RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 SNPHO15079 494 aa8.89□□□□□ -0.99
VRK1-202ENST00000553683 PDE4AP27815 886 aa8.89□□□□□ -0.99
VRK1-202ENST00000553683 TMC2Q8TDI7 906 aa8.89□□□□□ -0.99
VRK1-202ENST00000553683 CRISPLD2Q9H0B8 497 aa8.89□□□□□ -0.99
VRK1-202ENST00000553683 GPHNQ9NQX3 736 aaPredicted RBP8.89□□□□□ -0.99
VRK1-202ENST00000553683 TMEM92Q6UXU6 159 aa8.88□□□□□ -0.99
VRK1-202ENST00000553683 FOXK1P85037 733 aa8.86□□□□□ -0.99
VRK1-202ENST00000553683 C2orf72A6NCS6 295 aa8.85□□□□□ -0.99
VRK1-202ENST00000553683 MFSD10Q14728 455 aa8.84□□□□□ -0.99
VRK1-202ENST00000553683 NCKAP5LQ9HCH0 1330 aa8.83□□□□□ -1
VRK1-202ENST00000553683 SLC34A2O95436 690 aa8.81□□□□□ -1
VRK1-202ENST00000553683 DOK7Q18PE1 504 aa8.81□□□□□ -1
VRK1-202ENST00000553683 CADPS2Q86UW7 1296 aa8.81□□□□□ -1
VRK1-202ENST00000553683 DDX27Q96GQ7 796 aaKnown RBP8.8□□□□□ -1
VRK1-202ENST00000553683 ZSWIM6Q9HCJ5 1215 aa8.8□□□□□ -1
VRK1-202ENST00000553683 LARP6Q9BRS8 491 aaKnown RBP8.79□□□□□ -1
VRK1-202ENST00000553683 TSHZ2Q9NRE2 1034 aa8.79□□□□□ -1
VRK1-202ENST00000553683 RIMBP2O15034 1052 aa8.78□□□□□ -1
VRK1-202ENST00000553683 DSG2Q14126 1118 aa8.78□□□□□ -1
VRK1-202ENST00000553683 PPP1R15BQ5SWA1 713 aa8.78□□□□□ -1
VRK1-202ENST00000553683 HOXB3P14651 431 aaPredicted RBP8.77□□□□□ -1.01
VRK1-202ENST00000553683 PLPP6Q8IY26 295 aa8.77□□□□□ -1.01
VRK1-202ENST00000553683 WDR70Q9NW82 654 aa8.75□□□□□ -1.01
VRK1-202ENST00000553683 VSIG10Q8N0Z9 540 aa8.74□□□□□ -1.01
VRK1-202ENST00000553683 PTCD2Q8WV60 388 aaKnown RBP8.74□□□□□ -1.01
VRK1-202ENST00000553683 HAP1P54257 671 aaPredicted RBP8.73□□□□□ -1.01
VRK1-202ENST00000553683 CAMK2BQ13554 666 aa8.73□□□□□ -1.01
VRK1-202ENST00000553683 ZNF710Q8N1W2 664 aa8.72□□□□□ -1.01
VRK1-202ENST00000553683 TBC1D12O60347 775 aa8.71□□□□□ -1.02
VRK1-202ENST00000553683 HOXB1P14653 301 aaPredicted RBP8.7□□□□□ -1.02
VRK1-202ENST00000553683 ARIH1Q9Y4X5 557 aaPredicted RBP8.7□□□□□ -1.02
VRK1-202ENST00000553683 ST18O60284 1047 aa8.69□□□□□ -1.02
VRK1-202ENST00000553683 OXER1Q8TDS5 423 aa8.69□□□□□ -1.02
VRK1-202ENST00000553683 E2F4Q16254 413 aa8.68□□□□□ -1.02
VRK1-202ENST00000553683 GPR153Q6NV75 609 aa8.68□□□□□ -1.02
VRK1-202ENST00000553683 FAM163AQ96GL9 167 aaPredicted RBP8.68□□□□□ -1.02
VRK1-202ENST00000553683 PCDHGA4Q9Y5G9 962 aa8.67□□□□□ -1.02
VRK1-202ENST00000553683 LCE2DQ5TA82 110 aaPredicted RBP8.65□□□□□ -1.02
VRK1-202ENST00000553683 P3H3Q8IVL6 736 aa8.65□□□□□ -1.02
VRK1-202ENST00000553683 KDM4FA0A1W2PPD8 638 aa8.63□□□□□ -1.03
VRK1-202ENST00000553683 EMILIN3Q9NT22 766 aa8.63□□□□□ -1.03
VRK1-202ENST00000553683 ZNF316A6NFI3 1004 aaPredicted RBP8.62□□□□□ -1.03
VRK1-202ENST00000553683 ARHGEF1Q92888 912 aaKnown RBP8.62□□□□□ -1.03
VRK1-202ENST00000553683 MAP3K9P80192 1104 aa8.61□□□□□ -1.03
VRK1-202ENST00000553683 ARSIQ5FYB1 569 aa8.61□□□□□ -1.03
VRK1-202ENST00000553683 ANO8Q9HCE9 1232 aaPredicted RBP8.61□□□□□ -1.03
VRK1-202ENST00000553683 KDM2AQ9Y2K7 1162 aa8.61□□□□□ -1.03
VRK1-202ENST00000553683 PSDA5PKW4 1024 aaPredicted RBP8.6□□□□□ -1.03
VRK1-202ENST00000553683 SPDYE16A6NNV3 312 aaPredicted RBP8.6□□□□□ -1.03
VRK1-202ENST00000553683 UPF1Q92900 1129 aaKnown RBP eCLIP8.58□□□□□ -1.04
VRK1-202ENST00000553683 SLC24A1O60721 1099 aa8.57□□□□□ -1.04
VRK1-202ENST00000553683 EMP3P54852 163 aa8.57□□□□□ -1.04
VRK1-202ENST00000553683 PDIA6Q15084 440 aa8.57□□□□□ -1.04
VRK1-202ENST00000553683 EVI5O60447 810 aa8.56□□□□□ -1.04
VRK1-202ENST00000553683 NUDT7P0C024 238 aa8.56□□□□□ -1.04
VRK1-202ENST00000553683 PTGER2P43116 358 aa8.56□□□□□ -1.04
VRK1-202ENST00000553683 KCNV2Q8TDN2 545 aa8.55□□□□□ -1.04
VRK1-202ENST00000553683 DPYSL4O14531 572 aa8.54□□□□□ -1.04
VRK1-202ENST00000553683 PCDH10Q9P2E7 1040 aa8.54□□□□□ -1.04
VRK1-202ENST00000553683 ERBB3P21860 1342 aa8.54□□□□□ -1.04
VRK1-202ENST00000553683 POTEMA6NI47 508 aa8.53□□□□□ -1.04
VRK1-202ENST00000553683 POTEGQ6S5H5 508 aa8.53□□□□□ -1.04
VRK1-202ENST00000553683 KHSRPQ92945 711 aaKnown RBP eCLIP8.53□□□□□ -1.04
VRK1-202ENST00000553683 MARVELD3Q96A59 401 aa8.53□□□□□ -1.04
VRK1-202ENST00000553683 LHX6Q9UPM6 363 aa8.52□□□□□ -1.05
VRK1-202ENST00000553683 JPH4Q96JJ6 628 aa8.51□□□□□ -1.05
VRK1-202ENST00000553683 HS3ST6Q96QI5 342 aa8.5□□□□□ -1.05
VRK1-202ENST00000553683 FAM205CA6NFA0 338 aa8.49□□□□□ -1.05
VRK1-202ENST00000553683 PHF14O94880 888 aa8.49□□□□□ -1.05
VRK1-202ENST00000553683 FOSBP53539 338 aa8.49□□□□□ -1.05
VRK1-202ENST00000553683 ZNF687Q8N1G0 1237 aa8.49□□□□□ -1.05
VRK1-202ENST00000553683 EPAS1Q99814 870 aa8.49□□□□□ -1.05
VRK1-202ENST00000553683 PPP4R3BQ5MIZ7 849 aa8.48□□□□□ -1.05
VRK1-202ENST00000553683 VARS2Q5ST30 1063 aaKnown RBP8.48□□□□□ -1.05
VRK1-202ENST00000553683 FBXW7Q969H0 707 aa8.48□□□□□ -1.05
VRK1-202ENST00000553683 PBX2P40425 430 aa8.47□□□□□ -1.05
VRK1-202ENST00000553683 POTEB3A0JP26 581 aa8.44□□□□□ -1.06
VRK1-202ENST00000553683 TYW1BQ6NUM6 668 aa8.44□□□□□ -1.06
VRK1-202ENST00000553683 POTEBQ6S5H4 581 aa8.44□□□□□ -1.06
VRK1-202ENST00000553683 ZNF454Q8N9F8 522 aa8.44□□□□□ -1.06
VRK1-202ENST00000553683 ZDHHC16Q969W1 377 aa8.44□□□□□ -1.06
VRK1-202ENST00000553683 BCL2L12Q9HB09 334 aa8.44□□□□□ -1.06
VRK1-202ENST00000553683 PCDHGA10Q9Y5H3 936 aa8.44□□□□□ -1.06
VRK1-202ENST00000553683 SMYD5Q6GMV2 418 aa8.41□□□□□ -1.06
VRK1-202ENST00000553683 CDAN1Q8IWY9 1227 aa8.41□□□□□ -1.06
VRK1-202ENST00000553683 KCNH8Q96L42 1107 aa8.41□□□□□ -1.06
VRK1-202ENST00000553683 TESPA1A2RU30 521 aaPredicted RBP8.4□□□□□ -1.06
VRK1-202ENST00000553683 ARHGAP33O14559 1287 aa8.4□□□□□ -1.06
VRK1-202ENST00000553683 DDX12PQ92771 950 aa8.39□□□□□ -1.07
VRK1-202ENST00000553683 PTPREP23469 700 aa8.38□□□□□ -1.07
VRK1-202ENST00000553683 EN1Q05925 392 aaPredicted RBP8.38□□□□□ -1.07
VRK1-202ENST00000553683 SEMA3EO15041 775 aa8.37□□□□□ -1.07
VRK1-202ENST00000553683 OSBPP22059 807 aa8.37□□□□□ -1.07
VRK1-202ENST00000553683 NBR1Q14596 966 aa8.37□□□□□ -1.07
VRK1-202ENST00000553683 ADAM33Q9BZ11 813 aa8.37□□□□□ -1.07
VRK1-202ENST00000553683 GRXCR2A6NFK2 248 aa8.36□□□□□ -1.07
VRK1-202ENST00000553683 CERKQ8TCT0 537 aa8.36□□□□□ -1.07
VRK1-202ENST00000553683 SLC4A5Q9BY07 1137 aa8.36□□□□□ -1.07
VRK1-202ENST00000553683 TK2O00142 265 aa8.35□□□□□ -1.07
VRK1-202ENST00000553683 TULP1O00294 542 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms