RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 BOLA1Q9Y3E2 137 aa12.02□□□□□ -0.49
SCFD1-212ENST00000554486 TSHZ2Q9NRE2 1034 aa12□□□□□ -0.49
SCFD1-212ENST00000554486 SLAIN1Q8ND83 568 aa11.99□□□□□ -0.49
SCFD1-212ENST00000554486 MFRPQ9BY79 579 aa11.99□□□□□ -0.49
SCFD1-212ENST00000554486 FBXO22Q8NEZ5 403 aa11.97□□□□□ -0.49
SCFD1-212ENST00000554486 MS4A4AQ96JQ5 239 aa11.97□□□□□ -0.49
SCFD1-212ENST00000554486 RYDENQ9NUL5 291 aaKnown RBP11.94□□□□□ -0.5
SCFD1-212ENST00000554486 KDM2AQ9Y2K7 1162 aa11.94□□□□□ -0.5
SCFD1-212ENST00000554486 TMEM121BQ9BXQ6 578 aaPredicted RBP11.93□□□□□ -0.5
SCFD1-212ENST00000554486 MICALL2Q8IY33 904 aa11.9□□□□□ -0.5
SCFD1-212ENST00000554486 VSIG10Q8N0Z9 540 aa11.88□□□□□ -0.51
SCFD1-212ENST00000554486 SCRIBQ14160 1630 aa11.88□□□□□ -0.51
SCFD1-212ENST00000554486 UNC13AQ9UPW8 1703 aa11.87□□□□□ -0.51
SCFD1-212ENST00000554486 SNPHO15079 494 aa11.87□□□□□ -0.51
SCFD1-212ENST00000554486 PPP1R37O75864 691 aa11.87□□□□□ -0.51
SCFD1-212ENST00000554486 FAM163AQ96GL9 167 aaPredicted RBP11.82□□□□□ -0.52
SCFD1-212ENST00000554486 SHROOM4Q9ULL8 1493 aa11.81□□□□□ -0.52
SCFD1-212ENST00000554486 CADPS2Q86UW7 1296 aa11.8□□□□□ -0.52
SCFD1-212ENST00000554486 BICRAQ9NZM4 1560 aa11.75□□□□□ -0.53
SCFD1-212ENST00000554486 TMEM92Q6UXU6 159 aa11.72□□□□□ -0.53
SCFD1-212ENST00000554486 TMC2Q8TDI7 906 aa11.72□□□□□ -0.53
SCFD1-212ENST00000554486 DOK7Q18PE1 504 aa11.7□□□□□ -0.54
SCFD1-212ENST00000554486 ST18O60284 1047 aa11.69□□□□□ -0.54
SCFD1-212ENST00000554486 RIMBP2O15034 1052 aa11.68□□□□□ -0.54
SCFD1-212ENST00000554486 ZNF710Q8N1W2 664 aa11.67□□□□□ -0.54
SCFD1-212ENST00000554486 C2orf72A6NCS6 295 aa11.66□□□□□ -0.54
SCFD1-212ENST00000554486 KIF3CO14782 793 aa11.65□□□□□ -0.54
SCFD1-212ENST00000554486 POTEMA6NI47 508 aa11.64□□□□□ -0.55
SCFD1-212ENST00000554486 HOXB3P14651 431 aaPredicted RBP11.63□□□□□ -0.55
SCFD1-212ENST00000554486 LCE2DQ5TA82 110 aaPredicted RBP11.63□□□□□ -0.55
SCFD1-212ENST00000554486 POTEGQ6S5H5 508 aa11.63□□□□□ -0.55
SCFD1-212ENST00000554486 NCKAP5LQ9HCH0 1330 aa11.62□□□□□ -0.55
SCFD1-212ENST00000554486 ZSWIM6Q9HCJ5 1215 aa11.61□□□□□ -0.55
SCFD1-212ENST00000554486 GPHNQ9NQX3 736 aaPredicted RBP11.61□□□□□ -0.55
SCFD1-212ENST00000554486 PDE4AP27815 886 aa11.59□□□□□ -0.55
SCFD1-212ENST00000554486 CRISPLD2Q9H0B8 497 aa11.58□□□□□ -0.56
SCFD1-212ENST00000554486 FOXK1P85037 733 aa11.57□□□□□ -0.56
SCFD1-212ENST00000554486 HOXB1P14653 301 aaPredicted RBP11.55□□□□□ -0.56
SCFD1-212ENST00000554486 SLC34A2O95436 690 aa11.53□□□□□ -0.56
SCFD1-212ENST00000554486 EMP3P54852 163 aa11.53□□□□□ -0.56
SCFD1-212ENST00000554486 PLPP6Q8IY26 295 aa11.53□□□□□ -0.56
SCFD1-212ENST00000554486 MARVELD3Q96A59 401 aa11.53□□□□□ -0.56
SCFD1-212ENST00000554486 PCDH10Q9P2E7 1040 aa11.53□□□□□ -0.56
SCFD1-212ENST00000554486 MFSD10Q14728 455 aa11.52□□□□□ -0.57
SCFD1-212ENST00000554486 DSG2Q14126 1118 aa11.51□□□□□ -0.57
SCFD1-212ENST00000554486 GPR153Q6NV75 609 aa11.5□□□□□ -0.57
SCFD1-212ENST00000554486 LARP6Q9BRS8 491 aaKnown RBP11.5□□□□□ -0.57
SCFD1-212ENST00000554486 ARSIQ5FYB1 569 aa11.48□□□□□ -0.57
SCFD1-212ENST00000554486 KCNV2Q8TDN2 545 aa11.48□□□□□ -0.57
SCFD1-212ENST00000554486 CECR2Q9BXF3 1484 aa11.48□□□□□ -0.57
SCFD1-212ENST00000554486 TBC1D12O60347 775 aa11.47□□□□□ -0.57
SCFD1-212ENST00000554486 PPP1R15BQ5SWA1 713 aa11.47□□□□□ -0.57
SCFD1-212ENST00000554486 DDX27Q96GQ7 796 aaKnown RBP11.47□□□□□ -0.57
SCFD1-212ENST00000554486 WDR70Q9NW82 654 aa11.47□□□□□ -0.57
SCFD1-212ENST00000554486 ERBB3P21860 1342 aa11.46□□□□□ -0.57
SCFD1-212ENST00000554486 BCANQ96GW7 911 aa11.46□□□□□ -0.57
SCFD1-212ENST00000554486 FAM205CA6NFA0 338 aa11.45□□□□□ -0.58
SCFD1-212ENST00000554486 PCDHGA4Q9Y5G9 962 aa11.45□□□□□ -0.58
SCFD1-212ENST00000554486 PTCD2Q8WV60 388 aaKnown RBP11.44□□□□□ -0.58
SCFD1-212ENST00000554486 CDAN1Q8IWY9 1227 aa11.43□□□□□ -0.58
SCFD1-212ENST00000554486 CAMK2BQ13554 666 aa11.41□□□□□ -0.58
SCFD1-212ENST00000554486 E2F4Q16254 413 aa11.41□□□□□ -0.58
SCFD1-212ENST00000554486 HS3ST6Q96QI5 342 aa11.41□□□□□ -0.58
SCFD1-212ENST00000554486 EIF4G1Q04637 1599 aaKnown RBP11.4□□□□□ -0.58
SCFD1-212ENST00000554486 NUDT7P0C024 238 aa11.39□□□□□ -0.59
SCFD1-212ENST00000554486 KHSRPQ92945 711 aaKnown RBP eCLIP11.39□□□□□ -0.592e-9■■■■■ 33.1
SCFD1-212ENST00000554486 BAZ1AQ9NRL2 1556 aaPredicted RBP11.39□□□□□ -0.59
SCFD1-212ENST00000554486 SMARCA4P51532 1647 aa11.38□□□□□ -0.59
SCFD1-212ENST00000554486 MROH2BQ7Z745 1585 aa11.38□□□□□ -0.59
SCFD1-212ENST00000554486 P3H3Q8IVL6 736 aa11.38□□□□□ -0.59
SCFD1-212ENST00000554486 ZNF316A6NFI3 1004 aaPredicted RBP11.36□□□□□ -0.59
SCFD1-212ENST00000554486 VARS2Q5ST30 1063 aaKnown RBP11.36□□□□□ -0.59
SCFD1-212ENST00000554486 OXER1Q8TDS5 423 aa11.36□□□□□ -0.59
SCFD1-212ENST00000554486 UPF1Q92900 1129 aaKnown RBP eCLIP11.35□□□□□ -0.59
SCFD1-212ENST00000554486 ARHGEF1Q92888 912 aaKnown RBP11.34□□□□□ -0.59
SCFD1-212ENST00000554486 EMILIN3Q9NT22 766 aa11.34□□□□□ -0.59
SCFD1-212ENST00000554486 RSF1Q96T23 1441 aaPredicted RBP11.34□□□□□ -0.59
SCFD1-212ENST00000554486 PSDA5PKW4 1024 aaPredicted RBP11.33□□□□□ -0.6
SCFD1-212ENST00000554486 ARIH1Q9Y4X5 557 aaPredicted RBP11.33□□□□□ -0.6
SCFD1-212ENST00000554486 POTEB3A0JP26 581 aa11.32□□□□□ -0.6
SCFD1-212ENST00000554486 MAP3K9P80192 1104 aa11.32□□□□□ -0.6
SCFD1-212ENST00000554486 POTEBQ6S5H4 581 aa11.32□□□□□ -0.6
SCFD1-212ENST00000554486 NBR1Q14596 966 aa11.31□□□□□ -0.6
SCFD1-212ENST00000554486 ZNF687Q8N1G0 1237 aa11.31□□□□□ -0.6
SCFD1-212ENST00000554486 LHX6Q9UPM6 363 aa11.31□□□□□ -0.6
SCFD1-212ENST00000554486 CC2D2AQ9P2K1 1620 aa11.29□□□□□ -0.6
SCFD1-212ENST00000554486 KDM4FA0A1W2PPD8 638 aa11.28□□□□□ -0.6
SCFD1-212ENST00000554486 WIZO95785 1651 aa11.27□□□□□ -0.6
SCFD1-212ENST00000554486 PEG3Q9GZU2 1588 aa11.26□□□□□ -0.61
SCFD1-212ENST00000554486 ATAD2BQ9ULI0 1458 aa11.25□□□□□ -0.61
SCFD1-212ENST00000554486 EVI5O60447 810 aa11.25□□□□□ -0.61
SCFD1-212ENST00000554486 SEMA3EO15041 775 aa11.24□□□□□ -0.61
SCFD1-212ENST00000554486 PLSCR2Q9NRY7 297 aa11.24□□□□□ -0.61
SCFD1-212ENST00000554486 SMARCA2P51531 1590 aa11.24□□□□□ -0.61
SCFD1-212ENST00000554486 PPP4R3BQ5MIZ7 849 aa11.23□□□□□ -0.61
SCFD1-212ENST00000554486 ANO8Q9HCE9 1232 aaPredicted RBP11.23□□□□□ -0.61
SCFD1-212ENST00000554486 SUPT5HO00267 1087 aaKnown RBP11.22□□□□□ -0.61
SCFD1-212ENST00000554486 DPYSL4O14531 572 aa11.22□□□□□ -0.61
SCFD1-212ENST00000554486 NCAPD3P42695 1498 aa11.2□□□□□ -0.62
SCFD1-212ENST00000554486 TESPA1A2RU30 521 aaPredicted RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms