RNA–Protein interactions for RNA: ENST00000531967.5

ECHDC1-222, Transcript of ethylmalonyl-CoA decarboxylase 1, human

APPRIS ALT2 TSL 2 BASIC

Gene ECHDC1, Length 2,585 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-222	ENST00000531967	PROSER2	Q86WR7	435 aa	Predicted RBP	7.76	□□□□□ -1.17
ECHDC1-222	ENST00000531967	CWC22	Q9HCG8	908 aa	Known RBP	7.76	□□□□□ -1.17
ECHDC1-222	ENST00000531967	DDRGK1	Q96HY6	314 aa		7.74	□□□□□ -1.17
ECHDC1-222	ENST00000531967	PATL2	C9JE40	543 aa	Known RBP	7.74	□□□□□ -1.17
ECHDC1-222	ENST00000531967	SGIP1	Q9BQI5	828 aa		7.73	□□□□□ -1.17
ECHDC1-222	ENST00000531967	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	7.72	□□□□□ -1.17
ECHDC1-222	ENST00000531967	MCM6	Q14566	821 aa		7.72	□□□□□ -1.17
ECHDC1-222	ENST00000531967	FNBP4	Q8N3X1	1017 aa	Predicted RBP	7.72	□□□□□ -1.17
ECHDC1-222	ENST00000531967	ZFP91	Q96JP5	570 aa	Predicted RBP	7.72	□□□□□ -1.17
ECHDC1-222	ENST00000531967	GPIHBP1	Q8IV16	184 aa		7.72	□□□□□ -1.17
ECHDC1-222	ENST00000531967	ARIH1	Q9Y4X5	557 aa	Predicted RBP	7.71	□□□□□ -1.18
ECHDC1-222	ENST00000531967	MYT1L	Q9UL68	1186 aa		7.7	□□□□□ -1.18
ECHDC1-222	ENST00000531967	IGSF5	Q9NSI5	407 aa		7.69	□□□□□ -1.18
ECHDC1-222	ENST00000531967	CCDC27	Q2M243	656 aa		7.68	□□□□□ -1.18
ECHDC1-222	ENST00000531967	CERS3	Q8IU89	383 aa		7.68	□□□□□ -1.18
ECHDC1-222	ENST00000531967	GOPC	Q9HD26	462 aa		7.68	□□□□□ -1.18
ECHDC1-222	ENST00000531967	PLSCR2	Q9NRY7	297 aa		7.68	□□□□□ -1.18
ECHDC1-222	ENST00000531967	CANX	P27824	592 aa	Known RBP	7.68	□□□□□ -1.18
ECHDC1-222	ENST00000531967	KCNA1	Q09470	495 aa		7.68	□□□□□ -1.18
ECHDC1-222	ENST00000531967	RBM26	Q5T8P6	1007 aa	Known RBP	7.68	□□□□□ -1.18
ECHDC1-222	ENST00000531967	BCCIP	Q9P287	314 aa	Known RBP eCLIP	7.68	□□□□□ -1.18
ECHDC1-222	ENST00000531967	ARID4B	Q4LE39	1312 aa	Predicted RBP	7.68	□□□□□ -1.18
ECHDC1-222	ENST00000531967	UNCX	A6NJT0	531 aa		7.67	□□□□□ -1.18
ECHDC1-222	ENST00000531967	POM121	Q96HA1	1249 aa		7.66	□□□□□ -1.18
ECHDC1-222	ENST00000531967	PPP1R15A	O75807	674 aa	Predicted RBP	7.66	□□□□□ -1.18
ECHDC1-222	ENST00000531967	ZNF592	Q92610	1267 aa		7.65	□□□□□ -1.18
ECHDC1-222	ENST00000531967	PSMD1	Q99460	953 aa		7.65	□□□□□ -1.18
ECHDC1-222	ENST00000531967	BRD1	O95696	1058 aa		7.64	□□□□□ -1.19
ECHDC1-222	ENST00000531967	DCAF8	Q5TAQ9	597 aa		7.63	□□□□□ -1.19
ECHDC1-222	ENST00000531967	CC2D2B	Q6DHV5	1058 aa		7.63	□□□□□ -1.19
ECHDC1-222	ENST00000531967	ACIN1	Q9UKV3	1341 aa	Known RBP	7.62	□□□□□ -1.19
ECHDC1-222	ENST00000531967	BRPF3	Q9ULD4	1205 aa		7.62	□□□□□ -1.19
ECHDC1-222	ENST00000531967	NUBP1	P53384	320 aa		7.62	□□□□□ -1.19
ECHDC1-222	ENST00000531967	TICAM2	Q86XR7	235 aa		7.62	□□□□□ -1.19
ECHDC1-222	ENST00000531967	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	7.62	□□□□□ -1.19
ECHDC1-222	ENST00000531967	SMARCA5	O60264	1052 aa	Predicted RBP	7.61	□□□□□ -1.19
ECHDC1-222	ENST00000531967	SPATA32	Q96LK8	384 aa		7.6	□□□□□ -1.19
ECHDC1-222	ENST00000531967	PCMTD1	Q96MG8	357 aa	Predicted RBP	7.6	□□□□□ -1.19
ECHDC1-222	ENST00000531967	CADPS	Q9ULU8	1353 aa		7.6	□□□□□ -1.19
ECHDC1-222	ENST00000531967	DCAF8L1	A6NGE4	600 aa		7.6	□□□□□ -1.19
ECHDC1-222	ENST00000531967	SND1	Q7KZF4	910 aa	Known RBP eCLIP	7.6	□□□□□ -1.19
ECHDC1-222	ENST00000531967	CLSTN1	O94985	981 aa		7.59	□□□□□ -1.2
ECHDC1-222	ENST00000531967	PARP9	Q8IXQ6	854 aa		7.59	□□□□□ -1.2
ECHDC1-222	ENST00000531967	CHRM1	P11229	460 aa	Predicted RBP	7.57	□□□□□ -1.2
ECHDC1-222	ENST00000531967	ANKRD13A	Q8IZ07	590 aa		7.57	□□□□□ -1.2
ECHDC1-222	ENST00000531967	NEFL	P07196	543 aa		7.57	□□□□□ -1.2
ECHDC1-222	ENST00000531967	RBM47	A0AV96	593 aa	Known RBP	7.56	□□□□□ -1.2
ECHDC1-222	ENST00000531967	KDM4A	O75164	1064 aa		7.56	□□□□□ -1.2
ECHDC1-222	ENST00000531967	MLLT3	P42568	568 aa	Predicted RBP	7.56	□□□□□ -1.2
ECHDC1-222	ENST00000531967	IVNS1ABP	Q9Y6Y0	642 aa		7.56	□□□□□ -1.2
ECHDC1-222	ENST00000531967	AMHR2	Q16671	573 aa		7.55	□□□□□ -1.2
ECHDC1-222	ENST00000531967	NCL	P19338	710 aa	Known RBP	7.55	□□□□□ -1.2
ECHDC1-222	ENST00000531967	PABPN1	Q86U42	306 aa	Known RBP eCLIP	7.55	□□□□□ -1.2
ECHDC1-222	ENST00000531967	ZNF330	Q9Y3S2	320 aa	Predicted RBP	7.55	□□□□□ -1.2
ECHDC1-222	ENST00000531967	TMED8	Q6PL24	325 aa	Predicted RBP	7.54	□□□□□ -1.2
ECHDC1-222	ENST00000531967	DRC1	Q96MC2	740 aa		7.54	□□□□□ -1.2
ECHDC1-222	ENST00000531967	KIAA1522	Q9P206	1035 aa	Predicted RBP	7.54	□□□□□ -1.2
ECHDC1-222	ENST00000531967	COG6	Q9Y2V7	657 aa		7.54	□□□□□ -1.2
ECHDC1-222	ENST00000531967	UST	Q9Y2C2	406 aa		7.53	□□□□□ -1.2
ECHDC1-222	ENST00000531967	SSUH2	Q9Y2M2	353 aa		7.52	□□□□□ -1.21
ECHDC1-222	ENST00000531967	MINK1	Q8N4C8	1332 aa	Predicted RBP	7.51	□□□□□ -1.21
ECHDC1-222	ENST00000531967	CCDC102A	Q96A19	550 aa		7.51	□□□□□ -1.21
ECHDC1-222	ENST00000531967	ZBTB12	Q9Y330	459 aa	Predicted RBP	7.51	□□□□□ -1.21
ECHDC1-222	ENST00000531967	MRRF	Q96E11	262 aa	Known RBP	7.51	□□□□□ -1.21
ECHDC1-222	ENST00000531967	GPR37	O15354	613 aa		7.5	□□□□□ -1.21
ECHDC1-222	ENST00000531967	ZNF526	Q8TF50	670 aa	Predicted RBP	7.5	□□□□□ -1.21
ECHDC1-222	ENST00000531967	SREK1	Q8WXA9	508 aa	Known RBP	7.5	□□□□□ -1.21
ECHDC1-222	ENST00000531967	FAM212A	Q96EL1	285 aa		7.5	□□□□□ -1.21
ECHDC1-222	ENST00000531967	PRDM16	Q9HAZ2	1276 aa		7.49	□□□□□ -1.21
ECHDC1-222	ENST00000531967	IRX6	P78412	446 aa	Predicted RBP	7.49	□□□□□ -1.21
ECHDC1-222	ENST00000531967	MFRP	Q9BY79	579 aa		7.48	□□□□□ -1.21
ECHDC1-222	ENST00000531967	NOL8	Q76FK4	1167 aa	Known RBP	7.48	□□□□□ -1.21
ECHDC1-222	ENST00000531967	ANKRD62	A6NC57	917 aa		7.47	□□□□□ -1.21
ECHDC1-222	ENST00000531967	PBXIP1	Q96AQ6	731 aa		7.47	□□□□□ -1.21
ECHDC1-222	ENST00000531967	CALR3	Q96L12	384 aa	Known RBP	7.47	□□□□□ -1.21
ECHDC1-222	ENST00000531967	NCKAP5L	Q9HCH0	1330 aa		7.47	□□□□□ -1.21
ECHDC1-222	ENST00000531967	ZC3H4	Q9UPT8	1303 aa	Known RBP	7.47	□□□□□ -1.21
ECHDC1-222	ENST00000531967	PPP1R37	O75864	691 aa		7.47	□□□□□ -1.21
ECHDC1-222	ENST00000531967	CSB-PGBD3	P0DP91	1061 aa		7.47	□□□□□ -1.21
ECHDC1-222	ENST00000531967	SH3D19	Q5HYK7	790 aa		7.47	□□□□□ -1.21
ECHDC1-222	ENST00000531967	CARNS1	A5YM72	827 aa		7.46	□□□□□ -1.21
ECHDC1-222	ENST00000531967	MAP2K5	Q13163	448 aa		7.46	□□□□□ -1.21
ECHDC1-222	ENST00000531967	BCL11A	Q9H165	835 aa		7.46	□□□□□ -1.21
ECHDC1-222	ENST00000531967	SPDYE2B	A6NHP3	402 aa		7.46	□□□□□ -1.22
ECHDC1-222	ENST00000531967	SPDYE5	A6NIY4	337 aa		7.46	□□□□□ -1.22
ECHDC1-222	ENST00000531967	IRF6	O14896	467 aa		7.46	□□□□□ -1.22
ECHDC1-222	ENST00000531967	SPDYE6	P0CI01	402 aa		7.46	□□□□□ -1.22
ECHDC1-222	ENST00000531967	SPDYE2	Q495Y8	402 aa		7.46	□□□□□ -1.22
ECHDC1-222	ENST00000531967	TXNDC2	Q86VQ3	553 aa		7.46	□□□□□ -1.22
ECHDC1-222	ENST00000531967	C8orf37	Q96NL8	207 aa		7.46	□□□□□ -1.22
ECHDC1-222	ENST00000531967	LARP6	Q9BRS8	491 aa	Known RBP	7.46	□□□□□ -1.22
ECHDC1-222	ENST00000531967	NISCH	Q9Y2I1	1504 aa		7.46	□□□□□ -1.22
ECHDC1-222	ENST00000531967	TCF3	P15923	654 aa		7.45	□□□□□ -1.22
ECHDC1-222	ENST00000531967	TSR1	Q2NL82	804 aa	Known RBP	7.45	□□□□□ -1.22
ECHDC1-222	ENST00000531967	TBC1D12	O60347	775 aa		7.45	□□□□□ -1.22
ECHDC1-222	ENST00000531967	TTLL12	Q14166	644 aa	Predicted RBP	7.45	□□□□□ -1.22
ECHDC1-222	ENST00000531967	SKIV2L	Q15477	1246 aa	Known RBP	7.45	□□□□□ -1.22
ECHDC1-222	ENST00000531967	MS4A1	P11836	297 aa		7.44	□□□□□ -1.22
ECHDC1-222	ENST00000531967	HIRIP3	Q9BW71	556 aa	Predicted RBP	7.44	□□□□□ -1.22
ECHDC1-222	ENST00000531967	SIRT1	Q96EB6	747 aa		7.44	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms