RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	C2orf72	A6NCS6	295 aa		12.01	□□□□□ -0.49
ATM-223	ENST00000533979	ST18	O60284	1047 aa		12.01	□□□□□ -0.49
ATM-223	ENST00000533979	LCE2D	Q5TA82	110 aa	Predicted RBP	12.01	□□□□□ -0.49
ATM-223	ENST00000533979	TMC2	Q8TDI7	906 aa		12.01	□□□□□ -0.49
ATM-223	ENST00000533979	HOXB3	P14651	431 aa	Predicted RBP	11.99	□□□□□ -0.49
ATM-223	ENST00000533979	DOK7	Q18PE1	504 aa		11.99	□□□□□ -0.49
ATM-223	ENST00000533979	GPHN	Q9NQX3	736 aa	Predicted RBP	11.98	□□□□□ -0.49
ATM-223	ENST00000533979	PDE4A	P27815	886 aa		11.95	□□□□□ -0.5
ATM-223	ENST00000533979	FOXK1	P85037	733 aa		11.94	□□□□□ -0.5
ATM-223	ENST00000533979	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.93	□□□□□ -0.5
ATM-223	ENST00000533979	ZNF710	Q8N1W2	664 aa		11.93	□□□□□ -0.5
ATM-223	ENST00000533979	ZSWIM6	Q9HCJ5	1215 aa		11.93	□□□□□ -0.5
ATM-223	ENST00000533979	RIMBP2	O15034	1052 aa		11.92	□□□□□ -0.5
ATM-223	ENST00000533979	POTEM	A6NI47	508 aa		11.91	□□□□□ -0.5
ATM-223	ENST00000533979	POTEG	Q6S5H5	508 aa		11.91	□□□□□ -0.5
ATM-223	ENST00000533979	CFAP44	Q96MT7	982 aa		11.91	□□□□□ -0.5
ATM-223	ENST00000533979	CRISPLD2	Q9H0B8	497 aa		11.91	□□□□□ -0.5
ATM-223	ENST00000533979	SLC34A2	O95436	690 aa		11.9	□□□□□ -0.5
ATM-223	ENST00000533979	HOXB1	P14653	301 aa	Predicted RBP	11.89	□□□□□ -0.51
ATM-223	ENST00000533979	DSG2	Q14126	1118 aa		11.87	□□□□□ -0.51
ATM-223	ENST00000533979	PLPP6	Q8IY26	295 aa		11.87	□□□□□ -0.51
ATM-223	ENST00000533979	NCKAP5L	Q9HCH0	1330 aa		11.86	□□□□□ -0.51
ATM-223	ENST00000533979	GPR153	Q6NV75	609 aa		11.86	□□□□□ -0.51
ATM-223	ENST00000533979	LARP6	Q9BRS8	491 aa	Known RBP	11.84	□□□□□ -0.51
ATM-223	ENST00000533979	CADPS2	Q86UW7	1296 aa		11.83	□□□□□ -0.52
ATM-223	ENST00000533979	PCDH10	Q9P2E7	1040 aa		11.83	□□□□□ -0.52
ATM-223	ENST00000533979	MARVELD3	Q96A59	401 aa		11.82	□□□□□ -0.52
ATM-223	ENST00000533979	ARSI	Q5FYB1	569 aa		11.81	□□□□□ -0.52
ATM-223	ENST00000533979	PTCD2	Q8WV60	388 aa	Known RBP	11.81	□□□□□ -0.52
ATM-223	ENST00000533979	MFSD10	Q14728	455 aa		11.8	□□□□□ -0.52
ATM-223	ENST00000533979	PPP1R15B	Q5SWA1	713 aa		11.8	□□□□□ -0.52
ATM-223	ENST00000533979	EMP3	P54852	163 aa		11.79	□□□□□ -0.52
ATM-223	ENST00000533979	DDX27	Q96GQ7	796 aa	Known RBP	11.79	□□□□□ -0.52
ATM-223	ENST00000533979	TBC1D12	O60347	775 aa		11.78	□□□□□ -0.52
ATM-223	ENST00000533979	PCDHGA4	Q9Y5G9	962 aa		11.78	□□□□□ -0.52
ATM-223	ENST00000533979	FAM205C	A6NFA0	338 aa		11.73	□□□□□ -0.53
ATM-223	ENST00000533979	ERBB3	P21860	1342 aa		11.72	□□□□□ -0.53
ATM-223	ENST00000533979	OXER1	Q8TDS5	423 aa		11.72	□□□□□ -0.53
ATM-223	ENST00000533979	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.72	□□□□□ -0.53	8e-7	■■■■□ 24
ATM-223	ENST00000533979	CDAN1	Q8IWY9	1227 aa		11.71	□□□□□ -0.53
ATM-223	ENST00000533979	KDM4F	A0A1W2PPD8	638 aa		11.7	□□□□□ -0.54
ATM-223	ENST00000533979	POTEB3	A0JP26	581 aa		11.7	□□□□□ -0.54
ATM-223	ENST00000533979	POTEB	Q6S5H4	581 aa		11.7	□□□□□ -0.54
ATM-223	ENST00000533979	HS3ST6	Q96QI5	342 aa		11.7	□□□□□ -0.54
ATM-223	ENST00000533979	NUDT7	P0C024	238 aa		11.69	□□□□□ -0.54
ATM-223	ENST00000533979	PLCB2	Q00722	1185 aa		11.69	□□□□□ -0.54
ATM-223	ENST00000533979	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.68	□□□□□ -0.54
ATM-223	ENST00000533979	TSHZ2	Q9NRE2	1034 aa		11.68	□□□□□ -0.54
ATM-223	ENST00000533979	CAMK2B	Q13554	666 aa		11.66	□□□□□ -0.54
ATM-223	ENST00000533979	WDR70	Q9NW82	654 aa		11.66	□□□□□ -0.54
ATM-223	ENST00000533979	MAP3K9	P80192	1104 aa		11.64	□□□□□ -0.55
ATM-223	ENST00000533979	VARS2	Q5ST30	1063 aa	Known RBP	11.64	□□□□□ -0.55
ATM-223	ENST00000533979	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.64	□□□□□ -0.55
ATM-223	ENST00000533979	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.64	□□□□□ -0.55
ATM-223	ENST00000533979	LHX6	Q9UPM6	363 aa		11.64	□□□□□ -0.55
ATM-223	ENST00000533979	ZNF687	Q8N1G0	1237 aa		11.63	□□□□□ -0.55
ATM-223	ENST00000533979	EMILIN3	Q9NT22	766 aa		11.63	□□□□□ -0.55
ATM-223	ENST00000533979	PSD	A5PKW4	1024 aa	Predicted RBP	11.61	□□□□□ -0.55
ATM-223	ENST00000533979	E2F4	Q16254	413 aa		11.59	□□□□□ -0.55
ATM-223	ENST00000533979	EVI5	O60447	810 aa		11.57	□□□□□ -0.56
ATM-223	ENST00000533979	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.54	□□□□□ -0.56
ATM-223	ENST00000533979	KRTAP3-3	Q9BYR6	98 aa		11.52	□□□□□ -0.57
ATM-223	ENST00000533979	KRTAP3-2	Q9BYR7	98 aa		11.52	□□□□□ -0.57
ATM-223	ENST00000533979	DPYSL4	O14531	572 aa		11.49	□□□□□ -0.57
ATM-223	ENST00000533979	PBX2	P40425	430 aa		11.49	□□□□□ -0.57
ATM-223	ENST00000533979	PPP4R3B	Q5MIZ7	849 aa		11.49	□□□□□ -0.57
ATM-223	ENST00000533979	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.48	□□□□□ -0.57
ATM-223	ENST00000533979	PTGER2	P43116	358 aa		11.47	□□□□□ -0.57
ATM-223	ENST00000533979	FOSB	P53539	338 aa		11.47	□□□□□ -0.57
ATM-223	ENST00000533979	HAP1	P54257	671 aa	Predicted RBP	11.47	□□□□□ -0.57
ATM-223	ENST00000533979	ARHGAP33	O14559	1287 aa		11.45	□□□□□ -0.58
ATM-223	ENST00000533979	POTEE	Q6S8J3	1075 aa		11.45	□□□□□ -0.58
ATM-223	ENST00000533979	ZNF454	Q8N9F8	522 aa		11.45	□□□□□ -0.58
ATM-223	ENST00000533979	JPH4	Q96JJ6	628 aa		11.44	□□□□□ -0.58
ATM-223	ENST00000533979	SPNS2	Q8IVW8	549 aa		11.43	□□□□□ -0.58
ATM-223	ENST00000533979	ARHGEF1	Q92888	912 aa	Known RBP	11.43	□□□□□ -0.58
ATM-223	ENST00000533979	PHF14	O94880	888 aa		11.42	□□□□□ -0.58
ATM-223	ENST00000533979	PDIA6	Q15084	440 aa		11.42	□□□□□ -0.58
ATM-223	ENST00000533979	ZDHHC16	Q969W1	377 aa		11.42	□□□□□ -0.58
ATM-223	ENST00000533979	BCL2L12	Q9HB09	334 aa		11.41	□□□□□ -0.58
ATM-223	ENST00000533979	PCDHGA10	Q9Y5H3	936 aa		11.41	□□□□□ -0.58
ATM-223	ENST00000533979	VSIG10	Q8N0Z9	540 aa		11.4	□□□□□ -0.58
ATM-223	ENST00000533979	EPAS1	Q99814	870 aa		11.4	□□□□□ -0.58
ATM-223	ENST00000533979	AXIN2	Q9Y2T1	843 aa		11.4	□□□□□ -0.58
ATM-223	ENST00000533979	LSM11	P83369	360 aa	Known RBP eCLIP	11.39	□□□□□ -0.59
ATM-223	ENST00000533979	FBXW7	Q969H0	707 aa		11.39	□□□□□ -0.59
ATM-223	ENST00000533979	PLSCR2	Q9NRY7	297 aa		11.39	□□□□□ -0.59
ATM-223	ENST00000533979	ANKRD13D	Q6ZTN6	518 aa		11.38	□□□□□ -0.59
ATM-223	ENST00000533979	TYW1B	Q6NUM6	668 aa		11.37	□□□□□ -0.59
ATM-223	ENST00000533979	KDM2A	Q9Y2K7	1162 aa		11.37	□□□□□ -0.59
ATM-223	ENST00000533979	P3H3	Q8IVL6	736 aa		11.36	□□□□□ -0.59
ATM-223	ENST00000533979	KCNH8	Q96L42	1107 aa		11.36	□□□□□ -0.59
ATM-223	ENST00000533979	PTPRE	P23469	700 aa		11.35	□□□□□ -0.59
ATM-223	ENST00000533979	PSEN2	P49810	448 aa		11.35	□□□□□ -0.59
ATM-223	ENST00000533979	KCNV2	Q8TDN2	545 aa		11.35	□□□□□ -0.59
ATM-223	ENST00000533979	ADAM33	Q9BZ11	813 aa		11.35	□□□□□ -0.59
ATM-223	ENST00000533979	TK2	O00142	265 aa		11.34	□□□□□ -0.59
ATM-223	ENST00000533979	DDX12P	Q92771	950 aa		11.34	□□□□□ -0.59
ATM-223	ENST00000533979	DMRTA1	Q5VZB9	504 aa		11.32	□□□□□ -0.6
ATM-223	ENST00000533979	KCNK17	Q96T54	332 aa		11.32	□□□□□ -0.6

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