RNA–Protein interactions for RNA: ENST00000531336.1

SMPD1-206, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 2

Gene SMPD1, Length 650 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-206ENST00000531336 NCOA2Q15596 1464 aa21.66■■□□□ 1.06
SMPD1-206ENST00000531336 NEO1Q92859 1461 aa21.65■■□□□ 1.06
SMPD1-206ENST00000531336 CCNB3Q8WWL7 1395 aa21.63■■□□□ 1.05
SMPD1-206ENST00000531336 GPATCH8Q9UKJ3 1502 aaKnown RBP21.62■■□□□ 1.05
SMPD1-206ENST00000531336 AKNAQ7Z591 1439 aa21.6■■□□□ 1.05
SMPD1-206ENST00000531336 COL17A1Q9UMD9 1497 aaPredicted RBP21.58■■□□□ 1.05
SMPD1-206ENST00000531336 EFCAB2Q5VUJ9 269 aa21.58■■□□□ 1.05
SMPD1-206ENST00000531336 PHLDB1Q86UU1 1377 aa21.58■■□□□ 1.04
SMPD1-206ENST00000531336 ADGRL1O94910 1474 aa21.57■■□□□ 1.04
SMPD1-206ENST00000531336 SAMD9LQ8IVG5 1584 aa21.56■■□□□ 1.04
SMPD1-206ENST00000531336 ABCC1P33527 1531 aa21.55■■□□□ 1.04
SMPD1-206ENST00000531336 FRMPD1Q5SYB0 1578 aa21.54■■□□□ 1.04
SMPD1-206ENST00000531336 RICTORQ6R327 1708 aa21.54■■□□□ 1.04
SMPD1-206ENST00000531336 CFDP1Q9UEE9 299 aaPredicted RBP21.53■■□□□ 1.04
SMPD1-206ENST00000531336 ZNF777Q9ULD5 760 aaPredicted RBP21.52■■□□□ 1.04
SMPD1-206ENST00000531336 DENND4BO75064 1496 aaPredicted RBP21.52■■□□□ 1.03
SMPD1-206ENST00000531336 SCAPERQ9BY12 1400 aa21.51■■□□□ 1.03
SMPD1-206ENST00000531336 MYOM3Q5VTT5 1437 aa21.5■■□□□ 1.03
SMPD1-206ENST00000531336 PPARGC1BQ86YN6 1023 aaKnown RBP21.5■■□□□ 1.03
SMPD1-206ENST00000531336 SYCP2Q9BX26 1530 aa21.5■■□□□ 1.03
SMPD1-206ENST00000531336 POGZQ7Z3K3 1410 aa21.48■■□□□ 1.03
SMPD1-206ENST00000531336 RAPGEF3O95398 923 aa21.47■■□□□ 1.03
SMPD1-206ENST00000531336 CAMSAP2Q08AD1 1489 aa21.46■■□□□ 1.03
SMPD1-206ENST00000531336 ARHGEF12Q9NZN5 1544 aa21.46■■□□□ 1.03
SMPD1-206ENST00000531336 PLEKHH2Q8IVE3 1493 aa21.45■■□□□ 1.03
SMPD1-206ENST00000531336 ZNF644Q9H582 1327 aaPredicted RBP21.44■■□□□ 1.02
SMPD1-206ENST00000531336 MIA2Q96PC5 1412 aa21.43■■□□□ 1.02
SMPD1-206ENST00000531336 ZNF518AQ6AHZ1 1483 aa21.43■■□□□ 1.02
SMPD1-206ENST00000531336 ZMYM4Q5VZL5 1548 aa21.43■■□□□ 1.02
SMPD1-206ENST00000531336 PTPN23Q9H3S7 1636 aa21.43■■□□□ 1.02
SMPD1-206ENST00000531336 KDM5CP41229 1560 aa21.41■■□□□ 1.02
SMPD1-206ENST00000531336 FGD6Q6ZV73 1430 aa21.41■■□□□ 1.02
SMPD1-206ENST00000531336 TRAPPC8Q9Y2L5 1435 aa21.41■■□□□ 1.02
SMPD1-206ENST00000531336 KIAA1107Q9UPP5 1409 aa21.4■■□□□ 1.02
SMPD1-206ENST00000531336 HECW2Q9P2P5 1572 aa21.39■■□□□ 1.01
SMPD1-206ENST00000531336 ARHGEF40Q8TER5 1519 aa21.39■■□□□ 1.01
SMPD1-206ENST00000531336 HNRNPMP52272 730 aaKnown RBP eCLIP21.38■■□□□ 1.01
SMPD1-206ENST00000531336 ZFYVE16Q7Z3T8 1539 aa21.37■■□□□ 1.01
SMPD1-206ENST00000531336 AFAP1Q8N556 730 aa21.36■■□□□ 1.01
SMPD1-206ENST00000531336 MBD5Q9P267 1494 aa21.36■■□□□ 1.01
SMPD1-206ENST00000531336 ARHGEF5Q12774 1597 aa21.35■■□□□ 1.01
SMPD1-206ENST00000531336 TCOF1Q13428 1488 aaKnown RBP21.34■■□□□ 1.01
SMPD1-206ENST00000531336 CCDC141Q6ZP82 1450 aa21.34■■□□□ 1.01
SMPD1-206ENST00000531336 MAGI2Q86UL8 1455 aa21.32■■□□□ 1
SMPD1-206ENST00000531336 INO80Q9ULG1 1556 aaPredicted RBP21.32■■□□□ 1
SMPD1-206ENST00000531336 KIDINS220Q9ULH0 1771 aa21.32■■□□□ 1
SMPD1-206ENST00000531336 CROCC2H7BZ55 1655 aa21.31■■□□□ 1
SMPD1-206ENST00000531336 YEATS2Q9ULM3 1422 aa21.31■■□□□ 1
SMPD1-206ENST00000531336 ABCA6Q8N139 1617 aa21.31■■□□□ 1
SMPD1-206ENST00000531336 MYT1LQ9UL68 1186 aa21.31■■□□□ 1
SMPD1-206ENST00000531336 ATP7AQ04656 1500 aa21.3■■□□□ 1
SMPD1-206ENST00000531336 MLH3Q9UHC1 1453 aa21.3■■□□□ 1
SMPD1-206ENST00000531336 DIP2CQ9Y2E4 1556 aa21.29■■□□□ 1
SMPD1-206ENST00000531336 DNMT1P26358 1616 aaKnown RBP21.29■■□□□ 1
SMPD1-206ENST00000531336 SPAG9O60271 1321 aaKnown RBP21.28■■□□□ 1
SMPD1-206ENST00000531336 FAM50AQ14320 339 aaKnown RBP21.27■■□□□ 1
SMPD1-206ENST00000531336 SIGLEC1Q9BZZ2 1709 aa21.24■□□□□ 0.99
SMPD1-206ENST00000531336 MAST1Q9Y2H9 1570 aa21.24■□□□□ 0.99
SMPD1-206ENST00000531336 DAPK1P53355 1430 aa21.23■□□□□ 0.99
SMPD1-206ENST00000531336 RSPH4AQ5TD94 716 aa21.23■□□□□ 0.99
SMPD1-206ENST00000531336 ADGBQ8N7X0 1667 aa21.23■□□□□ 0.99
SMPD1-206ENST00000531336 C9orf84Q5VXU9 1444 aa21.22■□□□□ 0.99
SMPD1-206ENST00000531336 ATP10AO60312 1499 aa21.22■□□□□ 0.99
SMPD1-206ENST00000531336 ABCC5O15440 1437 aa21.21■□□□□ 0.99
SMPD1-206ENST00000531336 RRBP1Q9P2E9 1410 aaKnown RBP21.21■□□□□ 0.99
SMPD1-206ENST00000531336 SHANK2Q9UPX8 1470 aa21.2■□□□□ 0.98
SMPD1-206ENST00000531336 RTEL1-TNFRSF6BF6WH68 1400 aa21.2■□□□□ 0.98
SMPD1-206ENST00000531336 TSPY4P0CV99 314 aa21.19■□□□□ 0.98
SMPD1-206ENST00000531336 TSPY10P0CW01 314 aa21.19■□□□□ 0.98
SMPD1-206ENST00000531336 REREQ9P2R6 1566 aa21.19■□□□□ 0.98
SMPD1-206ENST00000531336 PLXNC1O60486 1568 aa21.18■□□□□ 0.98
SMPD1-206ENST00000531336 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.15■□□□□ 0.98
SMPD1-206ENST00000531336 ARID4BQ4LE39 1312 aaPredicted RBP21.14■□□□□ 0.97
SMPD1-206ENST00000531336 BCORL1Q5H9F3 1711 aa21.14■□□□□ 0.97
SMPD1-206ENST00000531336 A2MP01023 1474 aa21.13■□□□□ 0.97
SMPD1-206ENST00000531336 CHIC2Q9UKJ5 165 aa21.11■□□□□ 0.97
SMPD1-206ENST00000531336 ITGAEP38570 1179 aa21.1■□□□□ 0.97
SMPD1-206ENST00000531336 AGLP35573 1532 aa21.09■□□□□ 0.97
SMPD1-206ENST00000531336 PTPRKQ15262 1439 aa21.09■□□□□ 0.97
SMPD1-206ENST00000531336 ADGRL2O95490 1459 aa21.08■□□□□ 0.97
SMPD1-206ENST00000531336 ANKRD30AQ9BXX3 1397 aa21.07■□□□□ 0.96
SMPD1-206ENST00000531336 KIF15Q9NS87 1388 aa21.07■□□□□ 0.96
SMPD1-206ENST00000531336 ADAMTSL3P82987 1691 aa21.06■□□□□ 0.96
SMPD1-206ENST00000531336 DUOX2Q9NRD8 1548 aa21.06■□□□□ 0.96
SMPD1-206ENST00000531336 DHX29Q7Z478 1369 aaKnown RBP21.06■□□□□ 0.96
SMPD1-206ENST00000531336 FER1L4A9Z1Z3 1794 aa21.05■□□□□ 0.96
SMPD1-206ENST00000531336 MLECQ14165 292 aa21.05■□□□□ 0.96
SMPD1-206ENST00000531336 MADDQ8WXG6 1647 aa21.04■□□□□ 0.96
SMPD1-206ENST00000531336 RRP7BPQ9NSQ0 103 aa21.04■□□□□ 0.96
SMPD1-206ENST00000531336 EIF2AK4Q9P2K8 1649 aaKnown RBP21.04■□□□□ 0.96
SMPD1-206ENST00000531336 NCOA1Q15788 1441 aa21.04■□□□□ 0.96
SMPD1-206ENST00000531336 RIMS1Q86UR5 1692 aaKnown RBP21.02■□□□□ 0.95
SMPD1-206ENST00000531336 KDM4FA0A1W2PPD8 638 aa21■□□□□ 0.95
SMPD1-206ENST00000531336 ROCK1Q13464 1354 aa20.99■□□□□ 0.95
SMPD1-206ENST00000531336 ERBINQ96RT1 1412 aa20.99■□□□□ 0.95
SMPD1-206ENST00000531336 RNF17Q9BXT8 1623 aaKnown RBP20.98■□□□□ 0.95
SMPD1-206ENST00000531336 KIF3BO15066 747 aa20.97■□□□□ 0.95
SMPD1-206ENST00000531336 GCC2Q8IWJ2 1684 aa20.96■□□□□ 0.95
SMPD1-206ENST00000531336 CLTCQ00610 1675 aaKnown RBP20.94■□□□□ 0.94
SMPD1-206ENST00000531336 GGT6Q6P531 493 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms