RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	PDCD7	Q8N8D1	485 aa	Known RBP	11.43	□□□□□ -0.58
PRKDC-208	ENST00000536710	OCEL1	Q9H607	264 aa		11.43	□□□□□ -0.58
PRKDC-208	ENST00000536710	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.43	□□□□□ -0.58
PRKDC-208	ENST00000536710	ASTL	Q6HA08	431 aa	Predicted RBP	11.42	□□□□□ -0.58
PRKDC-208	ENST00000536710	PLCG2	P16885	1265 aa		11.41	□□□□□ -0.58
PRKDC-208	ENST00000536710	IRX5	P78411	483 aa	Predicted RBP	11.41	□□□□□ -0.58
PRKDC-208	ENST00000536710	IER5L	Q5T953	404 aa		11.41	□□□□□ -0.58
PRKDC-208	ENST00000536710	ZC3H15	Q8WU90	426 aa	Known RBP	11.41	□□□□□ -0.58
PRKDC-208	ENST00000536710	BOLA1	Q9Y3E2	137 aa		11.41	□□□□□ -0.58
PRKDC-208	ENST00000536710	DSG2	Q14126	1118 aa		11.4	□□□□□ -0.58
PRKDC-208	ENST00000536710	DPYSL4	O14531	572 aa		11.37	□□□□□ -0.59
PRKDC-208	ENST00000536710	DCBLD2	Q96PD2	775 aa		11.36	□□□□□ -0.59
PRKDC-208	ENST00000536710	GABBR2	O75899	941 aa		11.35	□□□□□ -0.59
PRKDC-208	ENST00000536710	SEC24B	O95487	1268 aa		11.35	□□□□□ -0.59
PRKDC-208	ENST00000536710	FOXK1	P85037	733 aa		11.35	□□□□□ -0.59
PRKDC-208	ENST00000536710	EMILIN3	Q9NT22	766 aa		11.35	□□□□□ -0.59
PRKDC-208	ENST00000536710	C2orf72	A6NCS6	295 aa		11.33	□□□□□ -0.6
PRKDC-208	ENST00000536710	MLLT3	P42568	568 aa	Predicted RBP	11.33	□□□□□ -0.6
PRKDC-208	ENST00000536710	PLPP6	Q8IY26	295 aa		11.33	□□□□□ -0.6
PRKDC-208	ENST00000536710	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.33	□□□□□ -0.6
PRKDC-208	ENST00000536710	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.33	□□□□□ -0.6
PRKDC-208	ENST00000536710	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.3	□□□□□ -0.6
PRKDC-208	ENST00000536710	RBM26	Q5T8P6	1007 aa	Known RBP	11.3	□□□□□ -0.6
PRKDC-208	ENST00000536710	SLC24A3	Q9HC58	644 aa		11.3	□□□□□ -0.6
PRKDC-208	ENST00000536710	PDIA6	Q15084	440 aa		11.28	□□□□□ -0.6
PRKDC-208	ENST00000536710	GPIHBP1	Q8IV16	184 aa		11.27	□□□□□ -0.61
PRKDC-208	ENST00000536710	PELP1	Q8IZL8	1130 aa	Known RBP	11.27	□□□□□ -0.61
PRKDC-208	ENST00000536710	KIF3C	O14782	793 aa		11.26	□□□□□ -0.61
PRKDC-208	ENST00000536710	ZMYND10	O75800	440 aa		11.26	□□□□□ -0.61
PRKDC-208	ENST00000536710	MAP3K9	P80192	1104 aa		11.26	□□□□□ -0.61
PRKDC-208	ENST00000536710	COLQ	Q9Y215	455 aa	Predicted RBP	11.26	□□□□□ -0.61
PRKDC-208	ENST00000536710	TMEM132A	Q24JP5	1023 aa		11.25	□□□□□ -0.61
PRKDC-208	ENST00000536710	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.25	□□□□□ -0.61
PRKDC-208	ENST00000536710	NEUROD2	Q15784	382 aa		11.24	□□□□□ -0.61
PRKDC-208	ENST00000536710	SLC39A7	Q92504	469 aa		11.24	□□□□□ -0.61
PRKDC-208	ENST00000536710	BRPF1	P55201	1214 aa	Predicted RBP	11.22	□□□□□ -0.61
PRKDC-208	ENST00000536710	GRXCR2	A6NFK2	248 aa		11.21	□□□□□ -0.61
PRKDC-208	ENST00000536710	TMEM92	Q6UXU6	159 aa		11.21	□□□□□ -0.61
PRKDC-208	ENST00000536710	KRI1	Q8N9T8	703 aa	Known RBP	11.21	□□□□□ -0.61
PRKDC-208	ENST00000536710	C7	P10643	843 aa		11.2	□□□□□ -0.62
PRKDC-208	ENST00000536710	BARGIN	Q6ZT62	677 aa		11.2	□□□□□ -0.62
PRKDC-208	ENST00000536710	POTEH	Q6S545	545 aa		11.19	□□□□□ -0.62
PRKDC-208	ENST00000536710	GTF3C3	Q9Y5Q9	886 aa		11.19	□□□□□ -0.62
PRKDC-208	ENST00000536710	C3orf67	Q6ZVT6	689 aa		11.18	□□□□□ -0.62
PRKDC-208	ENST00000536710	METRN	Q9UJH8	293 aa		11.18	□□□□□ -0.62
PRKDC-208	ENST00000536710	TBC1D12	O60347	775 aa		11.15	□□□□□ -0.62
PRKDC-208	ENST00000536710	POTEF	A5A3E0	1075 aa		11.14	□□□□□ -0.63
PRKDC-208	ENST00000536710	OXER1	Q8TDS5	423 aa		11.14	□□□□□ -0.63
PRKDC-208	ENST00000536710	AK7	Q96M32	723 aa		11.14	□□□□□ -0.63
PRKDC-208	ENST00000536710	NUTM2F	A1L443	756 aa		11.13	□□□□□ -0.63
PRKDC-208	ENST00000536710	DDX12P	Q92771	950 aa		11.12	□□□□□ -0.63
PRKDC-208	ENST00000536710	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.11	□□□□□ -0.63
PRKDC-208	ENST00000536710	EVI5	O60447	810 aa		11.09	□□□□□ -0.63
PRKDC-208	ENST00000536710	POTEI	P0CG38	1075 aa		11.08	□□□□□ -0.64
PRKDC-208	ENST00000536710	OSBP	P22059	807 aa		11.07	□□□□□ -0.64
PRKDC-208	ENST00000536710	PTGER2	P43116	358 aa		11.05	□□□□□ -0.64
PRKDC-208	ENST00000536710	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.05	□□□□□ -0.64
PRKDC-208	ENST00000536710	GPR37	O15354	613 aa		11.04	□□□□□ -0.64
PRKDC-208	ENST00000536710	SP7	Q8TDD2	431 aa	Predicted RBP	11.04	□□□□□ -0.64
PRKDC-208	ENST00000536710	PTCD2	Q8WV60	388 aa	Known RBP	11.04	□□□□□ -0.64
PRKDC-208	ENST00000536710	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.04	□□□□□ -0.64
PRKDC-208	ENST00000536710	TIMELESS	Q9UNS1	1208 aa		11.04	□□□□□ -0.64
PRKDC-208	ENST00000536710	TRIM66	O15016	1216 aa		11.02	□□□□□ -0.65
PRKDC-208	ENST00000536710	FCHSD2	O94868	740 aa		11.01	□□□□□ -0.65
PRKDC-208	ENST00000536710	GNPAT	O15228	680 aa		11	□□□□□ -0.65
PRKDC-208	ENST00000536710	PDE4D	Q08499	809 aa		11	□□□□□ -0.65
PRKDC-208	ENST00000536710	SLC34A2	O95436	690 aa		10.99	□□□□□ -0.65
PRKDC-208	ENST00000536710	MAP2K5	Q13163	448 aa		10.99	□□□□□ -0.65
PRKDC-208	ENST00000536710	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.99	□□□□□ -0.65
PRKDC-208	ENST00000536710	HIC1	Q14526	733 aa		10.98	□□□□□ -0.65
PRKDC-208	ENST00000536710	KDM4C	Q9H3R0	1056 aa		10.98	□□□□□ -0.65
PRKDC-208	ENST00000536710	PRIM1	P49642	420 aa	Known RBP	10.97	□□□□□ -0.65
PRKDC-208	ENST00000536710	ERICH6	Q7L0X2	663 aa		10.97	□□□□□ -0.65
PRKDC-208	ENST00000536710	CCDC102A	Q96A19	550 aa		10.97	□□□□□ -0.65
PRKDC-208	ENST00000536710	IL27	Q8NEV9	243 aa		10.96	□□□□□ -0.65
PRKDC-208	ENST00000536710	IRF6	O14896	467 aa		10.95	□□□□□ -0.66
PRKDC-208	ENST00000536710	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.95	□□□□□ -0.66
PRKDC-208	ENST00000536710	PCDHGA4	Q9Y5G9	962 aa		10.95	□□□□□ -0.66
PRKDC-208	ENST00000536710	MAP3K7	O43318	606 aa		10.94	□□□□□ -0.66
PRKDC-208	ENST00000536710	FECH	P22830	423 aa		10.94	□□□□□ -0.66
PRKDC-208	ENST00000536710	C14orf37	Q86TY3	774 aa		10.94	□□□□□ -0.66
PRKDC-208	ENST00000536710	DAXX	Q9UER7	740 aa	Predicted RBP	10.94	□□□□□ -0.66
PRKDC-208	ENST00000536710	PTGDR	Q13258	359 aa		10.93	□□□□□ -0.66
PRKDC-208	ENST00000536710	RBM33	Q96EV2	1170 aa	Known RBP	10.93	□□□□□ -0.66
PRKDC-208	ENST00000536710	EPAS1	Q99814	870 aa		10.93	□□□□□ -0.66
PRKDC-208	ENST00000536710	PHF14	O94880	888 aa		10.92	□□□□□ -0.66
PRKDC-208	ENST00000536710	EN1	Q05925	392 aa	Predicted RBP	10.91	□□□□□ -0.66
PRKDC-208	ENST00000536710	CDHR5	Q9HBB8	845 aa		10.9	□□□□□ -0.66
PRKDC-208	ENST00000536710	PCDHGA10	Q9Y5H3	936 aa		10.89	□□□□□ -0.67
PRKDC-208	ENST00000536710	TYW1B	Q6NUM6	668 aa		10.88	□□□□□ -0.67
PRKDC-208	ENST00000536710	SLAIN1	Q8ND83	568 aa		10.88	□□□□□ -0.67
PRKDC-208	ENST00000536710	TTLL12	Q14166	644 aa	Predicted RBP	10.87	□□□□□ -0.67
PRKDC-208	ENST00000536710	AMHR2	Q16671	573 aa		10.86	□□□□□ -0.67
PRKDC-208	ENST00000536710	TSR1	Q2NL82	804 aa	Known RBP	10.85	□□□□□ -0.67
PRKDC-208	ENST00000536710	PARP9	Q8IXQ6	854 aa		10.85	□□□□□ -0.67
PRKDC-208	ENST00000536710	DOK7	Q18PE1	504 aa		10.84	□□□□□ -0.67
PRKDC-208	ENST00000536710	FBXW7	Q969H0	707 aa		10.84	□□□□□ -0.67
PRKDC-208	ENST00000536710	JPH4	Q96JJ6	628 aa		10.84	□□□□□ -0.67
PRKDC-208	ENST00000536710	FAM117A	Q9C073	453 aa		10.84	□□□□□ -0.67
PRKDC-208	ENST00000536710	NPDC1	Q9NQX5	325 aa	Predicted RBP	10.83	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms