RNA–Protein interactions for RNA: ENST00000550102.5

CHMP1A-208, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 5 BASIC

Gene CHMP1A, Length 803 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-208ENST00000550102 ARHGEF40Q8TER5 1519 aa27.58■■■□□ 2.01
CHMP1A-208ENST00000550102 RAPGEF3O95398 923 aa27.57■■■□□ 2
CHMP1A-208ENST00000550102 EHBP1L1Q8N3D4 1523 aa27.56■■■□□ 2
CHMP1A-208ENST00000550102 VPS8Q8N3P4 1428 aa27.54■■■□□ 2
CHMP1A-208ENST00000550102 POGZQ7Z3K3 1410 aa27.53■■■□□ 2
CHMP1A-208ENST00000550102 EFCAB2Q5VUJ9 269 aa27.52■■■□□ 2
CHMP1A-208ENST00000550102 MTUS2Q5JR59 1369 aa27.51■■□□□ 1.99
CHMP1A-208ENST00000550102 SCAPERQ9BY12 1400 aa27.5■■□□□ 1.99
CHMP1A-208ENST00000550102 KDM4FA0A1W2PPD8 638 aa27.49■■□□□ 1.99
CHMP1A-208ENST00000550102 TIAM1Q13009 1591 aa27.48■■□□□ 1.99
CHMP1A-208ENST00000550102 ITSN2Q9NZM3 1697 aa27.48■■□□□ 1.99
CHMP1A-208ENST00000550102 ABCC1P33527 1531 aa27.47■■□□□ 1.99
CHMP1A-208ENST00000550102 ZFYVE16Q7Z3T8 1539 aa27.47■■□□□ 1.99
CHMP1A-208ENST00000550102 ZNF518AQ6AHZ1 1483 aa27.44■■□□□ 1.98
CHMP1A-208ENST00000550102 MAGI2Q86UL8 1455 aa27.44■■□□□ 1.98
CHMP1A-208ENST00000550102 KDM5CP41229 1560 aa27.43■■□□□ 1.98
CHMP1A-208ENST00000550102 SUPT6HQ7KZ85 1726 aaKnown RBP27.43■■□□□ 1.98
CHMP1A-208ENST00000550102 GPATCH8Q9UKJ3 1502 aaKnown RBP27.41■■□□□ 1.98
CHMP1A-208ENST00000550102 SAMD9LQ8IVG5 1584 aa27.4■■□□□ 1.98
CHMP1A-208ENST00000550102 HECW2Q9P2P5 1572 aa27.4■■□□□ 1.98
CHMP1A-208ENST00000550102 CCNB3Q8WWL7 1395 aa27.38■■□□□ 1.97
CHMP1A-208ENST00000550102 BCORL1Q5H9F3 1711 aa27.37■■□□□ 1.97
CHMP1A-208ENST00000550102 YEATS2Q9ULM3 1422 aa27.36■■□□□ 1.97
CHMP1A-208ENST00000550102 MAP3K1Q13233 1512 aa27.36■■□□□ 1.97
CHMP1A-208ENST00000550102 ADAMTSL3P82987 1691 aa27.34■■□□□ 1.97
CHMP1A-208ENST00000550102 SYCP2Q9BX26 1530 aa27.34■■□□□ 1.97
CHMP1A-208ENST00000550102 SIGLEC1Q9BZZ2 1709 aa27.33■■□□□ 1.97
CHMP1A-208ENST00000550102 ARHGEF12Q9NZN5 1544 aa27.33■■□□□ 1.97
CHMP1A-208ENST00000550102 NCOA2Q15596 1464 aa27.31■■□□□ 1.96
CHMP1A-208ENST00000550102 LRRC9Q6ZRR7 1453 aa27.31■■□□□ 1.96
CHMP1A-208ENST00000550102 PLEKHH2Q8IVE3 1493 aa27.31■■□□□ 1.96
CHMP1A-208ENST00000550102 TRAPPC8Q9Y2L5 1435 aa27.29■■□□□ 1.96
CHMP1A-208ENST00000550102 ABCA6Q8N139 1617 aa27.29■■□□□ 1.96
CHMP1A-208ENST00000550102 DIP2CQ9Y2E4 1556 aa27.28■■□□□ 1.96
CHMP1A-208ENST00000550102 MADDQ8WXG6 1647 aa27.27■■□□□ 1.96
CHMP1A-208ENST00000550102 MLH3Q9UHC1 1453 aa27.26■■□□□ 1.95
CHMP1A-208ENST00000550102 C9orf84Q5VXU9 1444 aa27.26■■□□□ 1.95
CHMP1A-208ENST00000550102 CFDP1Q9UEE9 299 aaPredicted RBP27.26■■□□□ 1.95
CHMP1A-208ENST00000550102 ATP10AO60312 1499 aa27.25■■□□□ 1.95
CHMP1A-208ENST00000550102 KIDINS220Q9ULH0 1771 aa27.25■■□□□ 1.95
CHMP1A-208ENST00000550102 ARID4BQ4LE39 1312 aaPredicted RBP27.25■■□□□ 1.95
CHMP1A-208ENST00000550102 AFAP1Q8N556 730 aa27.25■■□□□ 1.95
CHMP1A-208ENST00000550102 ZNF777Q9ULD5 760 aaPredicted RBP27.25■■□□□ 1.95
CHMP1A-208ENST00000550102 REREQ9P2R6 1566 aa27.24■■□□□ 1.95
CHMP1A-208ENST00000550102 KIAA1107Q9UPP5 1409 aa27.24■■□□□ 1.95
CHMP1A-208ENST00000550102 INO80Q9ULG1 1556 aaPredicted RBP27.21■■□□□ 1.95
CHMP1A-208ENST00000550102 RIMS1Q86UR5 1692 aaKnown RBP27.21■■□□□ 1.95
CHMP1A-208ENST00000550102 FER1L4A9Z1Z3 1794 aa27.2■■□□□ 1.94
CHMP1A-208ENST00000550102 MYT1LQ9UL68 1186 aa27.18■■□□□ 1.94
CHMP1A-208ENST00000550102 ATP7AQ04656 1500 aa27.17■■□□□ 1.94
CHMP1A-208ENST00000550102 CAMSAP2Q08AD1 1489 aa27.16■■□□□ 1.94
CHMP1A-208ENST00000550102 PTPRMP28827 1452 aa27.14■■□□□ 1.94
CHMP1A-208ENST00000550102 HNRNPMP52272 730 aaKnown RBP eCLIP27.12■■□□□ 1.93
CHMP1A-208ENST00000550102 APLP2Q06481 763 aa27.12■■□□□ 1.93
CHMP1A-208ENST00000550102 KANK4Q5T7N3 995 aaPredicted RBP27.11■■□□□ 1.93
CHMP1A-208ENST00000550102 MBD5Q9P267 1494 aa27.1■■□□□ 1.93
CHMP1A-208ENST00000550102 SPAG9O60271 1321 aaKnown RBP27.1■■□□□ 1.93
CHMP1A-208ENST00000550102 ZNF644Q9H582 1327 aaPredicted RBP27.1■■□□□ 1.93
CHMP1A-208ENST00000550102 AGLP35573 1532 aa27.1■■□□□ 1.93
CHMP1A-208ENST00000550102 ADGBQ8N7X0 1667 aa27.09■■□□□ 1.93
CHMP1A-208ENST00000550102 CCDC141Q6ZP82 1450 aa27.07■■□□□ 1.92
CHMP1A-208ENST00000550102 ARHGEF5Q12774 1597 aa27.07■■□□□ 1.92
CHMP1A-208ENST00000550102 MYOM3Q5VTT5 1437 aa27.07■■□□□ 1.92
CHMP1A-208ENST00000550102 PLXNC1O60486 1568 aa27.05■■□□□ 1.92
CHMP1A-208ENST00000550102 MIA2Q96PC5 1412 aa27.02■■□□□ 1.92
CHMP1A-208ENST00000550102 MLECQ14165 292 aa27.02■■□□□ 1.92
CHMP1A-208ENST00000550102 RTEL1-TNFRSF6BF6WH68 1400 aa26.99■■□□□ 1.91
CHMP1A-208ENST00000550102 A2MP01023 1474 aa26.98■■□□□ 1.91
CHMP1A-208ENST00000550102 PTPN23Q9H3S7 1636 aa26.96■■□□□ 1.91
CHMP1A-208ENST00000550102 CROCC2H7BZ55 1655 aa26.95■■□□□ 1.9
CHMP1A-208ENST00000550102 MAST1Q9Y2H9 1570 aa26.94■■□□□ 1.9
CHMP1A-208ENST00000550102 RSPH4AQ5TD94 716 aa26.93■■□□□ 1.9
CHMP1A-208ENST00000550102 MROH2AA6NES4 1674 aa26.9■■□□□ 1.9
CHMP1A-208ENST00000550102 C3P01024 1663 aa26.9■■□□□ 1.9
CHMP1A-208ENST00000550102 FGD6Q6ZV73 1430 aa26.9■■□□□ 1.9
CHMP1A-208ENST00000550102 CNTLNQ9NXG0 1405 aa26.86■■□□□ 1.89
CHMP1A-208ENST00000550102 TCOF1Q13428 1488 aaKnown RBP26.86■■□□□ 1.89
CHMP1A-208ENST00000550102 PREX1Q8TCU6 1659 aa26.85■■□□□ 1.89
CHMP1A-208ENST00000550102 DNMT1P26358 1616 aaKnown RBP26.85■■□□□ 1.89
CHMP1A-208ENST00000550102 CLTCQ00610 1675 aaKnown RBP26.84■■□□□ 1.89
CHMP1A-208ENST00000550102 LMTK3Q96Q04 1460 aa26.83■■□□□ 1.89
CHMP1A-208ENST00000550102 SHANK2Q9UPX8 1470 aa26.83■■□□□ 1.89
CHMP1A-208ENST00000550102 TSPY4P0CV99 314 aa26.82■■□□□ 1.88
CHMP1A-208ENST00000550102 TSPY10P0CW01 314 aa26.82■■□□□ 1.88
CHMP1A-208ENST00000550102 PLPPR3Q6T4P5 718 aa26.82■■□□□ 1.88
CHMP1A-208ENST00000550102 ESF1Q9H501 851 aaKnown RBP26.82■■□□□ 1.88
CHMP1A-208ENST00000550102 DHX29Q7Z478 1369 aaKnown RBP26.81■■□□□ 1.88
CHMP1A-208ENST00000550102 EIF2AK4Q9P2K8 1649 aaKnown RBP26.79■■□□□ 1.88
CHMP1A-208ENST00000550102 SETD1BQ9UPS6 1966 aaKnown RBP26.77■■□□□ 1.88
CHMP1A-208ENST00000550102 FAM135AQ9P2D6 1515 aa26.76■■□□□ 1.87
CHMP1A-208ENST00000550102 DAPK1P53355 1430 aa26.75■■□□□ 1.87
CHMP1A-208ENST00000550102 RNF17Q9BXT8 1623 aaKnown RBP26.75■■□□□ 1.87
CHMP1A-208ENST00000550102 ABCC5O15440 1437 aa26.74■■□□□ 1.87
CHMP1A-208ENST00000550102 CEBPAP49715 358 aaPredicted RBP26.72■■□□□ 1.87
CHMP1A-208ENST00000550102 KDM5DQ9BY66 1539 aa26.71■■□□□ 1.87
CHMP1A-208ENST00000550102 DUOX2Q9NRD8 1548 aa26.71■■□□□ 1.87
CHMP1A-208ENST00000550102 GGT6Q6P531 493 aa26.7■■□□□ 1.86
CHMP1A-208ENST00000550102 PPP6R1Q9UPN7 881 aa26.68■■□□□ 1.86
CHMP1A-208ENST00000550102 ZC3H13Q5T200 1668 aaKnown RBP26.68■■□□□ 1.86
CHMP1A-208ENST00000550102 UHRF1BP1Q6BDS2 1440 aa26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms