RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 KIF3CO14782 793 aa8.07□□□□□ -1.12
SCFD1-213ENST00000554776 C2orf72A6NCS6 295 aa8.05□□□□□ -1.12
SCFD1-213ENST00000554776 CADPS2Q86UW7 1296 aa8.05□□□□□ -1.12
SCFD1-213ENST00000554776 TMC2Q8TDI7 906 aa8.04□□□□□ -1.12
SCFD1-213ENST00000554776 CRISPLD2Q9H0B8 497 aa8.04□□□□□ -1.12
SCFD1-213ENST00000554776 NCKAP5LQ9HCH0 1330 aa8.03□□□□□ -1.12
SCFD1-213ENST00000554776 GPHNQ9NQX3 736 aaPredicted RBP8.03□□□□□ -1.12
SCFD1-213ENST00000554776 PDE4AP27815 886 aa8□□□□□ -1.13
SCFD1-213ENST00000554776 TSHZ2Q9NRE2 1034 aa8□□□□□ -1.13
SCFD1-213ENST00000554776 SNPHO15079 494 aa7.99□□□□□ -1.13
SCFD1-213ENST00000554776 FOXK1P85037 733 aa7.99□□□□□ -1.13
SCFD1-213ENST00000554776 HOXB3P14651 431 aaPredicted RBP7.98□□□□□ -1.13
SCFD1-213ENST00000554776 DSG2Q14126 1118 aa7.98□□□□□ -1.13
SCFD1-213ENST00000554776 MFSD10Q14728 455 aa7.98□□□□□ -1.13
SCFD1-213ENST00000554776 LARP6Q9BRS8 491 aaKnown RBP7.97□□□□□ -1.13
SCFD1-213ENST00000554776 PLPP6Q8IY26 295 aa7.96□□□□□ -1.14
SCFD1-213ENST00000554776 DDX27Q96GQ7 796 aaKnown RBP7.96□□□□□ -1.14
SCFD1-213ENST00000554776 DOK7Q18PE1 504 aa7.95□□□□□ -1.14
SCFD1-213ENST00000554776 PPP1R15BQ5SWA1 713 aa7.95□□□□□ -1.14
SCFD1-213ENST00000554776 SLC24A1O60721 1099 aa7.93□□□□□ -1.14
SCFD1-213ENST00000554776 SLC34A2O95436 690 aa7.93□□□□□ -1.14
SCFD1-213ENST00000554776 LCE2DQ5TA82 110 aaPredicted RBP7.93□□□□□ -1.14
SCFD1-213ENST00000554776 ST18O60284 1047 aa7.92□□□□□ -1.14
SCFD1-213ENST00000554776 HAP1P54257 671 aaPredicted RBP7.92□□□□□ -1.14
SCFD1-213ENST00000554776 FAM163AQ96GL9 167 aaPredicted RBP7.92□□□□□ -1.14
SCFD1-213ENST00000554776 RIMBP2O15034 1052 aa7.91□□□□□ -1.14
SCFD1-213ENST00000554776 ZSWIM6Q9HCJ5 1215 aa7.91□□□□□ -1.14
SCFD1-213ENST00000554776 ZNF710Q8N1W2 664 aa7.9□□□□□ -1.14
SCFD1-213ENST00000554776 PTCD2Q8WV60 388 aaKnown RBP7.89□□□□□ -1.15
SCFD1-213ENST00000554776 HOXB1P14653 301 aaPredicted RBP7.88□□□□□ -1.15
SCFD1-213ENST00000554776 CAMK2BQ13554 666 aa7.88□□□□□ -1.15
SCFD1-213ENST00000554776 GPR153Q6NV75 609 aa7.88□□□□□ -1.15
SCFD1-213ENST00000554776 OXER1Q8TDS5 423 aa7.87□□□□□ -1.15
SCFD1-213ENST00000554776 WDR70Q9NW82 654 aa7.87□□□□□ -1.15
SCFD1-213ENST00000554776 PCDHGA4Q9Y5G9 962 aa7.86□□□□□ -1.15
SCFD1-213ENST00000554776 ARSIQ5FYB1 569 aa7.85□□□□□ -1.15
SCFD1-213ENST00000554776 EMILIN3Q9NT22 766 aa7.85□□□□□ -1.15
SCFD1-213ENST00000554776 E2F4Q16254 413 aa7.84□□□□□ -1.15
SCFD1-213ENST00000554776 TBC1D12O60347 775 aa7.83□□□□□ -1.16
SCFD1-213ENST00000554776 VSIG10Q8N0Z9 540 aa7.83□□□□□ -1.16
SCFD1-213ENST00000554776 UPF1Q92900 1129 aaKnown RBP eCLIP7.83□□□□□ -1.16
SCFD1-213ENST00000554776 KHSRPQ92945 711 aaKnown RBP eCLIP7.83□□□□□ -1.163e-7■■■■□ 20.3
SCFD1-213ENST00000554776 PLSCR2Q9NRY7 297 aa7.83□□□□□ -1.16
SCFD1-213ENST00000554776 KDM2AQ9Y2K7 1162 aa7.83□□□□□ -1.16
SCFD1-213ENST00000554776 KDM4FA0A1W2PPD8 638 aa7.82□□□□□ -1.16
SCFD1-213ENST00000554776 MARVELD3Q96A59 401 aa7.82□□□□□ -1.16
SCFD1-213ENST00000554776 EMP3P54852 163 aa7.81□□□□□ -1.16
SCFD1-213ENST00000554776 NUDT7P0C024 238 aa7.8□□□□□ -1.16
SCFD1-213ENST00000554776 ARIH1Q9Y4X5 557 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-213ENST00000554776 POTEMA6NI47 508 aa7.79□□□□□ -1.16
SCFD1-213ENST00000554776 MAP3K9P80192 1104 aa7.79□□□□□ -1.16
SCFD1-213ENST00000554776 POTEGQ6S5H5 508 aa7.79□□□□□ -1.16
SCFD1-213ENST00000554776 DPYSL4O14531 572 aa7.78□□□□□ -1.16
SCFD1-213ENST00000554776 KCNV2Q8TDN2 545 aa7.77□□□□□ -1.17
SCFD1-213ENST00000554776 ZNF316A6NFI3 1004 aaPredicted RBP7.76□□□□□ -1.17
SCFD1-213ENST00000554776 EVI5O60447 810 aa7.76□□□□□ -1.17
SCFD1-213ENST00000554776 ANO8Q9HCE9 1232 aaPredicted RBP7.76□□□□□ -1.17
SCFD1-213ENST00000554776 ERBB3P21860 1342 aa7.76□□□□□ -1.17
SCFD1-213ENST00000554776 FAM205CA6NFA0 338 aa7.75□□□□□ -1.17
SCFD1-213ENST00000554776 P3H3Q8IVL6 736 aa7.75□□□□□ -1.17
SCFD1-213ENST00000554776 ARHGEF1Q92888 912 aaKnown RBP7.75□□□□□ -1.17
SCFD1-213ENST00000554776 HS3ST6Q96QI5 342 aa7.75□□□□□ -1.17
SCFD1-213ENST00000554776 LHX6Q9UPM6 363 aa7.75□□□□□ -1.17
SCFD1-213ENST00000554776 POTEB3A0JP26 581 aa7.74□□□□□ -1.17
SCFD1-213ENST00000554776 PDIA6Q15084 440 aa7.74□□□□□ -1.17
SCFD1-213ENST00000554776 POTEBQ6S5H4 581 aa7.74□□□□□ -1.17
SCFD1-213ENST00000554776 VARS2Q5ST30 1063 aaKnown RBP7.73□□□□□ -1.17
SCFD1-213ENST00000554776 PSDA5PKW4 1024 aaPredicted RBP7.72□□□□□ -1.17
SCFD1-213ENST00000554776 SPDYE16A6NNV3 312 aaPredicted RBP7.72□□□□□ -1.17
SCFD1-213ENST00000554776 PTGER2P43116 358 aa7.7□□□□□ -1.18
SCFD1-213ENST00000554776 JPH4Q96JJ6 628 aa7.69□□□□□ -1.18
SCFD1-213ENST00000554776 FOSBP53539 338 aa7.68□□□□□ -1.18
SCFD1-213ENST00000554776 ZNF687Q8N1G0 1237 aa7.68□□□□□ -1.18
SCFD1-213ENST00000554776 PPP4R3BQ5MIZ7 849 aa7.67□□□□□ -1.18
SCFD1-213ENST00000554776 CDAN1Q8IWY9 1227 aa7.67□□□□□ -1.18
SCFD1-213ENST00000554776 ZNF454Q8N9F8 522 aa7.67□□□□□ -1.18
SCFD1-213ENST00000554776 PHF14O94880 888 aa7.66□□□□□ -1.18
SCFD1-213ENST00000554776 PCDH10Q9P2E7 1040 aa7.66□□□□□ -1.18
SCFD1-213ENST00000554776 PCDHGA10Q9Y5H3 936 aa7.66□□□□□ -1.18
SCFD1-213ENST00000554776 DDX12PQ92771 950 aa7.64□□□□□ -1.19
SCFD1-213ENST00000554776 PBX2P40425 430 aa7.63□□□□□ -1.19
SCFD1-213ENST00000554776 TYW1BQ6NUM6 668 aa7.63□□□□□ -1.19
SCFD1-213ENST00000554776 POTEEQ6S8J3 1075 aa7.63□□□□□ -1.19
SCFD1-213ENST00000554776 ZDHHC16Q969W1 377 aa7.63□□□□□ -1.19
SCFD1-213ENST00000554776 EPAS1Q99814 870 aa7.63□□□□□ -1.19
SCFD1-213ENST00000554776 FBXW7Q969H0 707 aa7.62□□□□□ -1.19
SCFD1-213ENST00000554776 KRTAP3-3Q9BYR6 98 aa7.62□□□□□ -1.19
SCFD1-213ENST00000554776 KRTAP3-2Q9BYR7 98 aa7.62□□□□□ -1.19
SCFD1-213ENST00000554776 BCL2L12Q9HB09 334 aa7.62□□□□□ -1.19
SCFD1-213ENST00000554776 SEMA3EO15041 775 aa7.61□□□□□ -1.19
SCFD1-213ENST00000554776 ADAM33Q9BZ11 813 aa7.61□□□□□ -1.19
SCFD1-213ENST00000554776 GRXCR2A6NFK2 248 aa7.6□□□□□ -1.19
SCFD1-213ENST00000554776 MLLT3P42568 568 aaPredicted RBP7.6□□□□□ -1.19
SCFD1-213ENST00000554776 NBR1Q14596 966 aa7.6□□□□□ -1.19
SCFD1-213ENST00000554776 TESPA1A2RU30 521 aaPredicted RBP7.59□□□□□ -1.19
SCFD1-213ENST00000554776 ARHGAP33O14559 1287 aa7.59□□□□□ -1.19
SCFD1-213ENST00000554776 OSBPP22059 807 aa7.59□□□□□ -1.19
SCFD1-213ENST00000554776 EN1Q05925 392 aaPredicted RBP7.59□□□□□ -1.19
SCFD1-213ENST00000554776 AXIN2Q9Y2T1 843 aa7.59□□□□□ -1.19
SCFD1-213ENST00000554776 PTPREP23469 700 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms