RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 POGZQ7Z3K3 1410 aa30.04■■■□□ 2.4
CHMP1A-207ENST00000549328 ARHGAP5Q13017 1502 aa30.01■■■□□ 2.4
CHMP1A-207ENST00000549328 ARID4BQ4LE39 1312 aaPredicted RBP30■■■□□ 2.39
CHMP1A-207ENST00000549328 CEP162Q5TB80 1403 aa29.99■■■□□ 2.39
CHMP1A-207ENST00000549328 ZFYVE16Q7Z3T8 1539 aa29.98■■■□□ 2.39
CHMP1A-207ENST00000549328 ADAMTSL3P82987 1691 aa29.98■■■□□ 2.39
CHMP1A-207ENST00000549328 YEATS2Q9ULM3 1422 aa29.96■■■□□ 2.39
CHMP1A-207ENST00000549328 CDC42BPBQ9Y5S2 1711 aa29.95■■■□□ 2.38
CHMP1A-207ENST00000549328 BCORL1Q5H9F3 1711 aa29.94■■■□□ 2.38
CHMP1A-207ENST00000549328 ZNF518AQ6AHZ1 1483 aa29.93■■■□□ 2.38
CHMP1A-207ENST00000549328 PREX2Q70Z35 1606 aa29.93■■■□□ 2.38
CHMP1A-207ENST00000549328 AFAP1Q8N556 730 aa29.89■■■□□ 2.38
CHMP1A-207ENST00000549328 PTPRMP28827 1452 aa29.88■■■□□ 2.37
CHMP1A-207ENST00000549328 ATP10AO60312 1499 aa29.87■■■□□ 2.37
CHMP1A-207ENST00000549328 KDM5CP41229 1560 aa29.86■■■□□ 2.37
CHMP1A-207ENST00000549328 LOC105371045A0A1W2PR82 267 aa29.86■■■□□ 2.37
CHMP1A-207ENST00000549328 CDC42BPAQ5VT25 1732 aa29.85■■■□□ 2.37
CHMP1A-207ENST00000549328 MTUS2Q5JR59 1369 aa29.85■■■□□ 2.37
CHMP1A-207ENST00000549328 MADDQ8WXG6 1647 aa29.82■■■□□ 2.36
CHMP1A-207ENST00000549328 ABCC1P33527 1531 aa29.82■■■□□ 2.36
CHMP1A-207ENST00000549328 GPATCH8Q9UKJ3 1502 aaKnown RBP29.82■■■□□ 2.36
CHMP1A-207ENST00000549328 C9orf84Q5VXU9 1444 aa29.81■■■□□ 2.36
CHMP1A-207ENST00000549328 HECW2Q9P2P5 1572 aa29.81■■■□□ 2.36
CHMP1A-207ENST00000549328 ARHGEF12Q9NZN5 1544 aa29.8■■■□□ 2.36
CHMP1A-207ENST00000549328 SIGLEC1Q9BZZ2 1709 aa29.79■■■□□ 2.36
CHMP1A-207ENST00000549328 MLH3Q9UHC1 1453 aa29.79■■■□□ 2.36
CHMP1A-207ENST00000549328 TRAPPC8Q9Y2L5 1435 aa29.79■■■□□ 2.36
CHMP1A-207ENST00000549328 CCNB3Q8WWL7 1395 aa29.77■■■□□ 2.36
CHMP1A-207ENST00000549328 MYT1LQ9UL68 1186 aa29.76■■■□□ 2.35
CHMP1A-207ENST00000549328 CFDP1Q9UEE9 299 aaPredicted RBP29.75■■■□□ 2.35
CHMP1A-207ENST00000549328 ZNF777Q9ULD5 760 aaPredicted RBP29.75■■■□□ 2.35
CHMP1A-207ENST00000549328 ITSN2Q9NZM3 1697 aa29.75■■■□□ 2.35
CHMP1A-207ENST00000549328 EHBP1L1Q8N3D4 1523 aa29.73■■■□□ 2.35
CHMP1A-207ENST00000549328 MLECQ14165 292 aa29.72■■■□□ 2.35
CHMP1A-207ENST00000549328 SAMD9LQ8IVG5 1584 aa29.72■■■□□ 2.35
CHMP1A-207ENST00000549328 RIMS1Q86UR5 1692 aaKnown RBP29.71■■■□□ 2.35
CHMP1A-207ENST00000549328 KIAA1107Q9UPP5 1409 aa29.71■■■□□ 2.35
CHMP1A-207ENST00000549328 DIP2CQ9Y2E4 1556 aa29.7■■■□□ 2.35
CHMP1A-207ENST00000549328 REREQ9P2R6 1566 aa29.69■■■□□ 2.34
CHMP1A-207ENST00000549328 PLEKHH2Q8IVE3 1493 aa29.69■■■□□ 2.34
CHMP1A-207ENST00000549328 VPS8Q8N3P4 1428 aa29.68■■■□□ 2.34
CHMP1A-207ENST00000549328 HNRNPMP52272 730 aaKnown RBP eCLIP29.66■■■□□ 2.34
CHMP1A-207ENST00000549328 SYCP2Q9BX26 1530 aa29.66■■■□□ 2.34
CHMP1A-207ENST00000549328 ABCA6Q8N139 1617 aa29.65■■■□□ 2.34
CHMP1A-207ENST00000549328 KIDINS220Q9ULH0 1771 aa29.63■■■□□ 2.33
CHMP1A-207ENST00000549328 TIAM1Q13009 1591 aa29.63■■■□□ 2.33
CHMP1A-207ENST00000549328 FER1L4A9Z1Z3 1794 aa29.62■■■□□ 2.33
CHMP1A-207ENST00000549328 SPAG9O60271 1321 aaKnown RBP29.61■■■□□ 2.33
CHMP1A-207ENST00000549328 AGLP35573 1532 aa29.61■■■□□ 2.33
CHMP1A-207ENST00000549328 NCOA2Q15596 1464 aa29.56■■■□□ 2.32
CHMP1A-207ENST00000549328 SUPT6HQ7KZ85 1726 aaKnown RBP29.56■■■□□ 2.32
CHMP1A-207ENST00000549328 ZNF644Q9H582 1327 aaPredicted RBP29.55■■■□□ 2.32
CHMP1A-207ENST00000549328 LMTK3Q96Q04 1460 aa29.54■■■□□ 2.32
CHMP1A-207ENST00000549328 PLPPR3Q6T4P5 718 aa29.53■■■□□ 2.32
CHMP1A-207ENST00000549328 MAP3K1Q13233 1512 aa29.53■■■□□ 2.32
CHMP1A-207ENST00000549328 ATP7AQ04656 1500 aa29.51■■■□□ 2.32
CHMP1A-207ENST00000549328 LRRC9Q6ZRR7 1453 aa29.51■■■□□ 2.31
CHMP1A-207ENST00000549328 MBD5Q9P267 1494 aa29.51■■■□□ 2.31
CHMP1A-207ENST00000549328 INO80Q9ULG1 1556 aaPredicted RBP29.48■■■□□ 2.31
CHMP1A-207ENST00000549328 RSPH4AQ5TD94 716 aa29.46■■■□□ 2.31
CHMP1A-207ENST00000549328 ESF1Q9H501 851 aaKnown RBP29.46■■■□□ 2.31
CHMP1A-207ENST00000549328 CEBPAP49715 358 aaPredicted RBP29.45■■■□□ 2.31
CHMP1A-207ENST00000549328 RTEL1-TNFRSF6BF6WH68 1400 aa29.44■■■□□ 2.3
CHMP1A-207ENST00000549328 A2MP01023 1474 aa29.42■■■□□ 2.3
CHMP1A-207ENST00000549328 KANK4Q5T7N3 995 aaPredicted RBP29.42■■■□□ 2.3
CHMP1A-207ENST00000549328 CNTLNQ9NXG0 1405 aa29.41■■■□□ 2.3
CHMP1A-207ENST00000549328 CAMSAP2Q08AD1 1489 aa29.4■■■□□ 2.3
CHMP1A-207ENST00000549328 PLXNC1O60486 1568 aa29.39■■■□□ 2.3
CHMP1A-207ENST00000549328 SETD1BQ9UPS6 1966 aaKnown RBP29.37■■■□□ 2.29
CHMP1A-207ENST00000549328 CCDC141Q6ZP82 1450 aa29.37■■■□□ 2.29
CHMP1A-207ENST00000549328 HSPA2P54652 639 aa29.37■■■□□ 2.29
CHMP1A-207ENST00000549328 ADGBQ8N7X0 1667 aa29.36■■■□□ 2.29
CHMP1A-207ENST00000549328 APLP2Q06481 763 aa29.35■■■□□ 2.29
CHMP1A-207ENST00000549328 PREX1Q8TCU6 1659 aa29.34■■■□□ 2.29
CHMP1A-207ENST00000549328 C3P01024 1663 aa29.33■■■□□ 2.29
CHMP1A-207ENST00000549328 PPP6R1Q9UPN7 881 aa29.32■■■□□ 2.28
CHMP1A-207ENST00000549328 ARHGEF5Q12774 1597 aa29.31■■■□□ 2.28
CHMP1A-207ENST00000549328 DHX29Q7Z478 1369 aaKnown RBP29.31■■■□□ 2.28
CHMP1A-207ENST00000549328 MIA2Q96PC5 1412 aa29.3■■■□□ 2.28
CHMP1A-207ENST00000549328 TSPY4P0CV99 314 aa29.3■■■□□ 2.28
CHMP1A-207ENST00000549328 TSPY10P0CW01 314 aa29.3■■■□□ 2.28
CHMP1A-207ENST00000549328 MYOM3Q5VTT5 1437 aa29.29■■■□□ 2.28
CHMP1A-207ENST00000549328 UHRF1BP1Q6BDS2 1440 aa29.29■■■□□ 2.28
CHMP1A-207ENST00000549328 GGT6Q6P531 493 aa29.28■■■□□ 2.28
CHMP1A-207ENST00000549328 MROH2AA6NES4 1674 aa29.28■■■□□ 2.28
CHMP1A-207ENST00000549328 ZMYM3Q14202 1370 aa29.27■■■□□ 2.28
CHMP1A-207ENST00000549328 NPATQ14207 1427 aa29.23■■■□□ 2.27
CHMP1A-207ENST00000549328 ILDR1Q86SU0 546 aaPredicted RBP29.22■■■□□ 2.27
CHMP1A-207ENST00000549328 CLTCQ00610 1675 aaKnown RBP29.18■■■□□ 2.26
CHMP1A-207ENST00000549328 KIF3BO15066 747 aa29.18■■■□□ 2.26
CHMP1A-207ENST00000549328 MAST1Q9Y2H9 1570 aa29.16■■■□□ 2.26
CHMP1A-207ENST00000549328 DMRT2Q9Y5R5 561 aa29.13■■■□□ 2.25
CHMP1A-207ENST00000549328 PTPRKQ15262 1439 aa29.11■■■□□ 2.25
CHMP1A-207ENST00000549328 FAM135AQ9P2D6 1515 aa29.1■■■□□ 2.25
CHMP1A-207ENST00000549328 STRCQ7RTU9 1775 aa29.08■■■□□ 2.25
CHMP1A-207ENST00000549328 PTPN23Q9H3S7 1636 aa29.06■■■□□ 2.24
CHMP1A-207ENST00000549328 FGD6Q6ZV73 1430 aa29.06■■■□□ 2.24
CHMP1A-207ENST00000549328 WASHC2CQ9Y4E1 1318 aa29.05■■■□□ 2.24
CHMP1A-207ENST00000549328 KDM5DQ9BY66 1539 aa29.04■■■□□ 2.24
CHMP1A-207ENST00000549328 FBXO41Q8TF61 875 aa29.03■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms