RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TMC2Q8TDI7 906 aa7.42□□□□□ -1.22
CD44-238ENST00000534296 PPP1R37O75864 691 aa7.41□□□□□ -1.22
CD44-238ENST00000534296 POTEGQ6S5H5 508 aa7.4□□□□□ -1.22
CD44-238ENST00000534296 RIMBP2O15034 1052 aa7.35□□□□□ -1.23
CD44-238ENST00000534296 PDE4AP27815 886 aa7.35□□□□□ -1.23
CD44-238ENST00000534296 PLCB2Q00722 1185 aa7.34□□□□□ -1.23
CD44-238ENST00000534296 DOK7Q18PE1 504 aa7.34□□□□□ -1.23
CD44-238ENST00000534296 FAM163AQ96GL9 167 aaPredicted RBP7.34□□□□□ -1.23
CD44-238ENST00000534296 C2orf72A6NCS6 295 aa7.33□□□□□ -1.24
CD44-238ENST00000534296 GPHNQ9NQX3 736 aaPredicted RBP7.33□□□□□ -1.24
CD44-238ENST00000534296 ZNF710Q8N1W2 664 aa7.32□□□□□ -1.24
CD44-238ENST00000534296 KIF3CO14782 793 aa7.3□□□□□ -1.24
CD44-238ENST00000534296 TMEM92Q6UXU6 159 aa7.3□□□□□ -1.24
CD44-238ENST00000534296 DDX27Q96GQ7 796 aaKnown RBP7.3□□□□□ -1.24
CD44-238ENST00000534296 FOXK1P85037 733 aa7.29□□□□□ -1.24
CD44-238ENST00000534296 LARP6Q9BRS8 491 aaKnown RBP7.29□□□□□ -1.24
CD44-238ENST00000534296 CRISPLD2Q9H0B8 497 aa7.29□□□□□ -1.24
CD44-238ENST00000534296 WDR70Q9NW82 654 aa7.29□□□□□ -1.24
CD44-238ENST00000534296 PCDH10Q9P2E7 1040 aa7.29□□□□□ -1.24
CD44-238ENST00000534296 PPP1R15BQ5SWA1 713 aa7.28□□□□□ -1.24
CD44-238ENST00000534296 LCE2DQ5TA82 110 aaPredicted RBP7.27□□□□□ -1.25
CD44-238ENST00000534296 PLPP6Q8IY26 295 aa7.27□□□□□ -1.25
CD44-238ENST00000534296 ZSWIM6Q9HCJ5 1215 aa7.27□□□□□ -1.25
CD44-238ENST00000534296 HAP1P54257 671 aaPredicted RBP7.26□□□□□ -1.25
CD44-238ENST00000534296 NCKAP5LQ9HCH0 1330 aa7.26□□□□□ -1.25
CD44-238ENST00000534296 ZNF316A6NFI3 1004 aaPredicted RBP7.25□□□□□ -1.25
CD44-238ENST00000534296 TBC1D12O60347 775 aa7.25□□□□□ -1.25
CD44-238ENST00000534296 DSG2Q14126 1118 aa7.25□□□□□ -1.25
CD44-238ENST00000534296 MFSD10Q14728 455 aa7.24□□□□□ -1.25
CD44-238ENST00000534296 CADPS2Q86UW7 1296 aa7.24□□□□□ -1.25
CD44-238ENST00000534296 SLC34A2O95436 690 aa7.23□□□□□ -1.25
CD44-238ENST00000534296 HOXB3P14651 431 aaPredicted RBP7.22□□□□□ -1.25
CD44-238ENST00000534296 TSHZ2Q9NRE2 1034 aa7.22□□□□□ -1.25
CD44-238ENST00000534296 ST18O60284 1047 aa7.21□□□□□ -1.26
CD44-238ENST00000534296 EMP3P54852 163 aa7.2□□□□□ -1.26
CD44-238ENST00000534296 HOXB1P14653 301 aaPredicted RBP7.19□□□□□ -1.26
CD44-238ENST00000534296 PTCD2Q8WV60 388 aaKnown RBP7.19□□□□□ -1.26
CD44-238ENST00000534296 PCDHGA4Q9Y5G9 962 aa7.18□□□□□ -1.26
CD44-238ENST00000534296 MAP3K9P80192 1104 aa7.17□□□□□ -1.26
CD44-238ENST00000534296 E2F4Q16254 413 aa7.17□□□□□ -1.26
CD44-238ENST00000534296 P3H3Q8IVL6 736 aa7.17□□□□□ -1.26
CD44-238ENST00000534296 UPF1Q92900 1129 aaKnown RBP eCLIP7.17□□□□□ -1.26
CD44-238ENST00000534296 ARSIQ5FYB1 569 aa7.16□□□□□ -1.26
CD44-238ENST00000534296 PSDA5PKW4 1024 aaPredicted RBP7.15□□□□□ -1.26
CD44-238ENST00000534296 GPR153Q6NV75 609 aa7.15□□□□□ -1.26
CD44-238ENST00000534296 CDAN1Q8IWY9 1227 aa7.15□□□□□ -1.26
CD44-238ENST00000534296 OXER1Q8TDS5 423 aa7.15□□□□□ -1.26
CD44-238ENST00000534296 ERBB3P21860 1342 aa7.15□□□□□ -1.26
CD44-238ENST00000534296 CAMK2BQ13554 666 aa7.14□□□□□ -1.27
CD44-238ENST00000534296 VSIG10Q8N0Z9 540 aa7.14□□□□□ -1.27
CD44-238ENST00000534296 MARVELD3Q96A59 401 aa7.14□□□□□ -1.27
CD44-238ENST00000534296 NUDT7P0C024 238 aa7.13□□□□□ -1.27
CD44-238ENST00000534296 FAM205CA6NFA0 338 aa7.11□□□□□ -1.27
CD44-238ENST00000534296 EVI5O60447 810 aa7.1□□□□□ -1.27
CD44-238ENST00000534296 EMILIN3Q9NT22 766 aa7.1□□□□□ -1.27
CD44-238ENST00000534296 SPDYE16A6NNV3 312 aaPredicted RBP7.09□□□□□ -1.27
CD44-238ENST00000534296 DPYSL4O14531 572 aa7.09□□□□□ -1.27
CD44-238ENST00000534296 VARS2Q5ST30 1063 aaKnown RBP7.09□□□□□ -1.27
CD44-238ENST00000534296 KHSRPQ92945 711 aaKnown RBP eCLIP7.09□□□□□ -1.27
CD44-238ENST00000534296 KCNH8Q96L42 1107 aa7.09□□□□□ -1.27
CD44-238ENST00000534296 PPP4R3BQ5MIZ7 849 aa7.08□□□□□ -1.28
CD44-238ENST00000534296 ARHGEF1Q92888 912 aaKnown RBP7.08□□□□□ -1.28
CD44-238ENST00000534296 HS3ST6Q96QI5 342 aa7.08□□□□□ -1.28
CD44-238ENST00000534296 ARIH1Q9Y4X5 557 aaPredicted RBP7.08□□□□□ -1.28
CD44-238ENST00000534296 LHX6Q9UPM6 363 aa7.07□□□□□ -1.28
CD44-238ENST00000534296 PDIA6Q15084 440 aa7.06□□□□□ -1.28
CD44-238ENST00000534296 KCNV2Q8TDN2 545 aa7.05□□□□□ -1.28
CD44-238ENST00000534296 JPH4Q96JJ6 628 aa7.05□□□□□ -1.28
CD44-238ENST00000534296 ZNF454Q8N9F8 522 aa7.04□□□□□ -1.28
CD44-238ENST00000534296 ANO8Q9HCE9 1232 aaPredicted RBP7.04□□□□□ -1.28
CD44-238ENST00000534296 PBX2P40425 430 aa7.03□□□□□ -1.28
CD44-238ENST00000534296 ZNF687Q8N1G0 1237 aa7.03□□□□□ -1.28
CD44-238ENST00000534296 KDM4FA0A1W2PPD8 638 aa7.02□□□□□ -1.29
CD44-238ENST00000534296 FBXW7Q969H0 707 aa7.02□□□□□ -1.29
CD44-238ENST00000534296 EPAS1Q99814 870 aa7.02□□□□□ -1.29
CD44-238ENST00000534296 SLC24A1O60721 1099 aa7.01□□□□□ -1.29
CD44-238ENST00000534296 PHF14O94880 888 aa7.01□□□□□ -1.29
CD44-238ENST00000534296 TYW1BQ6NUM6 668 aa7.01□□□□□ -1.29
CD44-238ENST00000534296 KDM2AQ9Y2K7 1162 aa7.01□□□□□ -1.29
CD44-238ENST00000534296 FOSBP53539 338 aa7□□□□□ -1.29
CD44-238ENST00000534296 ZDHHC16Q969W1 377 aa7□□□□□ -1.29
CD44-238ENST00000534296 TULP1O00294 542 aaPredicted RBP6.99□□□□□ -1.29
CD44-238ENST00000534296 PTGER2P43116 358 aa6.99□□□□□ -1.29
CD44-238ENST00000534296 DDX12PQ92771 950 aa6.99□□□□□ -1.29
CD44-238ENST00000534296 PTPREP23469 700 aa6.98□□□□□ -1.29
CD44-238ENST00000534296 NBR1Q14596 966 aa6.98□□□□□ -1.29
CD44-238ENST00000534296 SMYD5Q6GMV2 418 aa6.98□□□□□ -1.29
CD44-238ENST00000534296 GRXCR2A6NFK2 248 aa6.97□□□□□ -1.29
CD44-238ENST00000534296 ARHGAP33O14559 1287 aa6.97□□□□□ -1.29
CD44-238ENST00000534296 SPNS2Q8IVW8 549 aa6.97□□□□□ -1.29
CD44-238ENST00000534296 BCL2L12Q9HB09 334 aa6.97□□□□□ -1.29
CD44-238ENST00000534296 MMRN1Q13201 1228 aa6.96□□□□□ -1.3
CD44-238ENST00000534296 KCNK17Q96T54 332 aa6.96□□□□□ -1.3
CD44-238ENST00000534296 PCDHGA10Q9Y5H3 936 aa6.96□□□□□ -1.3
CD44-238ENST00000534296 POTEB3A0JP26 581 aa6.95□□□□□ -1.3
CD44-238ENST00000534296 MAP3K7O43318 606 aa6.95□□□□□ -1.3
CD44-238ENST00000534296 POTEBQ6S5H4 581 aa6.95□□□□□ -1.3
CD44-238ENST00000534296 LSM11P83369 360 aaKnown RBP eCLIP6.93□□□□□ -1.3
CD44-238ENST00000534296 EN1Q05925 392 aaPredicted RBP6.93□□□□□ -1.3
CD44-238ENST00000534296 RBM33Q96EV2 1170 aaKnown RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms