RNA–Protein interactions for RNA: ENST00000538418.1

CD9-207, Transcript of CD9 molecule, humanhuman

TSL 2

Gene CD9, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-207ENST00000538418 KIF12Q96FN5 646 aa15.92■□□□□ 0.14
CD9-207ENST00000538418 PAK3O75914 559 aaPredicted RBP15.91■□□□□ 0.14
CD9-207ENST00000538418 MKRN3Q13064 507 aaKnown RBP15.86■□□□□ 0.13
CD9-207ENST00000538418 ARID3AQ99856 593 aa15.86■□□□□ 0.13
CD9-207ENST00000538418 FAM117AQ9C073 453 aa15.83■□□□□ 0.12
CD9-207ENST00000538418 PRKAR2AP13861 404 aaKnown RBP15.82■□□□□ 0.12
CD9-207ENST00000538418 PPP1R15BQ5SWA1 713 aa15.82■□□□□ 0.12
CD9-207ENST00000538418 ZNF316A6NFI3 1004 aaPredicted RBP15.81■□□□□ 0.12
CD9-207ENST00000538418 C1orf115Q9H7X2 142 aa15.81■□□□□ 0.12
CD9-207ENST00000538418 SPDYE16A6NNV3 312 aaPredicted RBP15.79■□□□□ 0.12
CD9-207ENST00000538418 HRCP23327 699 aa15.79■□□□□ 0.12
CD9-207ENST00000538418 GOLGA2Q08379 1002 aa15.78■□□□□ 0.12
CD9-207ENST00000538418 DPYSL4O14531 572 aa15.77■□□□□ 0.12
CD9-207ENST00000538418 GPR37O15354 613 aa15.76■□□□□ 0.11
CD9-207ENST00000538418 PDIA6Q15084 440 aa15.76■□□□□ 0.11
CD9-207ENST00000538418 DDRGK1Q96HY6 314 aa15.76■□□□□ 0.11
CD9-207ENST00000538418 GPHNQ9NQX3 736 aaPredicted RBP15.76■□□□□ 0.11
CD9-207ENST00000538418 PLEKHG3A1L390 1219 aa15.73■□□□□ 0.11
CD9-207ENST00000538418 FLIIQ13045 1269 aa15.73■□□□□ 0.11
CD9-207ENST00000538418 EMILIN3Q9NT22 766 aa15.73■□□□□ 0.11
CD9-207ENST00000538418 MINK1Q8N4C8 1332 aaPredicted RBP15.72■□□□□ 0.11
CD9-207ENST00000538418 ARID3CA6NKF2 412 aa15.71■□□□□ 0.11
CD9-207ENST00000538418 APBB1O00213 710 aa15.7■□□□□ 0.1
CD9-207ENST00000538418 MAP2K5Q13163 448 aa15.67■□□□□ 0.1
CD9-207ENST00000538418 CCDC102AQ96A19 550 aa15.66■□□□□ 0.1
CD9-207ENST00000538418 TMEM106CQ9BVX2 250 aa15.66■□□□□ 0.1
CD9-207ENST00000538418 AMHR2Q16671 573 aa15.65■□□□□ 0.1
CD9-207ENST00000538418 IRF6O14896 467 aa15.63■□□□□ 0.09
CD9-207ENST00000538418 NPM2Q86SE8 214 aaKnown RBP15.63■□□□□ 0.09
CD9-207ENST00000538418 FXR2P51116 673 aaKnown RBP eCLIP15.62■□□□□ 0.09
CD9-207ENST00000538418 DSG2Q14126 1118 aa15.62■□□□□ 0.09
CD9-207ENST00000538418 PARP9Q8IXQ6 854 aa15.62■□□□□ 0.09
CD9-207ENST00000538418 GOPCQ9HD26 462 aa15.6■□□□□ 0.09
CD9-207ENST00000538418 NUTM2FA1L443 756 aa15.58■□□□□ 0.08
CD9-207ENST00000538418 ONECUT3O60422 494 aaPredicted RBP15.58■□□□□ 0.08
CD9-207ENST00000538418 ZRANB1Q9UGI0 708 aa15.58■□□□□ 0.08
CD9-207ENST00000538418 GRXCR2A6NFK2 248 aa15.55■□□□□ 0.08
CD9-207ENST00000538418 PDIA4P13667 645 aaKnown RBP15.55■□□□□ 0.08
CD9-207ENST00000538418 PHF12Q96QT6 1004 aa15.55■□□□□ 0.08
CD9-207ENST00000538418 A6NJR5 290 aa15.54■□□□□ 0.08
CD9-207ENST00000538418 GNPATO15228 680 aa15.54■□□□□ 0.08
CD9-207ENST00000538418 FOXK1P85037 733 aa15.54■□□□□ 0.08
CD9-207ENST00000538418 ILDR1Q86SU0 546 aaPredicted RBP15.54■□□□□ 0.08
CD9-207ENST00000538418 TMC2Q8TDI7 906 aa15.5■□□□□ 0.07
CD9-207ENST00000538418 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.5■□□□□ 0.07
CD9-207ENST00000538418 ZBTB7CA1YPR0 619 aa15.49■□□□□ 0.07
CD9-207ENST00000538418 TRAK2O60296 914 aa15.49■□□□□ 0.07
CD9-207ENST00000538418 HIC1Q14526 733 aa15.49■□□□□ 0.07
CD9-207ENST00000538418 TRPC6Q9Y210 931 aa15.49■□□□□ 0.07
CD9-207ENST00000538418 TTLL12Q14166 644 aaPredicted RBP15.48■□□□□ 0.07
CD9-207ENST00000538418 CCDC82Q8N4S0 544 aa15.48■□□□□ 0.07
CD9-207ENST00000538418 CLUAP1Q96AJ1 413 aa15.48■□□□□ 0.07
CD9-207ENST00000538418 FCHSD2O94868 740 aa15.46■□□□□ 0.07
CD9-207ENST00000538418 OSBPP22059 807 aa15.46■□□□□ 0.07
CD9-207ENST00000538418 PCMTD1Q96MG8 357 aaPredicted RBP15.46■□□□□ 0.07
CD9-207ENST00000538418 FECHP22830 423 aa15.45■□□□□ 0.06
CD9-207ENST00000538418 CD44P16070 742 aaKnown RBP15.44■□□□□ 0.06
CD9-207ENST00000538418 MAP3K9P80192 1104 aa15.44■□□□□ 0.06
CD9-207ENST00000538418 PLPP6Q8IY26 295 aa15.44■□□□□ 0.06
CD9-207ENST00000538418 MICALL2Q8IY33 904 aa15.41■□□□□ 0.06
CD9-207ENST00000538418 MS4A3Q96HJ5 214 aa15.41■□□□□ 0.06
CD9-207ENST00000538418 GIGYF2Q6Y7W6 1299 aaKnown RBP15.4■□□□□ 0.06
CD9-207ENST00000538418 CCDC9Q9Y3X0 531 aaKnown RBP15.4■□□□□ 0.06
CD9-207ENST00000538418 MS4A1P11836 297 aa15.39■□□□□ 0.05
CD9-207ENST00000538418 TIE1P35590 1138 aa15.37■□□□□ 0.05
CD9-207ENST00000538418 DPY19L2Q6NUT2 758 aa15.37■□□□□ 0.05
CD9-207ENST00000538418 MCM6Q14566 821 aa15.36■□□□□ 0.05
CD9-207ENST00000538418 TTLL13PA6NNM8 815 aa15.35■□□□□ 0.05
CD9-207ENST00000538418 PTGER2P43116 358 aa15.35■□□□□ 0.05
CD9-207ENST00000538418 PIP4P2Q8N4L2 257 aa15.35■□□□□ 0.05
CD9-207ENST00000538418 NECTIN2Q92692 538 aa15.35■□□□□ 0.05
CD9-207ENST00000538418 SH3D19Q5HYK7 790 aa15.33■□□□□ 0.04
CD9-207ENST00000538418 C2orf72A6NCS6 295 aa15.32■□□□□ 0.04
CD9-207ENST00000538418 PTGDRQ13258 359 aa15.31■□□□□ 0.04
CD9-207ENST00000538418 DDX12PQ92771 950 aa15.31■□□□□ 0.04
CD9-207ENST00000538418 REPIN1Q9BWE0 567 aaKnown RBP15.31■□□□□ 0.04
CD9-207ENST00000538418 KIF3CO14782 793 aa15.3■□□□□ 0.04
CD9-207ENST00000538418 PROSER2Q86WR7 435 aaPredicted RBP15.28■□□□□ 0.04
CD9-207ENST00000538418 ZNF777Q9ULD5 760 aaPredicted RBP15.28■□□□□ 0.04
CD9-207ENST00000538418 UPF1Q92900 1129 aaKnown RBP eCLIP15.27■□□□□ 0.04
CD9-207ENST00000538418 TRIM35Q9UPQ4 493 aa15.26■□□□□ 0.03
CD9-207ENST00000538418 PRIM1P49642 420 aaKnown RBP15.25■□□□□ 0.03
CD9-207ENST00000538418 OXER1Q8TDS5 423 aa15.25■□□□□ 0.03
CD9-207ENST00000538418 SKIV2LQ15477 1246 aaKnown RBP15.24■□□□□ 0.03
CD9-207ENST00000538418 TMEM121BQ9BXQ6 578 aaPredicted RBP15.24■□□□□ 0.03
CD9-207ENST00000538418 BMP2KQ9NSY1 1161 aaPredicted RBP15.24■□□□□ 0.03
CD9-207ENST00000538418 FNBP4Q8N3X1 1017 aaPredicted RBP15.23■□□□□ 0.03
CD9-207ENST00000538418 TMUB1Q9BVT8 246 aa15.23■□□□□ 0.03
CD9-207ENST00000538418 SERPINA10Q9UK55 444 aa15.23■□□□□ 0.03
CD9-207ENST00000538418 CLCN1P35523 988 aa15.22■□□□□ 0.03
CD9-207ENST00000538418 TRAIPQ9BWF2 469 aa15.22■□□□□ 0.03
CD9-207ENST00000538418 TBC1D12O60347 775 aa15.21■□□□□ 0.03
CD9-207ENST00000538418 CHRDL2Q6WN34 429 aa15.21■□□□□ 0.03
CD9-207ENST00000538418 PDCD7Q8N8D1 485 aaKnown RBP15.21■□□□□ 0.03
CD9-207ENST00000538418 CCDC97Q96F63 343 aaPredicted RBP15.21■□□□□ 0.03
CD9-207ENST00000538418 RAD21O60216 631 aa15.2■□□□□ 0.02
CD9-207ENST00000538418 POM121Q96HA1 1249 aa15.19■□□□□ 0.02
CD9-207ENST00000538418 GPCPD1Q9NPB8 672 aa15.19■□□□□ 0.02
CD9-207ENST00000538418 BOLA1Q9Y3E2 137 aa15.19■□□□□ 0.02
CD9-207ENST00000538418 KCTD17Q8N5Z5 321 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms