RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 RICTORQ6R327 1708 aa22.77■■□□□ 1.23
CCDC88C-207ENST00000554051 EFCAB2Q5VUJ9 269 aa22.76■■□□□ 1.23
CCDC88C-207ENST00000554051 ITSN2Q9NZM3 1697 aa22.76■■□□□ 1.23
CCDC88C-207ENST00000554051 CDC42BPAQ5VT25 1732 aa22.76■■□□□ 1.23
CCDC88C-207ENST00000554051 SUPT6HQ7KZ85 1726 aaKnown RBP22.75■■□□□ 1.23
CCDC88C-207ENST00000554051 CDC42BPBQ9Y5S2 1711 aa22.75■■□□□ 1.23
CCDC88C-207ENST00000554051 ZMYM4Q5VZL5 1548 aa22.75■■□□□ 1.23
CCDC88C-207ENST00000554051 POGZQ7Z3K3 1410 aa22.73■■□□□ 1.23
CCDC88C-207ENST00000554051 ABCC1P33527 1531 aa22.71■■□□□ 1.23
CCDC88C-207ENST00000554051 ARHGEF40Q8TER5 1519 aa22.71■■□□□ 1.23
CCDC88C-207ENST00000554051 CCNB3Q8WWL7 1395 aa22.7■■□□□ 1.22
CCDC88C-207ENST00000554051 MAGI2Q86UL8 1455 aa22.7■■□□□ 1.22
CCDC88C-207ENST00000554051 ZNF518AQ6AHZ1 1483 aa22.69■■□□□ 1.22
CCDC88C-207ENST00000554051 GPATCH8Q9UKJ3 1502 aaKnown RBP22.68■■□□□ 1.22
CCDC88C-207ENST00000554051 LRRC9Q6ZRR7 1453 aa22.68■■□□□ 1.22
CCDC88C-207ENST00000554051 PLEKHH2Q8IVE3 1493 aa22.68■■□□□ 1.22
CCDC88C-207ENST00000554051 SCAPERQ9BY12 1400 aa22.68■■□□□ 1.22
CCDC88C-207ENST00000554051 KDM5CP41229 1560 aa22.65■■□□□ 1.22
CCDC88C-207ENST00000554051 APLP2Q06481 763 aa22.65■■□□□ 1.22
CCDC88C-207ENST00000554051 NCOA2Q15596 1464 aa22.65■■□□□ 1.22
CCDC88C-207ENST00000554051 ZFYVE16Q7Z3T8 1539 aa22.64■■□□□ 1.21
CCDC88C-207ENST00000554051 RAPGEF3O95398 923 aa22.63■■□□□ 1.21
CCDC88C-207ENST00000554051 SAMD9LQ8IVG5 1584 aa22.62■■□□□ 1.21
CCDC88C-207ENST00000554051 HECW2Q9P2P5 1572 aa22.6■■□□□ 1.21
CCDC88C-207ENST00000554051 KIAA1107Q9UPP5 1409 aa22.59■■□□□ 1.21
CCDC88C-207ENST00000554051 CFDP1Q9UEE9 299 aaPredicted RBP22.59■■□□□ 1.21
CCDC88C-207ENST00000554051 SYCP2Q9BX26 1530 aa22.57■■□□□ 1.2
CCDC88C-207ENST00000554051 MLH3Q9UHC1 1453 aa22.54■■□□□ 1.2
CCDC88C-207ENST00000554051 ARHGEF12Q9NZN5 1544 aa22.52■■□□□ 1.19
CCDC88C-207ENST00000554051 REREQ9P2R6 1566 aa22.51■■□□□ 1.19
CCDC88C-207ENST00000554051 C9orf84Q5VXU9 1444 aa22.5■■□□□ 1.19
CCDC88C-207ENST00000554051 ZNF777Q9ULD5 760 aaPredicted RBP22.5■■□□□ 1.19
CCDC88C-207ENST00000554051 MYOM3Q5VTT5 1437 aa22.49■■□□□ 1.19
CCDC88C-207ENST00000554051 MIA2Q96PC5 1412 aa22.49■■□□□ 1.19
CCDC88C-207ENST00000554051 TRAPPC8Q9Y2L5 1435 aa22.49■■□□□ 1.19
CCDC88C-207ENST00000554051 CAMSAP2Q08AD1 1489 aa22.49■■□□□ 1.19
CCDC88C-207ENST00000554051 YEATS2Q9ULM3 1422 aa22.48■■□□□ 1.19
CCDC88C-207ENST00000554051 ATP10AO60312 1499 aa22.47■■□□□ 1.19
CCDC88C-207ENST00000554051 DIP2CQ9Y2E4 1556 aa22.47■■□□□ 1.19
CCDC88C-207ENST00000554051 INO80Q9ULG1 1556 aaPredicted RBP22.46■■□□□ 1.19
CCDC88C-207ENST00000554051 KANK4Q5T7N3 995 aaPredicted RBP22.45■■□□□ 1.18
CCDC88C-207ENST00000554051 AEBP2Q6ZN18 517 aaPredicted RBP22.45■■□□□ 1.18
CCDC88C-207ENST00000554051 ARHGEF5Q12774 1597 aa22.45■■□□□ 1.18
CCDC88C-207ENST00000554051 ABCA6Q8N139 1617 aa22.45■■□□□ 1.18
CCDC88C-207ENST00000554051 BCORL1Q5H9F3 1711 aa22.45■■□□□ 1.18
CCDC88C-207ENST00000554051 ATP7AQ04656 1500 aa22.44■■□□□ 1.18
CCDC88C-207ENST00000554051 CCDC141Q6ZP82 1450 aa22.44■■□□□ 1.18
CCDC88C-207ENST00000554051 AFAP1Q8N556 730 aa22.44■■□□□ 1.18
CCDC88C-207ENST00000554051 KIDINS220Q9ULH0 1771 aa22.43■■□□□ 1.18
CCDC88C-207ENST00000554051 MBD5Q9P267 1494 aa22.42■■□□□ 1.18
CCDC88C-207ENST00000554051 RSPH4AQ5TD94 716 aa22.42■■□□□ 1.18
CCDC88C-207ENST00000554051 ADAMTSL3P82987 1691 aa22.41■■□□□ 1.18
CCDC88C-207ENST00000554051 SPAG9O60271 1321 aaKnown RBP22.4■■□□□ 1.18
CCDC88C-207ENST00000554051 KDM4FA0A1W2PPD8 638 aa22.4■■□□□ 1.18
CCDC88C-207ENST00000554051 MYT1LQ9UL68 1186 aa22.4■■□□□ 1.18
CCDC88C-207ENST00000554051 AGLP35573 1532 aa22.39■■□□□ 1.17
CCDC88C-207ENST00000554051 RTEL1-TNFRSF6BF6WH68 1400 aa22.39■■□□□ 1.17
CCDC88C-207ENST00000554051 ARID4BQ4LE39 1312 aaPredicted RBP22.38■■□□□ 1.17
CCDC88C-207ENST00000554051 ADGBQ8N7X0 1667 aa22.38■■□□□ 1.17
CCDC88C-207ENST00000554051 HNRNPMP52272 730 aaKnown RBP eCLIP22.37■■□□□ 1.17
CCDC88C-207ENST00000554051 PTPN23Q9H3S7 1636 aa22.35■■□□□ 1.17
CCDC88C-207ENST00000554051 SIGLEC1Q9BZZ2 1709 aa22.34■■□□□ 1.17
CCDC88C-207ENST00000554051 ZNF644Q9H582 1327 aaPredicted RBP22.34■■□□□ 1.17
CCDC88C-207ENST00000554051 FGD6Q6ZV73 1430 aa22.34■■□□□ 1.17
CCDC88C-207ENST00000554051 PLXNC1O60486 1568 aa22.33■■□□□ 1.17
CCDC88C-207ENST00000554051 MAST1Q9Y2H9 1570 aa22.33■■□□□ 1.17
CCDC88C-207ENST00000554051 MADDQ8WXG6 1647 aa22.33■■□□□ 1.17
CCDC88C-207ENST00000554051 TCOF1Q13428 1488 aaKnown RBP22.33■■□□□ 1.16
CCDC88C-207ENST00000554051 FER1L4A9Z1Z3 1794 aa22.3■■□□□ 1.16
CCDC88C-207ENST00000554051 SHANK2Q9UPX8 1470 aa22.3■■□□□ 1.16
CCDC88C-207ENST00000554051 CROCC2H7BZ55 1655 aa22.3■■□□□ 1.16
CCDC88C-207ENST00000554051 A2MP01023 1474 aa22.29■■□□□ 1.16
CCDC88C-207ENST00000554051 RIMS1Q86UR5 1692 aaKnown RBP22.27■■□□□ 1.16
CCDC88C-207ENST00000554051 DNMT1P26358 1616 aaKnown RBP22.27■■□□□ 1.16
CCDC88C-207ENST00000554051 TSPY4P0CV99 314 aa22.26■■□□□ 1.15
CCDC88C-207ENST00000554051 TSPY10P0CW01 314 aa22.26■■□□□ 1.15
CCDC88C-207ENST00000554051 PTPRMP28827 1452 aa22.26■■□□□ 1.15
CCDC88C-207ENST00000554051 FAM135AQ9P2D6 1515 aa22.22■■□□□ 1.15
CCDC88C-207ENST00000554051 CNTLNQ9NXG0 1405 aa22.22■■□□□ 1.15
CCDC88C-207ENST00000554051 DAPK1P53355 1430 aa22.2■■□□□ 1.14
CCDC88C-207ENST00000554051 EIF2AK4Q9P2K8 1649 aaKnown RBP22.19■■□□□ 1.14
CCDC88C-207ENST00000554051 DHX29Q7Z478 1369 aaKnown RBP22.18■■□□□ 1.14
CCDC88C-207ENST00000554051 ABCC5O15440 1437 aa22.17■■□□□ 1.14
CCDC88C-207ENST00000554051 MROH2AA6NES4 1674 aa22.17■■□□□ 1.14
CCDC88C-207ENST00000554051 DUOX2Q9NRD8 1548 aa22.16■■□□□ 1.14
CCDC88C-207ENST00000554051 MLECQ14165 292 aa22.15■■□□□ 1.14
CCDC88C-207ENST00000554051 ESF1Q9H501 851 aaKnown RBP22.14■■□□□ 1.13
CCDC88C-207ENST00000554051 PPP6R1Q9UPN7 881 aa22.13■■□□□ 1.13
CCDC88C-207ENST00000554051 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.12■■□□□ 1.13
CCDC88C-207ENST00000554051 RNF17Q9BXT8 1623 aaKnown RBP22.12■■□□□ 1.13
CCDC88C-207ENST00000554051 ERBINQ96RT1 1412 aa22.11■■□□□ 1.13
CCDC88C-207ENST00000554051 ADGRL2O95490 1459 aa22.1■■□□□ 1.13
CCDC88C-207ENST00000554051 ANKRD30AQ9BXX3 1397 aa22.1■■□□□ 1.13
CCDC88C-207ENST00000554051 KIF15Q9NS87 1388 aa22.09■■□□□ 1.13
CCDC88C-207ENST00000554051 ZC3H13Q5T200 1668 aaKnown RBP22.08■■□□□ 1.13
CCDC88C-207ENST00000554051 KDM5DQ9BY66 1539 aa22.08■■□□□ 1.13
CCDC88C-207ENST00000554051 FAM50AQ14320 339 aaKnown RBP22.07■■□□□ 1.12
CCDC88C-207ENST00000554051 C3P01024 1663 aa22.07■■□□□ 1.12
CCDC88C-207ENST00000554051 CLTCQ00610 1675 aaKnown RBP22.06■■□□□ 1.12
CCDC88C-207ENST00000554051 RRBP1Q9P2E9 1410 aaKnown RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms