RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 SPRYD3Q8NCJ5 442 aa4.28□□□□□ -1.72
PRPF39-207ENST00000554439 HRCP23327 699 aa4.28□□□□□ -1.72
PRPF39-207ENST00000554439 PDCD7Q8N8D1 485 aaKnown RBP4.28□□□□□ -1.72
PRPF39-207ENST00000554439 RASEFQ8IZ41 740 aa4.27□□□□□ -1.73
PRPF39-207ENST00000554439 LSM11P83369 360 aaKnown RBP eCLIP4.26□□□□□ -1.736e-6■□□□□ 8.3
PRPF39-207ENST00000554439 ZBTB47Q9UFB7 747 aaPredicted RBP4.26□□□□□ -1.73
PRPF39-207ENST00000554439 MYO15BQ96JP2 1530 aa4.26□□□□□ -1.73
PRPF39-207ENST00000554439 G3V3G9 751 aa4.26□□□□□ -1.73
PRPF39-207ENST00000554439 DCAF8Q5TAQ9 597 aa4.26□□□□□ -1.73
PRPF39-207ENST00000554439 ANKRD13DQ6ZTN6 518 aa4.25□□□□□ -1.73
PRPF39-207ENST00000554439 PPARGC1BQ86YN6 1023 aaKnown RBP4.25□□□□□ -1.73
PRPF39-207ENST00000554439 MKRN3Q13064 507 aaKnown RBP4.24□□□□□ -1.73
PRPF39-207ENST00000554439 PCGF6Q9BYE7 350 aa4.24□□□□□ -1.73
PRPF39-207ENST00000554439 CHGAP10645 457 aaKnown RBP4.24□□□□□ -1.73
PRPF39-207ENST00000554439 PLCD3Q8N3E9 789 aa4.24□□□□□ -1.73
PRPF39-207ENST00000554439 A0A0G2JS52 829 aa4.22□□□□□ -1.73
PRPF39-207ENST00000554439 ILDR1Q86SU0 546 aaPredicted RBP4.22□□□□□ -1.73
PRPF39-207ENST00000554439 MIER1Q8N108 512 aa4.22□□□□□ -1.73
PRPF39-207ENST00000554439 RNF25Q96BH1 459 aaPredicted RBP4.22□□□□□ -1.73
PRPF39-207ENST00000554439 GOLGA2Q08379 1002 aa4.22□□□□□ -1.73
PRPF39-207ENST00000554439 HS6ST3Q8IZP7 471 aa4.21□□□□□ -1.74
PRPF39-207ENST00000554439 Q6ZNB5 142 aa4.2□□□□□ -1.74
PRPF39-207ENST00000554439 FAM212AQ96EL1 285 aa4.2□□□□□ -1.74
PRPF39-207ENST00000554439 NKX1-1Q15270 411 aaPredicted RBP4.2□□□□□ -1.74
PRPF39-207ENST00000554439 CIZ1Q9ULV3 898 aaPredicted RBP4.2□□□□□ -1.74
PRPF39-207ENST00000554439 TIMELESSQ9UNS1 1208 aa4.2□□□□□ -1.74
PRPF39-207ENST00000554439 LOC100996750A0A140TA64 210 aa4.19□□□□□ -1.74
PRPF39-207ENST00000554439 KRTAP4-6Q9BYQ5 205 aa4.19□□□□□ -1.74
PRPF39-207ENST00000554439 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.18□□□□□ -1.745e-7■■■■□ 22.8
PRPF39-207ENST00000554439 BOLA1Q9Y3E2 137 aa4.18□□□□□ -1.74
PRPF39-207ENST00000554439 ZNF316A6NFI3 1004 aaPredicted RBP4.17□□□□□ -1.74
PRPF39-207ENST00000554439 TK2O00142 265 aa4.17□□□□□ -1.74
PRPF39-207ENST00000554439 NBR1Q14596 966 aa4.17□□□□□ -1.74
PRPF39-207ENST00000554439 GPR153Q6NV75 609 aa4.17□□□□□ -1.74
PRPF39-207ENST00000554439 GTPBP6O43824 516 aaPredicted RBP4.16□□□□□ -1.74
PRPF39-207ENST00000554439 NUBP1P53384 320 aa4.16□□□□□ -1.74
PRPF39-207ENST00000554439 TRIM41Q8WV44 630 aa4.16□□□□□ -1.74
PRPF39-207ENST00000554439 LOC105371045A0A1W2PR82 267 aa4.15□□□□□ -1.74
PRPF39-207ENST00000554439 TULP1O00294 542 aaPredicted RBP4.15□□□□□ -1.74
PRPF39-207ENST00000554439 ZNF467Q7Z7K2 595 aaPredicted RBP4.14□□□□□ -1.75
PRPF39-207ENST00000554439 ZCCHC6Q5VYS8 1495 aaKnown RBP4.14□□□□□ -1.75
PRPF39-207ENST00000554439 GTF3C3Q9Y5Q9 886 aa4.14□□□□□ -1.75
PRPF39-207ENST00000554439 TRAF7Q6Q0C0 670 aa4.13□□□□□ -1.75
PRPF39-207ENST00000554439 RIOK3O14730 519 aaKnown RBP4.12□□□□□ -1.75
PRPF39-207ENST00000554439 GSE1Q14687 1217 aa4.11□□□□□ -1.75
PRPF39-207ENST00000554439 PSDA5PKW4 1024 aaPredicted RBP4.11□□□□□ -1.75
PRPF39-207ENST00000554439 ADGRD1Q6QNK2 874 aa4.1□□□□□ -1.75
PRPF39-207ENST00000554439 STAC3Q96MF2 364 aa4.09□□□□□ -1.75
PRPF39-207ENST00000554439 DCAF1Q9Y4B6 1507 aa4.09□□□□□ -1.75
PRPF39-207ENST00000554439 STK25O00506 426 aa4.08□□□□□ -1.76
PRPF39-207ENST00000554439 TMEM132AQ24JP5 1023 aa4.08□□□□□ -1.76
PRPF39-207ENST00000554439 ARHGAP33O14559 1287 aa4.07□□□□□ -1.76
PRPF39-207ENST00000554439 VGFO15240 615 aaPredicted RBP4.07□□□□□ -1.76
PRPF39-207ENST00000554439 HRO43593 1189 aa4.07□□□□□ -1.76
PRPF39-207ENST00000554439 CHRM1P11229 460 aaPredicted RBP4.07□□□□□ -1.76
PRPF39-207ENST00000554439 TRIM26Q12899 539 aaPredicted RBP4.07□□□□□ -1.76
PRPF39-207ENST00000554439 ZNF787Q6DD87 383 aa4.07□□□□□ -1.76
PRPF39-207ENST00000554439 STK17AQ9UEE5 414 aa4.07□□□□□ -1.76
PRPF39-207ENST00000554439 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.06□□□□□ -1.76
PRPF39-207ENST00000554439 ZFP91Q96JP5 570 aaPredicted RBP4.06□□□□□ -1.76
PRPF39-207ENST00000554439 ARXQ96QS3 562 aa4.05□□□□□ -1.76
PRPF39-207ENST00000554439 BCL11BQ9C0K0 894 aaPredicted RBP4.05□□□□□ -1.76
PRPF39-207ENST00000554439 NRG2O14511 850 aaPredicted RBP4.05□□□□□ -1.76
PRPF39-207ENST00000554439 CADPS2Q86UW7 1296 aa4.05□□□□□ -1.76
PRPF39-207ENST00000554439 CCDC180Q9P1Z9 1646 aa4.04□□□□□ -1.76
PRPF39-207ENST00000554439 KCNV2Q8TDN2 545 aa4.04□□□□□ -1.76
PRPF39-207ENST00000554439 STK24Q9Y6E0 443 aa4.04□□□□□ -1.76
PRPF39-207ENST00000554439 ARSIQ5FYB1 569 aa4.04□□□□□ -1.76
PRPF39-207ENST00000554439 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.04□□□□□ -1.76
PRPF39-207ENST00000554439 PCDHB8Q9UN66 801 aa4.04□□□□□ -1.76
PRPF39-207ENST00000554439 ZNF775Q96BV0 537 aaPredicted RBP4.03□□□□□ -1.76
PRPF39-207ENST00000554439 P3H3Q8IVL6 736 aa4.02□□□□□ -1.77
PRPF39-207ENST00000554439 KCTD12Q96CX2 325 aaKnown RBP4.02□□□□□ -1.77
PRPF39-207ENST00000554439 PSEN1P49768 467 aa4.02□□□□□ -1.77
PRPF39-207ENST00000554439 PYGBP11216 843 aa4.02□□□□□ -1.77
PRPF39-207ENST00000554439 LMOD2Q6P5Q4 547 aa4.02□□□□□ -1.77
PRPF39-207ENST00000554439 ERICH6Q7L0X2 663 aa4.02□□□□□ -1.77
PRPF39-207ENST00000554439 BRPF1P55201 1214 aaPredicted RBP4.01□□□□□ -1.77
PRPF39-207ENST00000554439 FAM9AQ8IZU1 332 aaPredicted RBP4.01□□□□□ -1.77
PRPF39-207ENST00000554439 RYDENQ9NUL5 291 aaKnown RBP4.01□□□□□ -1.77
PRPF39-207ENST00000554439 ITGBL1O95965 494 aaPredicted RBP4.01□□□□□ -1.77
PRPF39-207ENST00000554439 DPY19L2Q6NUT2 758 aa4□□□□□ -1.77
PRPF39-207ENST00000554439 GFRA3O60609 400 aa4□□□□□ -1.77
PRPF39-207ENST00000554439 DAXXQ9UER7 740 aaPredicted RBP4□□□□□ -1.77
PRPF39-207ENST00000554439 PDAP1Q13442 181 aaKnown RBP3.99□□□□□ -1.77
PRPF39-207ENST00000554439 ZEB1P37275 1124 aaPredicted RBP3.99□□□□□ -1.77
PRPF39-207ENST00000554439 LCE2BO14633 110 aa3.98□□□□□ -1.77
PRPF39-207ENST00000554439 POTEEQ6S8J3 1075 aa3.98□□□□□ -1.77
PRPF39-207ENST00000554439 C14orf37Q86TY3 774 aa3.98□□□□□ -1.77
PRPF39-207ENST00000554439 SLC4A5Q9BY07 1137 aa3.98□□□□□ -1.77
PRPF39-207ENST00000554439 ZC3H15Q8WU90 426 aaKnown RBP3.97□□□□□ -1.77
PRPF39-207ENST00000554439 SLC34A2O95436 690 aa3.97□□□□□ -1.77
PRPF39-207ENST00000554439 TREML4Q6UXN2 200 aa3.97□□□□□ -1.77
PRPF39-207ENST00000554439 MFRPQ9BY79 579 aa3.97□□□□□ -1.77
PRPF39-207ENST00000554439 NEUROD1Q13562 356 aa3.96□□□□□ -1.78
PRPF39-207ENST00000554439 NYAP1Q6ZVC0 841 aa3.96□□□□□ -1.78
PRPF39-207ENST00000554439 KCNH8Q96L42 1107 aa3.96□□□□□ -1.78
PRPF39-207ENST00000554439 WDR70Q9NW82 654 aa3.96□□□□□ -1.78
PRPF39-207ENST00000554439 INSM1Q01101 510 aaPredicted RBP3.95□□□□□ -1.78
PRPF39-207ENST00000554439 THSD4Q6ZMP0 1018 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms