SMARCA2P51531 1590 aa8.42□□□□□ -1.06
ATXN3-238ENST00000556288 NUDT7P0C024 238 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 1027.6 ms