RNA–Protein interactions for RNA: ENST00000538886.5

GGA3-202, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene GGA3, Length 3,766 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-202ENST00000538886 PHLDB1Q86UU1 1377 aa12.76□□□□□ -0.37
GGA3-202ENST00000538886 FYCO1Q9BQS8 1478 aa12.76□□□□□ -0.37
GGA3-202ENST00000538886 PCF11O94913 1555 aaKnown RBP12.75□□□□□ -0.37
GGA3-202ENST00000538886 RGL3Q3MIN7 710 aa12.75□□□□□ -0.37
GGA3-202ENST00000538886 FOXD1Q16676 465 aa12.74□□□□□ -0.37
GGA3-202ENST00000538886 NCOA2Q15596 1464 aa12.73□□□□□ -0.37
GGA3-202ENST00000538886 HECW1Q76N89 1606 aa12.73□□□□□ -0.37
GGA3-202ENST00000538886 RAPGEF6Q8TEU7 1601 aa12.73□□□□□ -0.37
GGA3-202ENST00000538886 LRRC9Q6ZRR7 1453 aa12.73□□□□□ -0.37
GGA3-202ENST00000538886 CEBPAP49715 358 aaPredicted RBP12.72□□□□□ -0.37
GGA3-202ENST00000538886 FANCAO15360 1455 aa12.71□□□□□ -0.37
GGA3-202ENST00000538886 KDM2AQ9Y2K7 1162 aa12.7□□□□□ -0.38
GGA3-202ENST00000538886 POLR3GLQ9BT43 218 aa12.7□□□□□ -0.38
GGA3-202ENST00000538886 PPP1R15AO75807 674 aaPredicted RBP12.7□□□□□ -0.38
GGA3-202ENST00000538886 RSPH4AQ5TD94 716 aa12.7□□□□□ -0.38
GGA3-202ENST00000538886 TSPOAP1O95153 1857 aa12.69□□□□□ -0.38
GGA3-202ENST00000538886 NUTM2DQ5VT03 806 aaPredicted RBP12.69□□□□□ -0.38
GGA3-202ENST00000538886 ADGRL1O94910 1474 aa12.69□□□□□ -0.38
GGA3-202ENST00000538886 GTF3C3Q9Y5Q9 886 aa12.68□□□□□ -0.38
GGA3-202ENST00000538886 AKNAQ7Z591 1439 aa12.67□□□□□ -0.38
GGA3-202ENST00000538886 ANKRD30AQ9BXX3 1397 aa12.66□□□□□ -0.38
GGA3-202ENST00000538886 MYOM3Q5VTT5 1437 aa12.66□□□□□ -0.38
GGA3-202ENST00000538886 CNGB1Q14028 1251 aaPredicted RBP12.65□□□□□ -0.38
GGA3-202ENST00000538886 NUP155O75694 1391 aa12.65□□□□□ -0.38
GGA3-202ENST00000538886 CENPBP07199 599 aaPredicted RBP12.65□□□□□ -0.39
GGA3-202ENST00000538886 BCL11AQ9H165 835 aa12.65□□□□□ -0.39
GGA3-202ENST00000538886 KDM5BQ9UGL1 1544 aa12.64□□□□□ -0.39
GGA3-202ENST00000538886 DENND4BO75064 1496 aaPredicted RBP12.63□□□□□ -0.39
GGA3-202ENST00000538886 FGD6Q6ZV73 1430 aa12.63□□□□□ -0.39
GGA3-202ENST00000538886 ADCY10Q96PN6 1610 aa12.63□□□□□ -0.39
GGA3-202ENST00000538886 KANK1Q14678 1352 aa12.62□□□□□ -0.39
GGA3-202ENST00000538886 ABCC10Q5T3U5 1492 aa12.62□□□□□ -0.39
GGA3-202ENST00000538886 SAMD9Q5K651 1589 aa12.62□□□□□ -0.39
GGA3-202ENST00000538886 PKD2Q13563 968 aa12.62□□□□□ -0.39
GGA3-202ENST00000538886 PLCH2O75038 1416 aa12.62□□□□□ -0.39
GGA3-202ENST00000538886 KIF15Q9NS87 1388 aa12.62□□□□□ -0.39
GGA3-202ENST00000538886 TEX14Q8IWB6 1497 aa12.61□□□□□ -0.39
GGA3-202ENST00000538886 ABCA8O94911 1581 aa12.6□□□□□ -0.39
GGA3-202ENST00000538886 TIAM1Q13009 1591 aa12.6□□□□□ -0.39
GGA3-202ENST00000538886 SLC24A1O60721 1099 aa12.6□□□□□ -0.39
GGA3-202ENST00000538886 KIF14Q15058 1648 aa12.6□□□□□ -0.39
GGA3-202ENST00000538886 C14orf37Q86TY3 774 aa12.6□□□□□ -0.39
GGA3-202ENST00000538886 UHRF1BP1LA0JNW5 1464 aa12.6□□□□□ -0.39
GGA3-202ENST00000538886 GPATCH8Q9UKJ3 1502 aaKnown RBP12.59□□□□□ -0.39
GGA3-202ENST00000538886 PLEKHG5O94827 1062 aa12.59□□□□□ -0.39
GGA3-202ENST00000538886 TRAPPC8Q9Y2L5 1435 aa12.58□□□□□ -0.4
GGA3-202ENST00000538886 ACIN1Q9UKV3 1341 aaKnown RBP12.58□□□□□ -0.4
GGA3-202ENST00000538886 EHBP1L1Q8N3D4 1523 aa12.58□□□□□ -0.4
GGA3-202ENST00000538886 ZCCHC11Q5TAX3 1644 aaKnown RBP12.57□□□□□ -0.4
GGA3-202ENST00000538886 SHROOM2Q13796 1616 aa12.57□□□□□ -0.4
GGA3-202ENST00000538886 FBXO31Q5XUX0 539 aaPredicted RBP12.56□□□□□ -0.4
GGA3-202ENST00000538886 HSPA2P54652 639 aa12.55□□□□□ -0.4
GGA3-202ENST00000538886 SIN3AQ96ST3 1273 aa12.55□□□□□ -0.4
GGA3-202ENST00000538886 C9orf84Q5VXU9 1444 aa12.54□□□□□ -0.4
GGA3-202ENST00000538886 MPHOSPH9Q99550 1183 aa12.52□□□□□ -0.4
GGA3-202ENST00000538886 MAGI3Q5TCQ9 1506 aa12.52□□□□□ -0.41
GGA3-202ENST00000538886 CAMSAP2Q08AD1 1489 aa12.52□□□□□ -0.41
GGA3-202ENST00000538886 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.51□□□□□ -0.41
GGA3-202ENST00000538886 PRKCSHP14314 528 aaPredicted RBP12.51□□□□□ -0.41
GGA3-202ENST00000538886 POGZQ7Z3K3 1410 aa12.5□□□□□ -0.41
GGA3-202ENST00000538886 SUPT6HQ7KZ85 1726 aaKnown RBP12.5□□□□□ -0.41
GGA3-202ENST00000538886 YEATS2Q9ULM3 1422 aa12.5□□□□□ -0.41
GGA3-202ENST00000538886 ANKRD50Q9ULJ7 1429 aa12.5□□□□□ -0.41
GGA3-202ENST00000538886 SYCP2Q9BX26 1530 aa12.5□□□□□ -0.41
GGA3-202ENST00000538886 RAB3GAP2Q9H2M9 1393 aa12.49□□□□□ -0.41
GGA3-202ENST00000538886 SAFB2Q14151 953 aaKnown RBP eCLIP12.49□□□□□ -0.41
GGA3-202ENST00000538886 PLEKHH2Q8IVE3 1493 aa12.49□□□□□ -0.41
GGA3-202ENST00000538886 STK26Q9P289 416 aa12.48□□□□□ -0.41
GGA3-202ENST00000538886 MIA2Q96PC5 1412 aa12.48□□□□□ -0.41
GGA3-202ENST00000538886 DCAF11Q8TEB1 546 aa12.48□□□□□ -0.41
GGA3-202ENST00000538886 ZEB1P37275 1124 aaPredicted RBP12.47□□□□□ -0.41
GGA3-202ENST00000538886 CCDC141Q6ZP82 1450 aa12.47□□□□□ -0.41
GGA3-202ENST00000538886 SETD5Q9C0A6 1442 aa12.47□□□□□ -0.41
GGA3-202ENST00000538886 EID1Q9Y6B2 187 aa12.47□□□□□ -0.41
GGA3-202ENST00000538886 DAPK1P53355 1430 aa12.47□□□□□ -0.41
GGA3-202ENST00000538886 ZNF518AQ6AHZ1 1483 aa12.46□□□□□ -0.41
GGA3-202ENST00000538886 ABCC5O15440 1437 aa12.46□□□□□ -0.41
GGA3-202ENST00000538886 TTC37Q6PGP7 1564 aa12.45□□□□□ -0.42
GGA3-202ENST00000538886 YTHDC1Q96MU7 727 aaKnown RBP12.45□□□□□ -0.42
GGA3-202ENST00000538886 TONSLQ96HA7 1378 aa12.45□□□□□ -0.42
GGA3-202ENST00000538886 KDM6BO15054 1643 aa12.44□□□□□ -0.42
GGA3-202ENST00000538886 COL17A1Q9UMD9 1497 aaPredicted RBP12.43□□□□□ -0.42
GGA3-202ENST00000538886 MAPKBP1O60336 1514 aa12.43□□□□□ -0.42
GGA3-202ENST00000538886 HIRIP3Q9BW71 556 aaPredicted RBP12.43□□□□□ -0.42
GGA3-202ENST00000538886 NUTM2FA1L443 756 aa12.42□□□□□ -0.42
GGA3-202ENST00000538886 TXNDC2Q86VQ3 553 aa12.42□□□□□ -0.42
GGA3-202ENST00000538886 SLC26A8Q96RN1 970 aa12.42□□□□□ -0.42
GGA3-202ENST00000538886 DHX29Q7Z478 1369 aaKnown RBP12.41□□□□□ -0.42
GGA3-202ENST00000538886 NEO1Q92859 1461 aa12.41□□□□□ -0.42
GGA3-202ENST00000538886 HDGFP51858 240 aaKnown RBP12.41□□□□□ -0.42
GGA3-202ENST00000538886 RBM33Q96EV2 1170 aaKnown RBP12.41□□□□□ -0.42
GGA3-202ENST00000538886 DIP2BQ9P265 1576 aa12.39□□□□□ -0.43
GGA3-202ENST00000538886 A2MP01023 1474 aa12.38□□□□□ -0.43
GGA3-202ENST00000538886 PTPN23Q9H3S7 1636 aa12.38□□□□□ -0.43
GGA3-202ENST00000538886 NCOA1Q15788 1441 aa12.38□□□□□ -0.43
GGA3-202ENST00000538886 PTPRKQ15262 1439 aa12.38□□□□□ -0.43
GGA3-202ENST00000538886 KIAA1107Q9UPP5 1409 aa12.37□□□□□ -0.43
GGA3-202ENST00000538886 IDI1Q13907 227 aa12.37□□□□□ -0.43
GGA3-202ENST00000538886 THEMISQ8N1K5 641 aaPredicted RBP12.37□□□□□ -0.43
GGA3-202ENST00000538886 POGKQ9P215 609 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms