RNA–Protein interactions for RNA: ENST00000553309.5

ATXN3-218, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,022 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-218ENST00000553309 FAM163AQ96GL9 167 aaPredicted RBP12.84□□□□□ -0.35
ATXN3-218ENST00000553309 C2orf72A6NCS6 295 aa12.83□□□□□ -0.36
ATXN3-218ENST00000553309 SNPHO15079 494 aa12.83□□□□□ -0.36
ATXN3-218ENST00000553309 KIF3CO14782 793 aa12.81□□□□□ -0.36
ATXN3-218ENST00000553309 GPHNQ9NQX3 736 aaPredicted RBP12.78□□□□□ -0.36
ATXN3-218ENST00000553309 PDE4AP27815 886 aa12.76□□□□□ -0.37
ATXN3-218ENST00000553309 CADPS2Q86UW7 1296 aa12.76□□□□□ -0.37
ATXN3-218ENST00000553309 CRISPLD2Q9H0B8 497 aa12.74□□□□□ -0.37
ATXN3-218ENST00000553309 NCKAP5LQ9HCH0 1330 aa12.73□□□□□ -0.37
ATXN3-218ENST00000553309 HOXB3P14651 431 aaPredicted RBP12.73□□□□□ -0.37
ATXN3-218ENST00000553309 DOK7Q18PE1 504 aa12.72□□□□□ -0.37
ATXN3-218ENST00000553309 LARP6Q9BRS8 491 aaKnown RBP12.72□□□□□ -0.37
ATXN3-218ENST00000553309 ST18O60284 1047 aa12.71□□□□□ -0.37
ATXN3-218ENST00000553309 FOXK1P85037 733 aa12.71□□□□□ -0.37
ATXN3-218ENST00000553309 PLCB2Q00722 1185 aa12.71□□□□□ -0.37
ATXN3-218ENST00000553309 DSG2Q14126 1118 aa12.7□□□□□ -0.38
ATXN3-218ENST00000553309 PLPP6Q8IY26 295 aa12.69□□□□□ -0.38
ATXN3-218ENST00000553309 ZNF710Q8N1W2 664 aa12.69□□□□□ -0.38
ATXN3-218ENST00000553309 TSHZ2Q9NRE2 1034 aa12.68□□□□□ -0.38
ATXN3-218ENST00000553309 LCE2DQ5TA82 110 aaPredicted RBP12.67□□□□□ -0.38
ATXN3-218ENST00000553309 RIMBP2O15034 1052 aa12.66□□□□□ -0.38
ATXN3-218ENST00000553309 PPP1R15BQ5SWA1 713 aa12.65□□□□□ -0.38
ATXN3-218ENST00000553309 DDX27Q96GQ7 796 aaKnown RBP12.64□□□□□ -0.39
ATXN3-218ENST00000553309 SLC34A2O95436 690 aa12.61□□□□□ -0.39
ATXN3-218ENST00000553309 MFSD10Q14728 455 aa12.61□□□□□ -0.39
ATXN3-218ENST00000553309 ZSWIM6Q9HCJ5 1215 aa12.6□□□□□ -0.39
ATXN3-218ENST00000553309 HOXB1P14653 301 aaPredicted RBP12.59□□□□□ -0.39
ATXN3-218ENST00000553309 ARSIQ5FYB1 569 aa12.59□□□□□ -0.39
ATXN3-218ENST00000553309 GPR153Q6NV75 609 aa12.58□□□□□ -0.4
ATXN3-218ENST00000553309 MARVELD3Q96A59 401 aa12.58□□□□□ -0.4
ATXN3-218ENST00000553309 POTEGQ6S5H5 508 aa12.56□□□□□ -0.4
ATXN3-218ENST00000553309 PCDHGA4Q9Y5G9 962 aa12.56□□□□□ -0.4
ATXN3-218ENST00000553309 POTEMA6NI47 508 aa12.55□□□□□ -0.4
ATXN3-218ENST00000553309 PTCD2Q8WV60 388 aaKnown RBP12.55□□□□□ -0.4
ATXN3-218ENST00000553309 WDR70Q9NW82 654 aa12.55□□□□□ -0.4
ATXN3-218ENST00000553309 HAP1P54257 671 aaPredicted RBP12.54□□□□□ -0.4
ATXN3-218ENST00000553309 KHSRPQ92945 711 aaKnown RBP eCLIP12.54□□□□□ -0.4
ATXN3-218ENST00000553309 TBC1D12O60347 775 aa12.52□□□□□ -0.41
ATXN3-218ENST00000553309 EMP3P54852 163 aa12.52□□□□□ -0.41
ATXN3-218ENST00000553309 UPF1Q92900 1129 aaKnown RBP eCLIP12.52□□□□□ -0.41
ATXN3-218ENST00000553309 OXER1Q8TDS5 423 aa12.5□□□□□ -0.41
ATXN3-218ENST00000553309 NUDT7P0C024 238 aa12.48□□□□□ -0.41
ATXN3-218ENST00000553309 FAM205CA6NFA0 338 aa12.47□□□□□ -0.41
ATXN3-218ENST00000553309 EMILIN3Q9NT22 766 aa12.47□□□□□ -0.41
ATXN3-218ENST00000553309 ERBB3P21860 1342 aa12.46□□□□□ -0.41
ATXN3-218ENST00000553309 CAMK2BQ13554 666 aa12.46□□□□□ -0.41
ATXN3-218ENST00000553309 MAP3K9P80192 1104 aa12.45□□□□□ -0.42
ATXN3-218ENST00000553309 E2F4Q16254 413 aa12.44□□□□□ -0.42
ATXN3-218ENST00000553309 KDM4FA0A1W2PPD8 638 aa12.41□□□□□ -0.42
ATXN3-218ENST00000553309 POTEB3A0JP26 581 aa12.41□□□□□ -0.42
ATXN3-218ENST00000553309 ZNF316A6NFI3 1004 aaPredicted RBP12.41□□□□□ -0.42
ATXN3-218ENST00000553309 POTEBQ6S5H4 581 aa12.41□□□□□ -0.42
ATXN3-218ENST00000553309 HS3ST6Q96QI5 342 aa12.41□□□□□ -0.42
ATXN3-218ENST00000553309 LHX6Q9UPM6 363 aa12.41□□□□□ -0.42
ATXN3-218ENST00000553309 VARS2Q5ST30 1063 aaKnown RBP12.39□□□□□ -0.43
ATXN3-218ENST00000553309 DPYSL4O14531 572 aa12.38□□□□□ -0.43
ATXN3-218ENST00000553309 EVI5O60447 810 aa12.37□□□□□ -0.43
ATXN3-218ENST00000553309 CDAN1Q8IWY9 1227 aa12.36□□□□□ -0.43
ATXN3-218ENST00000553309 ANO8Q9HCE9 1232 aaPredicted RBP12.35□□□□□ -0.43
ATXN3-218ENST00000553309 KDM2AQ9Y2K7 1162 aa12.35□□□□□ -0.43
ATXN3-218ENST00000553309 VSIG10Q8N0Z9 540 aa12.33□□□□□ -0.44
ATXN3-218ENST00000553309 PCDH10Q9P2E7 1040 aa12.33□□□□□ -0.44
ATXN3-218ENST00000553309 PSDA5PKW4 1024 aaPredicted RBP12.3□□□□□ -0.44
ATXN3-218ENST00000553309 ZNF687Q8N1G0 1237 aa12.3□□□□□ -0.44
ATXN3-218ENST00000553309 ARIH1Q9Y4X5 557 aaPredicted RBP12.3□□□□□ -0.44
ATXN3-218ENST00000553309 KCNV2Q8TDN2 545 aa12.27□□□□□ -0.45
ATXN3-218ENST00000553309 SPDYE16A6NNV3 312 aaPredicted RBP12.26□□□□□ -0.45
ATXN3-218ENST00000553309 ZNF454Q8N9F8 522 aa12.26□□□□□ -0.45
ATXN3-218ENST00000553309 PPP4R3BQ5MIZ7 849 aa12.25□□□□□ -0.45
ATXN3-218ENST00000553309 ARHGEF1Q92888 912 aaKnown RBP12.25□□□□□ -0.45
ATXN3-218ENST00000553309 PDIA6Q15084 440 aa12.24□□□□□ -0.45
ATXN3-218ENST00000553309 FOSBP53539 338 aa12.23□□□□□ -0.45
ATXN3-218ENST00000553309 P3H3Q8IVL6 736 aa12.23□□□□□ -0.45
ATXN3-218ENST00000553309 JPH4Q96JJ6 628 aa12.21□□□□□ -0.45
ATXN3-218ENST00000553309 PTGER2P43116 358 aa12.2□□□□□ -0.46
ATXN3-218ENST00000553309 DDX12PQ92771 950 aa12.2□□□□□ -0.46
ATXN3-218ENST00000553309 KRTAP3-3Q9BYR6 98 aa12.19□□□□□ -0.46
ATXN3-218ENST00000553309 KRTAP3-2Q9BYR7 98 aa12.19□□□□□ -0.46
ATXN3-218ENST00000553309 PCDHGA10Q9Y5H3 936 aa12.19□□□□□ -0.46
ATXN3-218ENST00000553309 PHF14O94880 888 aa12.18□□□□□ -0.46
ATXN3-218ENST00000553309 ZDHHC16Q969W1 377 aa12.18□□□□□ -0.46
ATXN3-218ENST00000553309 AXIN2Q9Y2T1 843 aa12.18□□□□□ -0.46
ATXN3-218ENST00000553309 POTEEQ6S8J3 1075 aa12.17□□□□□ -0.46
ATXN3-218ENST00000553309 ARHGAP33O14559 1287 aa12.16□□□□□ -0.46
ATXN3-218ENST00000553309 PBX2P40425 430 aa12.16□□□□□ -0.46
ATXN3-218ENST00000553309 TYW1BQ6NUM6 668 aa12.15□□□□□ -0.46
ATXN3-218ENST00000553309 EPAS1Q99814 870 aa12.15□□□□□ -0.46
ATXN3-218ENST00000553309 GRXCR2A6NFK2 248 aa12.14□□□□□ -0.47
ATXN3-218ENST00000553309 ADAM33Q9BZ11 813 aa12.14□□□□□ -0.47
ATXN3-218ENST00000553309 BCL2L12Q9HB09 334 aa12.13□□□□□ -0.47
ATXN3-218ENST00000553309 PSEN2P49810 448 aa12.12□□□□□ -0.47
ATXN3-218ENST00000553309 ANKRD13DQ6ZTN6 518 aa12.12□□□□□ -0.47
ATXN3-218ENST00000553309 FBXW7Q969H0 707 aa12.12□□□□□ -0.47
ATXN3-218ENST00000553309 KCNK17Q96T54 332 aa12.11□□□□□ -0.47
ATXN3-218ENST00000553309 PTPREP23469 700 aa12.1□□□□□ -0.47
ATXN3-218ENST00000553309 LSM11P83369 360 aaKnown RBP eCLIP12.1□□□□□ -0.47
ATXN3-218ENST00000553309 NBR1Q14596 966 aa12.1□□□□□ -0.47
ATXN3-218ENST00000553309 RBM33Q96EV2 1170 aaKnown RBP12.1□□□□□ -0.47
ATXN3-218ENST00000553309 KCNH8Q96L42 1107 aa12.1□□□□□ -0.47
ATXN3-218ENST00000553309 SEMA3EO15041 775 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms