RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 CDK11AQ9UQ88 783 aaPredicted RBP12.09□□□□□ -0.47
TDP1-204ENST00000545686 MPHOSPH9Q99550 1183 aa12.08□□□□□ -0.48
TDP1-204ENST00000545686 DAPK1P53355 1430 aa12.07□□□□□ -0.48
TDP1-204ENST00000545686 ANKRD30BQ9BXX2 1392 aa12.07□□□□□ -0.48
TDP1-204ENST00000545686 ITSN2Q9NZM3 1697 aa12.07□□□□□ -0.48
TDP1-204ENST00000545686 ZBED9Q6R2W3 1325 aa12.06□□□□□ -0.48
TDP1-204ENST00000545686 SPATA31E1Q6ZUB1 1445 aa12.06□□□□□ -0.48
TDP1-204ENST00000545686 PPP4R2Q9NY27 417 aa12.05□□□□□ -0.48
TDP1-204ENST00000545686 CROCC2H7BZ55 1655 aa12.05□□□□□ -0.48
TDP1-204ENST00000545686 PRKRIP1Q9H875 184 aaPredicted RBP12.05□□□□□ -0.48
TDP1-204ENST00000545686 KIAA0556O60303 1618 aa12.05□□□□□ -0.48
TDP1-204ENST00000545686 L3MBTL2Q969R5 705 aa12.04□□□□□ -0.48
TDP1-204ENST00000545686 CHIC2Q9UKJ5 165 aa12.04□□□□□ -0.48
TDP1-204ENST00000545686 KIF14Q15058 1648 aa12.04□□□□□ -0.48
TDP1-204ENST00000545686 RAPGEF6Q8TEU7 1601 aa12.04□□□□□ -0.48
TDP1-204ENST00000545686 MBD5Q9P267 1494 aa12.02□□□□□ -0.48
TDP1-204ENST00000545686 ABCC5O15440 1437 aa12.02□□□□□ -0.49
TDP1-204ENST00000545686 ADCY10Q96PN6 1610 aa12.02□□□□□ -0.49
TDP1-204ENST00000545686 MSH5O43196 834 aa12.02□□□□□ -0.49
TDP1-204ENST00000545686 BCL11AQ9H165 835 aa12□□□□□ -0.49
TDP1-204ENST00000545686 MRS2Q9HD23 443 aa11.99□□□□□ -0.49
TDP1-204ENST00000545686 PZPP20742 1482 aa11.99□□□□□ -0.49
TDP1-204ENST00000545686 ADGRL2O95490 1459 aa11.98□□□□□ -0.49
TDP1-204ENST00000545686 NUP153P49790 1475 aaKnown RBP11.98□□□□□ -0.49
TDP1-204ENST00000545686 C11orf95C9JLR9 678 aaPredicted RBP11.98□□□□□ -0.49
TDP1-204ENST00000545686 IRX6P78412 446 aaPredicted RBP11.98□□□□□ -0.49
TDP1-204ENST00000545686 CCDC184Q52MB2 194 aa11.98□□□□□ -0.49
TDP1-204ENST00000545686 KIF7Q2M1P5 1343 aa11.98□□□□□ -0.49
TDP1-204ENST00000545686 BCORL1Q5H9F3 1711 aa11.98□□□□□ -0.49
TDP1-204ENST00000545686 DISP1Q96F81 1524 aa11.98□□□□□ -0.49
TDP1-204ENST00000545686 KDM5CP41229 1560 aa11.98□□□□□ -0.49
TDP1-204ENST00000545686 SMG6Q86US8 1419 aaKnown RBP11.97□□□□□ -0.49
TDP1-204ENST00000545686 KIAA0586Q9BVV6 1533 aa11.97□□□□□ -0.49
TDP1-204ENST00000545686 AEBP2Q6ZN18 517 aaPredicted RBP11.97□□□□□ -0.49
TDP1-204ENST00000545686 MYT1LQ9UL68 1186 aa11.97□□□□□ -0.49
TDP1-204ENST00000545686 NBPF8Q3BBV2 869 aa11.97□□□□□ -0.49
TDP1-204ENST00000545686 MRC2Q9UBG0 1479 aa11.97□□□□□ -0.49
TDP1-204ENST00000545686 ARID4BQ4LE39 1312 aaPredicted RBP11.96□□□□□ -0.49
TDP1-204ENST00000545686 ERICH6Q7L0X2 663 aa11.96□□□□□ -0.5
TDP1-204ENST00000545686 CAMSAP2Q08AD1 1489 aa11.96□□□□□ -0.5
TDP1-204ENST00000545686 FAM9BQ8IZU0 186 aa11.95□□□□□ -0.5
TDP1-204ENST00000545686 KIAA1107Q9UPP5 1409 aa11.94□□□□□ -0.5
TDP1-204ENST00000545686 DHX29Q7Z478 1369 aaKnown RBP11.94□□□□□ -0.5
TDP1-204ENST00000545686 FOXD1Q16676 465 aa11.94□□□□□ -0.5
TDP1-204ENST00000545686 IFT140Q96RY7 1462 aa11.93□□□□□ -0.5
TDP1-204ENST00000545686 TROQ12816 1431 aaPredicted RBP11.93□□□□□ -0.5
TDP1-204ENST00000545686 SLC4A1APQ9BWU0 796 aaKnown RBP11.93□□□□□ -0.5
TDP1-204ENST00000545686 ARHGEF12Q9NZN5 1544 aa11.93□□□□□ -0.5
TDP1-204ENST00000545686 E9PCH4 1651 aa11.92□□□□□ -0.5
TDP1-204ENST00000545686 UHRF1BP1Q6BDS2 1440 aa11.92□□□□□ -0.5
TDP1-204ENST00000545686 ROCK2O75116 1388 aaKnown RBP11.92□□□□□ -0.5
TDP1-204ENST00000545686 RNF123Q5XPI4 1314 aa11.92□□□□□ -0.5
TDP1-204ENST00000545686 RALGAPBQ86X10 1494 aa11.92□□□□□ -0.5
TDP1-204ENST00000545686 KDM5DQ9BY66 1539 aa11.91□□□□□ -0.5
TDP1-204ENST00000545686 USP47Q96K76 1375 aa11.91□□□□□ -0.5
TDP1-204ENST00000545686 SHANK2Q9UPX8 1470 aa11.9□□□□□ -0.5
TDP1-204ENST00000545686 CDC42BPAQ5VT25 1732 aa11.9□□□□□ -0.5
TDP1-204ENST00000545686 GRIN2AQ12879 1464 aa11.9□□□□□ -0.5
TDP1-204ENST00000545686 GPATCH8Q9UKJ3 1502 aaKnown RBP11.89□□□□□ -0.51
TDP1-204ENST00000545686 NUDCQ9Y266 331 aa11.89□□□□□ -0.51
TDP1-204ENST00000545686 EIF4G3O43432 1585 aaKnown RBP11.89□□□□□ -0.51
TDP1-204ENST00000545686 B4GALNT3Q6L9W6 998 aa11.88□□□□□ -0.51
TDP1-204ENST00000545686 KTN1Q86UP2 1357 aaKnown RBP11.88□□□□□ -0.51
TDP1-204ENST00000545686 ZNF644Q9H582 1327 aaPredicted RBP11.87□□□□□ -0.51
TDP1-204ENST00000545686 CEP170Q5SW79 1584 aa11.87□□□□□ -0.51
TDP1-204ENST00000545686 ANKRD30AQ9BXX3 1397 aa11.87□□□□□ -0.51
TDP1-204ENST00000545686 ZNF608Q9ULD9 1512 aaPredicted RBP11.85□□□□□ -0.51
TDP1-204ENST00000545686 PRG4Q92954 1404 aaPredicted RBP11.85□□□□□ -0.51
TDP1-204ENST00000545686 MAGI1Q96QZ7 1491 aaPredicted RBP11.84□□□□□ -0.51
TDP1-204ENST00000545686 ANKRD50Q9ULJ7 1429 aa11.84□□□□□ -0.51
TDP1-204ENST00000545686 ARID3CA6NKF2 412 aa11.83□□□□□ -0.52
TDP1-204ENST00000545686 CFDP1Q9UEE9 299 aaPredicted RBP11.83□□□□□ -0.52
TDP1-204ENST00000545686 KIF15Q9NS87 1388 aa11.83□□□□□ -0.52
TDP1-204ENST00000545686 LRPPRCP42704 1394 aaKnown RBP11.83□□□□□ -0.52
TDP1-204ENST00000545686 ARHGEF5Q12774 1597 aa11.83□□□□□ -0.52
TDP1-204ENST00000545686 BRD4O60885 1362 aaPredicted RBP11.82□□□□□ -0.52
TDP1-204ENST00000545686 NOP58Q9Y2X3 529 aaKnown RBP11.81□□□□□ -0.52
TDP1-204ENST00000545686 LAMC1P11047 1609 aa11.81□□□□□ -0.52
TDP1-204ENST00000545686 PTPRGP23470 1445 aa11.81□□□□□ -0.52
TDP1-204ENST00000545686 PNISRQ8TF01 805 aaKnown RBP11.81□□□□□ -0.52
TDP1-204ENST00000545686 PLB1Q6P1J6 1458 aa11.8□□□□□ -0.52
TDP1-204ENST00000545686 TRPM1Q7Z4N2 1603 aa11.8□□□□□ -0.52
TDP1-204ENST00000545686 PKD2Q13563 968 aa11.8□□□□□ -0.52
TDP1-204ENST00000545686 ABCA8O94911 1581 aa11.8□□□□□ -0.52
TDP1-204ENST00000545686 ABCC10Q5T3U5 1492 aa11.8□□□□□ -0.52
TDP1-204ENST00000545686 C9orf84Q5VXU9 1444 aa11.8□□□□□ -0.52
TDP1-204ENST00000545686 CCDC136Q96JN2 1154 aa11.79□□□□□ -0.52
TDP1-204ENST00000545686 ZMYM4Q5VZL5 1548 aa11.79□□□□□ -0.52
TDP1-204ENST00000545686 SYNJ2O15056 1496 aa11.79□□□□□ -0.52
TDP1-204ENST00000545686 CARMIL2Q6F5E8 1435 aa11.79□□□□□ -0.52
TDP1-204ENST00000545686 MYBBP1AQ9BQG0 1328 aaKnown RBP11.78□□□□□ -0.52
TDP1-204ENST00000545686 RALBP1Q15311 655 aa11.78□□□□□ -0.52
TDP1-204ENST00000545686 TMC1Q8TDI8 760 aa11.77□□□□□ -0.53
TDP1-204ENST00000545686 ANP32AP39687 249 aaKnown RBP11.77□□□□□ -0.53
TDP1-204ENST00000545686 NUP155O75694 1391 aa11.76□□□□□ -0.53
TDP1-204ENST00000545686 INSRP06213 1382 aa11.76□□□□□ -0.53
TDP1-204ENST00000545686 DNAJC5BQ9UF47 199 aa11.76□□□□□ -0.53
TDP1-204ENST00000545686 MYO5CQ9NQX4 1742 aa11.75□□□□□ -0.53
TDP1-204ENST00000545686 NUP160Q12769 1436 aa11.75□□□□□ -0.53
TDP1-204ENST00000545686 CARD11Q9BXL7 1154 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms