RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 MYO5CQ9NQX4 1742 aa14.37□□□□□ -0.11
CIITA-203ENST00000537380 PCGF6Q9BYE7 350 aa14.36□□□□□ -0.11
CIITA-203ENST00000537380 NCOA2Q15596 1464 aa14.36□□□□□ -0.11
CIITA-203ENST00000537380 CCNB3Q8WWL7 1395 aa14.34□□□□□ -0.11
CIITA-203ENST00000537380 PLCH2O75038 1416 aa14.33□□□□□ -0.11
CIITA-203ENST00000537380 MYOM3Q5VTT5 1437 aa14.33□□□□□ -0.11
CIITA-203ENST00000537380 MIA2Q96PC5 1412 aa14.33□□□□□ -0.11
CIITA-203ENST00000537380 FANCAO15360 1455 aa14.33□□□□□ -0.12
CIITA-203ENST00000537380 FRMPD1Q5SYB0 1578 aa14.32□□□□□ -0.12
CIITA-203ENST00000537380 PREX2Q70Z35 1606 aa14.31□□□□□ -0.12
CIITA-203ENST00000537380 FGD6Q6ZV73 1430 aa14.31□□□□□ -0.12
CIITA-203ENST00000537380 RICTORQ6R327 1708 aa14.3□□□□□ -0.12
CIITA-203ENST00000537380 CDC42BPBQ9Y5S2 1711 aa14.3□□□□□ -0.12
CIITA-203ENST00000537380 AKNAQ7Z591 1439 aa14.3□□□□□ -0.12
CIITA-203ENST00000537380 CDC42BPAQ5VT25 1732 aa14.29□□□□□ -0.12
CIITA-203ENST00000537380 TCOF1Q13428 1488 aaKnown RBP14.28□□□□□ -0.12
CIITA-203ENST00000537380 DENND4BO75064 1496 aaPredicted RBP14.26□□□□□ -0.13
CIITA-203ENST00000537380 ITSN2Q9NZM3 1697 aa14.26□□□□□ -0.13
CIITA-203ENST00000537380 ARHGAP5Q13017 1502 aa14.25□□□□□ -0.13
CIITA-203ENST00000537380 ZMYM4Q5VZL5 1548 aa14.25□□□□□ -0.13
CIITA-203ENST00000537380 ADGRL1O94910 1474 aa14.25□□□□□ -0.13
CIITA-203ENST00000537380 GPATCH8Q9UKJ3 1502 aaKnown RBP14.24□□□□□ -0.13
CIITA-203ENST00000537380 POGZQ7Z3K3 1410 aa14.23□□□□□ -0.13
CIITA-203ENST00000537380 ABCC1P33527 1531 aa14.22□□□□□ -0.13
CIITA-203ENST00000537380 EFCAB2Q5VUJ9 269 aa14.22□□□□□ -0.13
CIITA-203ENST00000537380 PTPN23Q9H3S7 1636 aa14.22□□□□□ -0.13
CIITA-203ENST00000537380 ARHGEF40Q8TER5 1519 aa14.21□□□□□ -0.13
CIITA-203ENST00000537380 KDM4FA0A1W2PPD8 638 aa14.21□□□□□ -0.13
CIITA-203ENST00000537380 RAPGEF3O95398 923 aa14.21□□□□□ -0.13
CIITA-203ENST00000537380 SCAPERQ9BY12 1400 aa14.21□□□□□ -0.13
CIITA-203ENST00000537380 KDM5CP41229 1560 aa14.21□□□□□ -0.14
CIITA-203ENST00000537380 MAGI2Q86UL8 1455 aa14.19□□□□□ -0.14
CIITA-203ENST00000537380 SAMD9LQ8IVG5 1584 aa14.19□□□□□ -0.14
CIITA-203ENST00000537380 ZNF518AQ6AHZ1 1483 aa14.18□□□□□ -0.14
CIITA-203ENST00000537380 ARHGEF12Q9NZN5 1544 aa14.17□□□□□ -0.14
CIITA-203ENST00000537380 CFDP1Q9UEE9 299 aaPredicted RBP14.17□□□□□ -0.14
CIITA-203ENST00000537380 HRCP23327 699 aa14.16□□□□□ -0.14
CIITA-203ENST00000537380 ZFYVE16Q7Z3T8 1539 aa14.15□□□□□ -0.14
CIITA-203ENST00000537380 FAM50AQ14320 339 aaKnown RBP14.15□□□□□ -0.14
CIITA-203ENST00000537380 RSPH4AQ5TD94 716 aa14.15□□□□□ -0.14
CIITA-203ENST00000537380 HECW2Q9P2P5 1572 aa14.14□□□□□ -0.15
CIITA-203ENST00000537380 PLEKHH2Q8IVE3 1493 aa14.14□□□□□ -0.15
CIITA-203ENST00000537380 SYCP2Q9BX26 1530 aa14.14□□□□□ -0.15
CIITA-203ENST00000537380 KIAA1107Q9UPP5 1409 aa14.14□□□□□ -0.15
CIITA-203ENST00000537380 ACIN1Q9UKV3 1341 aaKnown RBP14.14□□□□□ -0.15
CIITA-203ENST00000537380 YEATS2Q9ULM3 1422 aa14.13□□□□□ -0.15
CIITA-203ENST00000537380 TRAPPC8Q9Y2L5 1435 aa14.13□□□□□ -0.15
CIITA-203ENST00000537380 CAMSAP2Q08AD1 1489 aa14.12□□□□□ -0.15
CIITA-203ENST00000537380 DNMT1P26358 1616 aaKnown RBP14.12□□□□□ -0.15
CIITA-203ENST00000537380 SIGLEC1Q9BZZ2 1709 aa14.12□□□□□ -0.15
CIITA-203ENST00000537380 MLH3Q9UHC1 1453 aa14.12□□□□□ -0.15
CIITA-203ENST00000537380 ROCK1Q13464 1354 aa14.11□□□□□ -0.15
CIITA-203ENST00000537380 ARHGEF5Q12774 1597 aa14.11□□□□□ -0.15
CIITA-203ENST00000537380 DIP2CQ9Y2E4 1556 aa14.1□□□□□ -0.15
CIITA-203ENST00000537380 KIDINS220Q9ULH0 1771 aa14.1□□□□□ -0.15
CIITA-203ENST00000537380 BCORL1Q5H9F3 1711 aa14.1□□□□□ -0.15
CIITA-203ENST00000537380 REREQ9P2R6 1566 aa14.09□□□□□ -0.15
CIITA-203ENST00000537380 ABCA6Q8N139 1617 aa14.09□□□□□ -0.15
CIITA-203ENST00000537380 AFAP1Q8N556 730 aa14.09□□□□□ -0.15
CIITA-203ENST00000537380 SHANK2Q9UPX8 1470 aa14.09□□□□□ -0.15
CIITA-203ENST00000537380 ADAMTSL3P82987 1691 aa14.09□□□□□ -0.15
CIITA-203ENST00000537380 INO80Q9ULG1 1556 aaPredicted RBP14.09□□□□□ -0.15
CIITA-203ENST00000537380 HFM1A2PYH4 1435 aa14.08□□□□□ -0.15
CIITA-203ENST00000537380 ABCC5O15440 1437 aa14.08□□□□□ -0.15
CIITA-203ENST00000537380 DAPK1P53355 1430 aa14.08□□□□□ -0.15
CIITA-203ENST00000537380 MBD5Q9P267 1494 aa14.08□□□□□ -0.16
CIITA-203ENST00000537380 ARID4BQ4LE39 1312 aaPredicted RBP14.08□□□□□ -0.16
CIITA-203ENST00000537380 SETD5Q9C0A6 1442 aa14.07□□□□□ -0.16
CIITA-203ENST00000537380 ATP10AO60312 1499 aa14.07□□□□□ -0.16
CIITA-203ENST00000537380 PTPRKQ15262 1439 aa14.07□□□□□ -0.16
CIITA-203ENST00000537380 C9orf84Q5VXU9 1444 aa14.07□□□□□ -0.16
CIITA-203ENST00000537380 ADGRL2O95490 1459 aa14.06□□□□□ -0.16
CIITA-203ENST00000537380 ZNF777Q9ULD5 760 aaPredicted RBP14.06□□□□□ -0.16
CIITA-203ENST00000537380 ZNF644Q9H582 1327 aaPredicted RBP14.06□□□□□ -0.16
CIITA-203ENST00000537380 ATP7AQ04656 1500 aa14.05□□□□□ -0.16
CIITA-203ENST00000537380 CROCC2H7BZ55 1655 aa14.04□□□□□ -0.16
CIITA-203ENST00000537380 HNRNPMP52272 730 aaKnown RBP eCLIP14.03□□□□□ -0.16
CIITA-203ENST00000537380 CCDC141Q6ZP82 1450 aa14.03□□□□□ -0.16
CIITA-203ENST00000537380 MADDQ8WXG6 1647 aa14.02□□□□□ -0.16
CIITA-203ENST00000537380 MAST1Q9Y2H9 1570 aa14.02□□□□□ -0.16
CIITA-203ENST00000537380 AGLP35573 1532 aa14.02□□□□□ -0.16
CIITA-203ENST00000537380 NAIPQ13075 1403 aa14.02□□□□□ -0.16
CIITA-203ENST00000537380 CLSPNQ9HAW4 1339 aa14.02□□□□□ -0.17
CIITA-203ENST00000537380 PLXNC1O60486 1568 aa14.01□□□□□ -0.17
CIITA-203ENST00000537380 ITGAEP38570 1179 aa14.01□□□□□ -0.17
CIITA-203ENST00000537380 GCC2Q8IWJ2 1684 aa14.01□□□□□ -0.17
CIITA-203ENST00000537380 ADGBQ8N7X0 1667 aa14.01□□□□□ -0.17
CIITA-203ENST00000537380 RTEL1-TNFRSF6BF6WH68 1400 aa14□□□□□ -0.17
CIITA-203ENST00000537380 NCOA1Q15788 1441 aa14□□□□□ -0.17
CIITA-203ENST00000537380 ANKRD30AQ9BXX3 1397 aa14□□□□□ -0.17
CIITA-203ENST00000537380 RAB3GAP2Q9H2M9 1393 aa14□□□□□ -0.17
CIITA-203ENST00000537380 SPAG9O60271 1321 aaKnown RBP14□□□□□ -0.17
CIITA-203ENST00000537380 TSPY4P0CV99 314 aa14□□□□□ -0.17
CIITA-203ENST00000537380 TSPY10P0CW01 314 aa14□□□□□ -0.17
CIITA-203ENST00000537380 MYT1LQ9UL68 1186 aa13.98□□□□□ -0.17
CIITA-203ENST00000537380 FER1L4A9Z1Z3 1794 aa13.98□□□□□ -0.17
CIITA-203ENST00000537380 ZEB1P37275 1124 aaPredicted RBP13.97□□□□□ -0.17
CIITA-203ENST00000537380 RIMS1Q86UR5 1692 aaKnown RBP13.97□□□□□ -0.17
CIITA-203ENST00000537380 PTPRMP28827 1452 aa13.96□□□□□ -0.17
CIITA-203ENST00000537380 A2MP01023 1474 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms