RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SCAPERQ9BY12 1400 aa18.7■□□□□ 0.58
VPS28-214ENST00000531032 YEATS2Q9ULM3 1422 aa18.7■□□□□ 0.58
VPS28-214ENST00000531032 CDK11AQ9UQ88 783 aaPredicted RBP18.7■□□□□ 0.58
VPS28-214ENST00000531032 SIGLEC1Q9BZZ2 1709 aa18.69■□□□□ 0.58
VPS28-214ENST00000531032 ILDR1Q86SU0 546 aaPredicted RBP18.69■□□□□ 0.58
VPS28-214ENST00000531032 RIMS1Q86UR5 1692 aaKnown RBP18.67■□□□□ 0.58
VPS28-214ENST00000531032 CLIP1P30622 1438 aa18.66■□□□□ 0.58
VPS28-214ENST00000531032 EFCAB2Q5VUJ9 269 aa18.65■□□□□ 0.58
VPS28-214ENST00000531032 PCF11O94913 1555 aaKnown RBP18.64■□□□□ 0.58
VPS28-214ENST00000531032 CASKIN1Q8WXD9 1431 aa18.63■□□□□ 0.57
VPS28-214ENST00000531032 CCDC18Q5T9S5 1454 aa18.62■□□□□ 0.57
VPS28-214ENST00000531032 LMTK3Q96Q04 1460 aa18.62■□□□□ 0.57
VPS28-214ENST00000531032 ARHGAP5Q13017 1502 aa18.62■□□□□ 0.57
VPS28-214ENST00000531032 KDM5CP41229 1560 aa18.61■□□□□ 0.57
VPS28-214ENST00000531032 ZNF518AQ6AHZ1 1483 aa18.61■□□□□ 0.57
VPS28-214ENST00000531032 ATP10AO60312 1499 aa18.6■□□□□ 0.57
VPS28-214ENST00000531032 C9orf84Q5VXU9 1444 aa18.59■□□□□ 0.57
VPS28-214ENST00000531032 CDC42BPBQ9Y5S2 1711 aa18.59■□□□□ 0.57
VPS28-214ENST00000531032 FER1L4A9Z1Z3 1794 aa18.58■□□□□ 0.57
VPS28-214ENST00000531032 PREX2Q70Z35 1606 aa18.58■□□□□ 0.56
VPS28-214ENST00000531032 ARHGEF12Q9NZN5 1544 aa18.57■□□□□ 0.56
VPS28-214ENST00000531032 FYCO1Q9BQS8 1478 aa18.57■□□□□ 0.56
VPS28-214ENST00000531032 ABCC1P33527 1531 aa18.54■□□□□ 0.56
VPS28-214ENST00000531032 MLECQ14165 292 aa18.53■□□□□ 0.56
VPS28-214ENST00000531032 AFAP1Q8N556 730 aa18.53■□□□□ 0.56
VPS28-214ENST00000531032 REREQ9P2R6 1566 aa18.52■□□□□ 0.56
VPS28-214ENST00000531032 DIP2CQ9Y2E4 1556 aa18.52■□□□□ 0.56
VPS28-214ENST00000531032 CDC42BPAQ5VT25 1732 aa18.52■□□□□ 0.55
VPS28-214ENST00000531032 MLH3Q9UHC1 1453 aa18.51■□□□□ 0.55
VPS28-214ENST00000531032 ITSN2Q9NZM3 1697 aa18.5■□□□□ 0.55
VPS28-214ENST00000531032 ABCA6Q8N139 1617 aa18.49■□□□□ 0.55
VPS28-214ENST00000531032 TRAPPC8Q9Y2L5 1435 aa18.49■□□□□ 0.55
VPS28-214ENST00000531032 PLPPR3Q6T4P5 718 aa18.48■□□□□ 0.55
VPS28-214ENST00000531032 HSPA2P54652 639 aa18.46■□□□□ 0.55
VPS28-214ENST00000531032 AGLP35573 1532 aa18.45■□□□□ 0.54
VPS28-214ENST00000531032 KIDINS220Q9ULH0 1771 aa18.44■□□□□ 0.54
VPS28-214ENST00000531032 PREX1Q8TCU6 1659 aa18.44■□□□□ 0.54
VPS28-214ENST00000531032 SAMD9LQ8IVG5 1584 aa18.43■□□□□ 0.54
VPS28-214ENST00000531032 FBXO41Q8TF61 875 aa18.43■□□□□ 0.54
VPS28-214ENST00000531032 MYT1LQ9UL68 1186 aa18.43■□□□□ 0.54
VPS28-214ENST00000531032 GPATCH8Q9UKJ3 1502 aaKnown RBP18.43■□□□□ 0.54
VPS28-214ENST00000531032 SYCP2Q9BX26 1530 aa18.4■□□□□ 0.54
VPS28-214ENST00000531032 CEBPAP49715 358 aaPredicted RBP18.39■□□□□ 0.53
VPS28-214ENST00000531032 KIAA1107Q9UPP5 1409 aa18.37■□□□□ 0.53
VPS28-214ENST00000531032 C3P01024 1663 aa18.37■□□□□ 0.53
VPS28-214ENST00000531032 PLEKHH2Q8IVE3 1493 aa18.36■□□□□ 0.53
VPS28-214ENST00000531032 ZNF777Q9ULD5 760 aaPredicted RBP18.36■□□□□ 0.53
VPS28-214ENST00000531032 SETD1BQ9UPS6 1966 aaKnown RBP18.35■□□□□ 0.53
VPS28-214ENST00000531032 MTUS2Q5JR59 1369 aa18.35■□□□□ 0.53
VPS28-214ENST00000531032 UHRF1BP1Q6BDS2 1440 aa18.34■□□□□ 0.53
VPS28-214ENST00000531032 CCNB3Q8WWL7 1395 aa18.34■□□□□ 0.53
VPS28-214ENST00000531032 INO80Q9ULG1 1556 aaPredicted RBP18.34■□□□□ 0.53
VPS28-214ENST00000531032 CFDP1Q9UEE9 299 aaPredicted RBP18.33■□□□□ 0.52
VPS28-214ENST00000531032 ATP7AQ04656 1500 aa18.33■□□□□ 0.52
VPS28-214ENST00000531032 CNTLNQ9NXG0 1405 aa18.32■□□□□ 0.52
VPS28-214ENST00000531032 SPAG9O60271 1321 aaKnown RBP18.32■□□□□ 0.52
VPS28-214ENST00000531032 HNRNPMP52272 730 aaKnown RBP eCLIP18.32■□□□□ 0.52
VPS28-214ENST00000531032 TIAM1Q13009 1591 aa18.32■□□□□ 0.52
VPS28-214ENST00000531032 EHBP1L1Q8N3D4 1523 aa18.32■□□□□ 0.52
VPS28-214ENST00000531032 CEP162Q5TB80 1403 aa18.32■□□□□ 0.52
VPS28-214ENST00000531032 PLXNC1O60486 1568 aa18.31■□□□□ 0.52
VPS28-214ENST00000531032 STRCQ7RTU9 1775 aa18.31■□□□□ 0.52
VPS28-214ENST00000531032 ESF1Q9H501 851 aaKnown RBP18.3■□□□□ 0.52
VPS28-214ENST00000531032 MROH2AA6NES4 1674 aa18.29■□□□□ 0.52
VPS28-214ENST00000531032 SUPT6HQ7KZ85 1726 aaKnown RBP18.28■□□□□ 0.52
VPS28-214ENST00000531032 A2MP01023 1474 aa18.26■□□□□ 0.51
VPS28-214ENST00000531032 MBD5Q9P267 1494 aa18.25■□□□□ 0.51
VPS28-214ENST00000531032 NPATQ14207 1427 aa18.24■□□□□ 0.51
VPS28-214ENST00000531032 CERKQ8TCT0 537 aa18.24■□□□□ 0.51
VPS28-214ENST00000531032 DMRT2Q9Y5R5 561 aa18.24■□□□□ 0.51
VPS28-214ENST00000531032 ADGBQ8N7X0 1667 aa18.24■□□□□ 0.51
VPS28-214ENST00000531032 ZNF644Q9H582 1327 aaPredicted RBP18.23■□□□□ 0.51
VPS28-214ENST00000531032 ZMYM3Q14202 1370 aa18.22■□□□□ 0.51
VPS28-214ENST00000531032 CLTCQ00610 1675 aaKnown RBP18.21■□□□□ 0.51
VPS28-214ENST00000531032 RTEL1-TNFRSF6BF6WH68 1400 aa18.2■□□□□ 0.5
VPS28-214ENST00000531032 PTPRTO14522 1441 aa18.2■□□□□ 0.5
VPS28-214ENST00000531032 NCOA2Q15596 1464 aa18.19■□□□□ 0.5
VPS28-214ENST00000531032 NCOA1Q15788 1441 aa18.18■□□□□ 0.5
VPS28-214ENST00000531032 CAMSAP2Q08AD1 1489 aa18.16■□□□□ 0.5
VPS28-214ENST00000531032 PPP6R1Q9UPN7 881 aa18.16■□□□□ 0.5
VPS28-214ENST00000531032 ZNF142P52746 1687 aaPredicted RBP18.15■□□□□ 0.5
VPS28-214ENST00000531032 PTPRKQ15262 1439 aa18.15■□□□□ 0.5
VPS28-214ENST00000531032 CCDC141Q6ZP82 1450 aa18.15■□□□□ 0.5
VPS28-214ENST00000531032 MYO3AQ8NEV4 1616 aa18.15■□□□□ 0.5
VPS28-214ENST00000531032 CAMSAP1Q5T5Y3 1602 aa18.14■□□□□ 0.49
VPS28-214ENST00000531032 GGT6Q6P531 493 aa18.14■□□□□ 0.49
VPS28-214ENST00000531032 DHX29Q7Z478 1369 aaKnown RBP18.14■□□□□ 0.49
VPS28-214ENST00000531032 VPS8Q8N3P4 1428 aa18.14■□□□□ 0.49
VPS28-214ENST00000531032 RSPH4AQ5TD94 716 aa18.11■□□□□ 0.49
VPS28-214ENST00000531032 ARHGEF5Q12774 1597 aa18.11■□□□□ 0.49
VPS28-214ENST00000531032 CEP170BQ9Y4F5 1589 aaPredicted RBP18.11■□□□□ 0.49
VPS28-214ENST00000531032 LTBP4Q8N2S1 1624 aa18.1■□□□□ 0.49
VPS28-214ENST00000531032 LRRC9Q6ZRR7 1453 aa18.1■□□□□ 0.49
VPS28-214ENST00000531032 FAM135AQ9P2D6 1515 aa18.09■□□□□ 0.49
VPS28-214ENST00000531032 PLA2R1Q13018 1463 aa18.09■□□□□ 0.49
VPS28-214ENST00000531032 MAP3K1Q13233 1512 aa18.08■□□□□ 0.48
VPS28-214ENST00000531032 LOC105371045A0A1W2PR82 267 aa18.07■□□□□ 0.48
VPS28-214ENST00000531032 KDM5DQ9BY66 1539 aa18.07■□□□□ 0.48
VPS28-214ENST00000531032 TCOF1Q13428 1488 aaKnown RBP18.06■□□□□ 0.48
VPS28-214ENST00000531032 KIF3BO15066 747 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms