RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 POGZQ7Z3K3 1410 aa25.53■■□□□ 1.68
VPS33A-206ENST00000542310 ZFYVE16Q7Z3T8 1539 aa25.52■■□□□ 1.68
VPS33A-206ENST00000542310 HECW2Q9P2P5 1572 aa25.52■■□□□ 1.68
VPS33A-206ENST00000542310 PREX2Q70Z35 1606 aa25.48■■□□□ 1.67
VPS33A-206ENST00000542310 SCAPERQ9BY12 1400 aa25.46■■□□□ 1.67
VPS33A-206ENST00000542310 MADDQ8WXG6 1647 aa25.46■■□□□ 1.67
VPS33A-206ENST00000542310 ARHGAP5Q13017 1502 aa25.46■■□□□ 1.67
VPS33A-206ENST00000542310 CDC42BPBQ9Y5S2 1711 aa25.46■■□□□ 1.67
VPS33A-206ENST00000542310 PTPRMP28827 1452 aa25.44■■□□□ 1.66
VPS33A-206ENST00000542310 EFCAB2Q5VUJ9 269 aa25.43■■□□□ 1.66
VPS33A-206ENST00000542310 KDM5CP41229 1560 aa25.43■■□□□ 1.66
VPS33A-206ENST00000542310 ZNF518AQ6AHZ1 1483 aa25.41■■□□□ 1.66
VPS33A-206ENST00000542310 SIGLEC1Q9BZZ2 1709 aa25.41■■□□□ 1.66
VPS33A-206ENST00000542310 YEATS2Q9ULM3 1422 aa25.41■■□□□ 1.66
VPS33A-206ENST00000542310 CDC42BPAQ5VT25 1732 aa25.39■■□□□ 1.65
VPS33A-206ENST00000542310 RIMS1Q86UR5 1692 aaKnown RBP25.38■■□□□ 1.65
VPS33A-206ENST00000542310 ARID4BQ4LE39 1312 aaPredicted RBP25.37■■□□□ 1.65
VPS33A-206ENST00000542310 ABCC1P33527 1531 aa25.37■■□□□ 1.65
VPS33A-206ENST00000542310 ITSN2Q9NZM3 1697 aa25.36■■□□□ 1.65
VPS33A-206ENST00000542310 C9orf84Q5VXU9 1444 aa25.34■■□□□ 1.65
VPS33A-206ENST00000542310 FER1L4A9Z1Z3 1794 aa25.33■■□□□ 1.65
VPS33A-206ENST00000542310 ATP10AO60312 1499 aa25.33■■□□□ 1.65
VPS33A-206ENST00000542310 REREQ9P2R6 1566 aa25.31■■□□□ 1.64
VPS33A-206ENST00000542310 DIP2CQ9Y2E4 1556 aa25.28■■□□□ 1.64
VPS33A-206ENST00000542310 CEP162Q5TB80 1403 aa25.27■■□□□ 1.64
VPS33A-206ENST00000542310 MLH3Q9UHC1 1453 aa25.27■■□□□ 1.64
VPS33A-206ENST00000542310 ARHGEF12Q9NZN5 1544 aa25.27■■□□□ 1.64
VPS33A-206ENST00000542310 ABCA6Q8N139 1617 aa25.26■■□□□ 1.63
VPS33A-206ENST00000542310 SAMD9LQ8IVG5 1584 aa25.23■■□□□ 1.63
VPS33A-206ENST00000542310 EHBP1L1Q8N3D4 1523 aa25.22■■□□□ 1.63
VPS33A-206ENST00000542310 GPATCH8Q9UKJ3 1502 aaKnown RBP25.22■■□□□ 1.63
VPS33A-206ENST00000542310 TRAPPC8Q9Y2L5 1435 aa25.2■■□□□ 1.63
VPS33A-206ENST00000542310 KIDINS220Q9ULH0 1771 aa25.2■■□□□ 1.62
VPS33A-206ENST00000542310 LMTK3Q96Q04 1460 aa25.2■■□□□ 1.62
VPS33A-206ENST00000542310 AFAP1Q8N556 730 aa25.19■■□□□ 1.62
VPS33A-206ENST00000542310 MTUS2Q5JR59 1369 aa25.18■■□□□ 1.62
VPS33A-206ENST00000542310 AGLP35573 1532 aa25.17■■□□□ 1.62
VPS33A-206ENST00000542310 SYCP2Q9BX26 1530 aa25.17■■□□□ 1.62
VPS33A-206ENST00000542310 PLEKHH2Q8IVE3 1493 aa25.16■■□□□ 1.62
VPS33A-206ENST00000542310 TIAM1Q13009 1591 aa25.14■■□□□ 1.62
VPS33A-206ENST00000542310 KIAA1107Q9UPP5 1409 aa25.13■■□□□ 1.61
VPS33A-206ENST00000542310 CCNB3Q8WWL7 1395 aa25.12■■□□□ 1.61
VPS33A-206ENST00000542310 INO80Q9ULG1 1556 aaPredicted RBP25.1■■□□□ 1.61
VPS33A-206ENST00000542310 MLECQ14165 292 aa25.1■■□□□ 1.61
VPS33A-206ENST00000542310 PREX1Q8TCU6 1659 aa25.09■■□□□ 1.61
VPS33A-206ENST00000542310 MYT1LQ9UL68 1186 aa25.08■■□□□ 1.61
VPS33A-206ENST00000542310 SUPT6HQ7KZ85 1726 aaKnown RBP25.08■■□□□ 1.61
VPS33A-206ENST00000542310 ATP7AQ04656 1500 aa25.07■■□□□ 1.6
VPS33A-206ENST00000542310 CFDP1Q9UEE9 299 aaPredicted RBP25.05■■□□□ 1.6
VPS33A-206ENST00000542310 PLXNC1O60486 1568 aa25.03■■□□□ 1.6
VPS33A-206ENST00000542310 ZNF777Q9ULD5 760 aaPredicted RBP25.03■■□□□ 1.6
VPS33A-206ENST00000542310 VPS8Q8N3P4 1428 aa25.03■■□□□ 1.6
VPS33A-206ENST00000542310 C3P01024 1663 aa25.02■■□□□ 1.6
VPS33A-206ENST00000542310 SETD1BQ9UPS6 1966 aaKnown RBP25■■□□□ 1.59
VPS33A-206ENST00000542310 SPAG9O60271 1321 aaKnown RBP25■■□□□ 1.59
VPS33A-206ENST00000542310 MROH2AA6NES4 1674 aa25■■□□□ 1.59
VPS33A-206ENST00000542310 ADGBQ8N7X0 1667 aa25■■□□□ 1.59
VPS33A-206ENST00000542310 CNTLNQ9NXG0 1405 aa24.99■■□□□ 1.59
VPS33A-206ENST00000542310 NCOA2Q15596 1464 aa24.98■■□□□ 1.59
VPS33A-206ENST00000542310 HNRNPMP52272 730 aaKnown RBP eCLIP24.96■■□□□ 1.59
VPS33A-206ENST00000542310 MBD5Q9P267 1494 aa24.96■■□□□ 1.59
VPS33A-206ENST00000542310 MAP3K1Q13233 1512 aa24.95■■□□□ 1.58
VPS33A-206ENST00000542310 PLPPR3Q6T4P5 718 aa24.94■■□□□ 1.58
VPS33A-206ENST00000542310 A2MP01023 1474 aa24.94■■□□□ 1.58
VPS33A-206ENST00000542310 ILDR1Q86SU0 546 aaPredicted RBP24.92■■□□□ 1.58
VPS33A-206ENST00000542310 CAMSAP2Q08AD1 1489 aa24.91■■□□□ 1.58
VPS33A-206ENST00000542310 LRRC9Q6ZRR7 1453 aa24.91■■□□□ 1.58
VPS33A-206ENST00000542310 RTEL1-TNFRSF6BF6WH68 1400 aa24.91■■□□□ 1.58
VPS33A-206ENST00000542310 UHRF1BP1Q6BDS2 1440 aa24.91■■□□□ 1.58
VPS33A-206ENST00000542310 CCDC141Q6ZP82 1450 aa24.89■■□□□ 1.58
VPS33A-206ENST00000542310 LOC105371045A0A1W2PR82 267 aa24.88■■□□□ 1.57
VPS33A-206ENST00000542310 HSPA2P54652 639 aa24.88■■□□□ 1.57
VPS33A-206ENST00000542310 ESF1Q9H501 851 aaKnown RBP24.88■■□□□ 1.57
VPS33A-206ENST00000542310 ARHGEF5Q12774 1597 aa24.88■■□□□ 1.57
VPS33A-206ENST00000542310 CEBPAP49715 358 aaPredicted RBP24.87■■□□□ 1.57
VPS33A-206ENST00000542310 ZNF644Q9H582 1327 aaPredicted RBP24.86■■□□□ 1.57
VPS33A-206ENST00000542310 CLTCQ00610 1675 aaKnown RBP24.85■■□□□ 1.57
VPS33A-206ENST00000542310 NPATQ14207 1427 aa24.84■■□□□ 1.57
VPS33A-206ENST00000542310 STRCQ7RTU9 1775 aa24.82■■□□□ 1.56
VPS33A-206ENST00000542310 RSPH4AQ5TD94 716 aa24.81■■□□□ 1.56
VPS33A-206ENST00000542310 FAM135AQ9P2D6 1515 aa24.81■■□□□ 1.56
VPS33A-206ENST00000542310 ZNF142P52746 1687 aaPredicted RBP24.78■■□□□ 1.56
VPS33A-206ENST00000542310 MAST1Q9Y2H9 1570 aa24.77■■□□□ 1.56
VPS33A-206ENST00000542310 PPP6R1Q9UPN7 881 aa24.76■■□□□ 1.55
VPS33A-206ENST00000542310 ZMYM3Q14202 1370 aa24.76■■□□□ 1.55
VPS33A-206ENST00000542310 DHX29Q7Z478 1369 aaKnown RBP24.76■■□□□ 1.55
VPS33A-206ENST00000542310 MIA2Q96PC5 1412 aa24.75■■□□□ 1.55
VPS33A-206ENST00000542310 MYO3AQ8NEV4 1616 aa24.75■■□□□ 1.55
VPS33A-206ENST00000542310 MYOM3Q5VTT5 1437 aa24.73■■□□□ 1.55
VPS33A-206ENST00000542310 FBXO41Q8TF61 875 aa24.73■■□□□ 1.55
VPS33A-206ENST00000542310 KDM5DQ9BY66 1539 aa24.71■■□□□ 1.55
VPS33A-206ENST00000542310 PTPRKQ15262 1439 aa24.69■■□□□ 1.54
VPS33A-206ENST00000542310 DMRT2Q9Y5R5 561 aa24.69■■□□□ 1.54
VPS33A-206ENST00000542310 GGT6Q6P531 493 aa24.68■■□□□ 1.54
VPS33A-206ENST00000542310 PTPRTO14522 1441 aa24.68■■□□□ 1.54
VPS33A-206ENST00000542310 NCOA1Q15788 1441 aa24.68■■□□□ 1.54
VPS33A-206ENST00000542310 EIF2AK4Q9P2K8 1649 aaKnown RBP24.68■■□□□ 1.54
VPS33A-206ENST00000542310 KANK4Q5T7N3 995 aaPredicted RBP24.67■■□□□ 1.54
VPS33A-206ENST00000542310 RNF17Q9BXT8 1623 aaKnown RBP24.67■■□□□ 1.54
VPS33A-206ENST00000542310 CEP170BQ9Y4F5 1589 aaPredicted RBP24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms