RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 ZSWIM6Q9HCJ5 1215 aa12.18□□□□□ -0.46
SCFD1-210ENST00000553693 TMEM92Q6UXU6 159 aa12.17□□□□□ -0.46
SCFD1-210ENST00000553693 ANKRD13DQ6ZTN6 518 aa12.13□□□□□ -0.47
SCFD1-210ENST00000553693 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.11□□□□□ -0.47
SCFD1-210ENST00000553693 ZFP91Q96JP5 570 aaPredicted RBP12.11□□□□□ -0.47
SCFD1-210ENST00000553693 RGL2O15211 777 aa12.1□□□□□ -0.47
SCFD1-210ENST00000553693 PLA2G2EQ9NZK7 142 aa12.06□□□□□ -0.48
SCFD1-210ENST00000553693 LSM11P83369 360 aaKnown RBP eCLIP12.05□□□□□ -0.48
SCFD1-210ENST00000553693 MICALL2Q8IY33 904 aa12.05□□□□□ -0.48
SCFD1-210ENST00000553693 ARSIQ5FYB1 569 aa12.03□□□□□ -0.48
SCFD1-210ENST00000553693 BCL11BQ9C0K0 894 aaPredicted RBP12.03□□□□□ -0.48
SCFD1-210ENST00000553693 STK25O00506 426 aa12.02□□□□□ -0.49
SCFD1-210ENST00000553693 EFCAB3Q8N7B9 438 aa12.02□□□□□ -0.49
SCFD1-210ENST00000553693 ZNF316A6NFI3 1004 aaPredicted RBP12.01□□□□□ -0.49
SCFD1-210ENST00000553693 STK24Q9Y6E0 443 aa12.01□□□□□ -0.49
SCFD1-210ENST00000553693 KHSRPQ92945 711 aaKnown RBP eCLIP11.99□□□□□ -0.493e-7■■■■□ 20.3
SCFD1-210ENST00000553693 SOX12O15370 315 aa11.98□□□□□ -0.49
SCFD1-210ENST00000553693 POTEEQ6S8J3 1075 aa11.94□□□□□ -0.5
SCFD1-210ENST00000553693 HCSTQ9UBK5 93 aa11.92□□□□□ -0.5
SCFD1-210ENST00000553693 NLRP6P59044 892 aa11.9□□□□□ -0.5
SCFD1-210ENST00000553693 AMER1Q5JTC6 1135 aaPredicted RBP11.9□□□□□ -0.5
SCFD1-210ENST00000553693 HS6ST3Q8IZP7 471 aa11.9□□□□□ -0.5
SCFD1-210ENST00000553693 MS4A4AQ96JQ5 239 aa11.9□□□□□ -0.5
SCFD1-210ENST00000553693 PBX2P40425 430 aa11.88□□□□□ -0.51
SCFD1-210ENST00000553693 PHF8Q9UPP1 1060 aa11.88□□□□□ -0.51
SCFD1-210ENST00000553693 CHGAP10645 457 aaKnown RBP11.86□□□□□ -0.51
SCFD1-210ENST00000553693 AXIN2Q9Y2T1 843 aa11.86□□□□□ -0.51
SCFD1-210ENST00000553693 DCAF8L2P0C7V8 631 aa11.83□□□□□ -0.52
SCFD1-210ENST00000553693 MFRPQ9BY79 579 aa11.83□□□□□ -0.52
SCFD1-210ENST00000553693 FBXO22Q8NEZ5 403 aa11.82□□□□□ -0.52
SCFD1-210ENST00000553693 NUDT7P0C024 238 aa11.79□□□□□ -0.52
SCFD1-210ENST00000553693 ADGRD1Q6QNK2 874 aa11.77□□□□□ -0.53
SCFD1-210ENST00000553693 DNAJC5Q9H3Z4 198 aa11.77□□□□□ -0.53
SCFD1-210ENST00000553693 LHX6Q9UPM6 363 aa11.77□□□□□ -0.53
SCFD1-210ENST00000553693 RTN4Q9NQC3 1192 aaKnown RBP11.76□□□□□ -0.53
SCFD1-210ENST00000553693 RYDENQ9NUL5 291 aaKnown RBP11.73□□□□□ -0.53
SCFD1-210ENST00000553693 KIF3CO14782 793 aa11.71□□□□□ -0.53
SCFD1-210ENST00000553693 HRO43593 1189 aa11.7□□□□□ -0.54
SCFD1-210ENST00000553693 PCDHGA4Q9Y5G9 962 aa11.68□□□□□ -0.54
SCFD1-210ENST00000553693 ARHGAP33O14559 1287 aa11.67□□□□□ -0.54
SCFD1-210ENST00000553693 NKX1-1Q15270 411 aaPredicted RBP11.66□□□□□ -0.54
SCFD1-210ENST00000553693 C2orf72A6NCS6 295 aa11.65□□□□□ -0.54
SCFD1-210ENST00000553693 TK2O00142 265 aa11.64□□□□□ -0.55
SCFD1-210ENST00000553693 SLC34A2O95436 690 aa11.64□□□□□ -0.55
SCFD1-210ENST00000553693 RGS20O76081 388 aa11.63□□□□□ -0.55
SCFD1-210ENST00000553693 DMRTA1Q5VZB9 504 aa11.63□□□□□ -0.55
SCFD1-210ENST00000553693 IRX2Q9BZI1 471 aaPredicted RBP11.63□□□□□ -0.55
SCFD1-210ENST00000553693 KCTD12Q96CX2 325 aaKnown RBP11.62□□□□□ -0.55
SCFD1-210ENST00000553693 PPP1R37O75864 691 aa11.61□□□□□ -0.55
SCFD1-210ENST00000553693 PSEN2P49810 448 aa11.58□□□□□ -0.56
SCFD1-210ENST00000553693 KDM4FA0A1W2PPD8 638 aa11.57□□□□□ -0.56
SCFD1-210ENST00000553693 IFFO2Q5TF58 517 aa11.57□□□□□ -0.56
SCFD1-210ENST00000553693 TMC2Q8TDI7 906 aa11.55□□□□□ -0.56
SCFD1-210ENST00000553693 GTPBP6O43824 516 aaPredicted RBP11.54□□□□□ -0.56
SCFD1-210ENST00000553693 BBXQ8WY36 941 aaPredicted RBP11.54□□□□□ -0.56
SCFD1-210ENST00000553693 PSDA5PKW4 1024 aaPredicted RBP11.53□□□□□ -0.56
SCFD1-210ENST00000553693 A0A0G2JS52 829 aa11.5□□□□□ -0.57
SCFD1-210ENST00000553693 PTPN5P54829 565 aa11.48□□□□□ -0.57
SCFD1-210ENST00000553693 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.48□□□□□ -0.57
SCFD1-210ENST00000553693 STAC3Q96MF2 364 aa11.43□□□□□ -0.58
SCFD1-210ENST00000553693 GPHNQ9NQX3 736 aaPredicted RBP11.43□□□□□ -0.58
SCFD1-210ENST00000553693 PTCD2Q8WV60 388 aaKnown RBP11.41□□□□□ -0.58
SCFD1-210ENST00000553693 FOXK1P85037 733 aa11.4□□□□□ -0.58
SCFD1-210ENST00000553693 SPRYD3Q8NCJ5 442 aa11.4□□□□□ -0.58
SCFD1-210ENST00000553693 VPS9D1Q9Y2B5 631 aa11.4□□□□□ -0.58
SCFD1-210ENST00000553693 PPP4R3BQ5MIZ7 849 aa11.38□□□□□ -0.59
SCFD1-210ENST00000553693 CRISPLD2Q9H0B8 497 aa11.38□□□□□ -0.59
SCFD1-210ENST00000553693 THSD4Q6ZMP0 1018 aa11.37□□□□□ -0.59
SCFD1-210ENST00000553693 KCNK17Q96T54 332 aa11.37□□□□□ -0.59
SCFD1-210ENST00000553693 PDE4AP27815 886 aa11.36□□□□□ -0.59
SCFD1-210ENST00000553693 DSG2Q14126 1118 aa11.36□□□□□ -0.59
SCFD1-210ENST00000553693 PLPP6Q8IY26 295 aa11.36□□□□□ -0.59
SCFD1-210ENST00000553693 Q6ZNB5 142 aa11.34□□□□□ -0.59
SCFD1-210ENST00000553693 NCKAP5LQ9HCH0 1330 aa11.33□□□□□ -0.6
SCFD1-210ENST00000553693 PPP1R15BQ5SWA1 713 aa11.32□□□□□ -0.6
SCFD1-210ENST00000553693 PAXIP1Q6ZW49 1069 aaPredicted RBP11.32□□□□□ -0.6
SCFD1-210ENST00000553693 BHMG1C9JSJ3 638 aaPredicted RBP11.31□□□□□ -0.6
SCFD1-210ENST00000553693 CFAP44Q96MT7 982 aa11.31□□□□□ -0.6
SCFD1-210ENST00000553693 DDX27Q96GQ7 796 aaKnown RBP11.29□□□□□ -0.6
SCFD1-210ENST00000553693 LARP6Q9BRS8 491 aaKnown RBP11.29□□□□□ -0.6
SCFD1-210ENST00000553693 SLC4A5Q9BY07 1137 aa11.28□□□□□ -0.6
SCFD1-210ENST00000553693 LCE2BO14633 110 aa11.27□□□□□ -0.61
SCFD1-210ENST00000553693 MFSD10Q14728 455 aa11.27□□□□□ -0.61
SCFD1-210ENST00000553693 CADPS2Q86UW7 1296 aa11.27□□□□□ -0.61
SCFD1-210ENST00000553693 TBC1D12O60347 775 aa11.26□□□□□ -0.61
SCFD1-210ENST00000553693 KCNH8Q96L42 1107 aa11.26□□□□□ -0.61
SCFD1-210ENST00000553693 WNT2BQ93097 391 aa11.24□□□□□ -0.61
SCFD1-210ENST00000553693 OXER1Q8TDS5 423 aa11.21□□□□□ -0.61
SCFD1-210ENST00000553693 ITGBL1O95965 494 aaPredicted RBP11.2□□□□□ -0.62
SCFD1-210ENST00000553693 BCL2L12Q9HB09 334 aa11.2□□□□□ -0.62
SCFD1-210ENST00000553693 UPF1Q92900 1129 aaKnown RBP eCLIP11.19□□□□□ -0.62
SCFD1-210ENST00000553693 GOLGA8CPA6NN73 597 aa11.18□□□□□ -0.62
SCFD1-210ENST00000553693 ZBED2Q9BTP6 218 aa11.18□□□□□ -0.62
SCFD1-210ENST00000553693 MRPL50Q8N5N7 158 aaKnown RBP11.17□□□□□ -0.62
SCFD1-210ENST00000553693 ZNF454Q8N9F8 522 aa11.15□□□□□ -0.62
SCFD1-210ENST00000553693 MAP3K9P80192 1104 aa11.11□□□□□ -0.63
SCFD1-210ENST00000553693 CAMK2BQ13554 666 aa11.11□□□□□ -0.63
SCFD1-210ENST00000553693 TRAF7Q6Q0C0 670 aa11.11□□□□□ -0.63
SCFD1-210ENST00000553693 PTPREP23469 700 aa11.1□□□□□ -0.63
SCFD1-210ENST00000553693 WDR70Q9NW82 654 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms