RNA–Protein interactions for RNA: ENST00000527413.1

SSSCA1-204, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 2

Gene SSSCA1, Length 532 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-204ENST00000527413 PREX2Q70Z35 1606 aa22.1■■□□□ 1.13
SSSCA1-204ENST00000527413 ZFYVE16Q7Z3T8 1539 aa22.1■■□□□ 1.13
SSSCA1-204ENST00000527413 POGZQ7Z3K3 1410 aa22.09■■□□□ 1.13
SSSCA1-204ENST00000527413 ARHGAP5Q13017 1502 aa22.09■■□□□ 1.13
SSSCA1-204ENST00000527413 SCAPERQ9BY12 1400 aa22.08■■□□□ 1.13
SSSCA1-204ENST00000527413 CDC42BPAQ5VT25 1732 aa22.06■■□□□ 1.12
SSSCA1-204ENST00000527413 SIGLEC1Q9BZZ2 1709 aa22.06■■□□□ 1.12
SSSCA1-204ENST00000527413 MAGI2Q86UL8 1455 aa22.05■■□□□ 1.12
SSSCA1-204ENST00000527413 MADDQ8WXG6 1647 aa22.05■■□□□ 1.12
SSSCA1-204ENST00000527413 EFCAB2Q5VUJ9 269 aa22.04■■□□□ 1.12
SSSCA1-204ENST00000527413 YEATS2Q9ULM3 1422 aa22.04■■□□□ 1.12
SSSCA1-204ENST00000527413 HECW2Q9P2P5 1572 aa22.04■■□□□ 1.12
SSSCA1-204ENST00000527413 KDM5CP41229 1560 aa22.01■■□□□ 1.11
SSSCA1-204ENST00000527413 CEP162Q5TB80 1403 aa22■■□□□ 1.11
SSSCA1-204ENST00000527413 ZNF518AQ6AHZ1 1483 aa22■■□□□ 1.11
SSSCA1-204ENST00000527413 ITSN2Q9NZM3 1697 aa22■■□□□ 1.11
SSSCA1-204ENST00000527413 ARID4BQ4LE39 1312 aaPredicted RBP22■■□□□ 1.11
SSSCA1-204ENST00000527413 RIMS1Q86UR5 1692 aaKnown RBP21.99■■□□□ 1.11
SSSCA1-204ENST00000527413 PTPRMP28827 1452 aa21.99■■□□□ 1.11
SSSCA1-204ENST00000527413 ABCC1P33527 1531 aa21.99■■□□□ 1.11
SSSCA1-204ENST00000527413 FER1L4A9Z1Z3 1794 aa21.94■■□□□ 1.1
SSSCA1-204ENST00000527413 ATP10AO60312 1499 aa21.92■■□□□ 1.1
SSSCA1-204ENST00000527413 C9orf84Q5VXU9 1444 aa21.92■■□□□ 1.1
SSSCA1-204ENST00000527413 DIP2CQ9Y2E4 1556 aa21.91■■□□□ 1.1
SSSCA1-204ENST00000527413 ABCA6Q8N139 1617 aa21.91■■□□□ 1.1
SSSCA1-204ENST00000527413 SAMD9LQ8IVG5 1584 aa21.91■■□□□ 1.1
SSSCA1-204ENST00000527413 ARHGEF12Q9NZN5 1544 aa21.9■■□□□ 1.1
SSSCA1-204ENST00000527413 EHBP1L1Q8N3D4 1523 aa21.9■■□□□ 1.1
SSSCA1-204ENST00000527413 GPATCH8Q9UKJ3 1502 aaKnown RBP21.89■■□□□ 1.09
SSSCA1-204ENST00000527413 MTUS2Q5JR59 1369 aa21.87■■□□□ 1.09
SSSCA1-204ENST00000527413 REREQ9P2R6 1566 aa21.87■■□□□ 1.09
SSSCA1-204ENST00000527413 AFAP1Q8N556 730 aa21.87■■□□□ 1.09
SSSCA1-204ENST00000527413 MLH3Q9UHC1 1453 aa21.87■■□□□ 1.09
SSSCA1-204ENST00000527413 TRAPPC8Q9Y2L5 1435 aa21.87■■□□□ 1.09
SSSCA1-204ENST00000527413 KIDINS220Q9ULH0 1771 aa21.86■■□□□ 1.09
SSSCA1-204ENST00000527413 SYCP2Q9BX26 1530 aa21.85■■□□□ 1.09
SSSCA1-204ENST00000527413 TIAM1Q13009 1591 aa21.84■■□□□ 1.09
SSSCA1-204ENST00000527413 CCNB3Q8WWL7 1395 aa21.82■■□□□ 1.08
SSSCA1-204ENST00000527413 MLECQ14165 292 aa21.8■■□□□ 1.08
SSSCA1-204ENST00000527413 MYT1LQ9UL68 1186 aa21.8■■□□□ 1.08
SSSCA1-204ENST00000527413 ZNF777Q9ULD5 760 aaPredicted RBP21.79■■□□□ 1.08
SSSCA1-204ENST00000527413 SUPT6HQ7KZ85 1726 aaKnown RBP21.79■■□□□ 1.08
SSSCA1-204ENST00000527413 PLEKHH2Q8IVE3 1493 aa21.78■■□□□ 1.08
SSSCA1-204ENST00000527413 LOC105371045A0A1W2PR82 267 aa21.78■■□□□ 1.08
SSSCA1-204ENST00000527413 VPS8Q8N3P4 1428 aa21.77■■□□□ 1.08
SSSCA1-204ENST00000527413 INO80Q9ULG1 1556 aaPredicted RBP21.77■■□□□ 1.08
SSSCA1-204ENST00000527413 LMTK3Q96Q04 1460 aa21.77■■□□□ 1.07
SSSCA1-204ENST00000527413 AGLP35573 1532 aa21.76■■□□□ 1.07
SSSCA1-204ENST00000527413 KIAA1107Q9UPP5 1409 aa21.75■■□□□ 1.07
SSSCA1-204ENST00000527413 CFDP1Q9UEE9 299 aaPredicted RBP21.75■■□□□ 1.07
SSSCA1-204ENST00000527413 ATP7AQ04656 1500 aa21.75■■□□□ 1.07
SSSCA1-204ENST00000527413 NCOA2Q15596 1464 aa21.71■■□□□ 1.07
SSSCA1-204ENST00000527413 PREX1Q8TCU6 1659 aa21.7■■□□□ 1.06
SSSCA1-204ENST00000527413 HNRNPMP52272 730 aaKnown RBP eCLIP21.7■■□□□ 1.06
SSSCA1-204ENST00000527413 PLPPR3Q6T4P5 718 aa21.7■■□□□ 1.06
SSSCA1-204ENST00000527413 SPAG9O60271 1321 aaKnown RBP21.69■■□□□ 1.06
SSSCA1-204ENST00000527413 PLXNC1O60486 1568 aa21.68■■□□□ 1.06
SSSCA1-204ENST00000527413 C3P01024 1663 aa21.68■■□□□ 1.06
SSSCA1-204ENST00000527413 ADGBQ8N7X0 1667 aa21.67■■□□□ 1.06
SSSCA1-204ENST00000527413 LRRC9Q6ZRR7 1453 aa21.65■■□□□ 1.06
SSSCA1-204ENST00000527413 MAP3K1Q13233 1512 aa21.65■■□□□ 1.06
SSSCA1-204ENST00000527413 MBD5Q9P267 1494 aa21.64■■□□□ 1.06
SSSCA1-204ENST00000527413 ZNF644Q9H582 1327 aaPredicted RBP21.64■■□□□ 1.05
SSSCA1-204ENST00000527413 CAMSAP2Q08AD1 1489 aa21.64■■□□□ 1.05
SSSCA1-204ENST00000527413 MROH2AA6NES4 1674 aa21.63■■□□□ 1.05
SSSCA1-204ENST00000527413 A2MP01023 1474 aa21.61■■□□□ 1.05
SSSCA1-204ENST00000527413 SETD1BQ9UPS6 1966 aaKnown RBP21.61■■□□□ 1.05
SSSCA1-204ENST00000527413 CCDC141Q6ZP82 1450 aa21.59■■□□□ 1.05
SSSCA1-204ENST00000527413 CEBPAP49715 358 aaPredicted RBP21.59■■□□□ 1.05
SSSCA1-204ENST00000527413 CNTLNQ9NXG0 1405 aa21.58■■□□□ 1.05
SSSCA1-204ENST00000527413 ARHGEF5Q12774 1597 aa21.57■■□□□ 1.04
SSSCA1-204ENST00000527413 RTEL1-TNFRSF6BF6WH68 1400 aa21.57■■□□□ 1.04
SSSCA1-204ENST00000527413 HSPA2P54652 639 aa21.57■■□□□ 1.04
SSSCA1-204ENST00000527413 CLTCQ00610 1675 aaKnown RBP21.56■■□□□ 1.04
SSSCA1-204ENST00000527413 ESF1Q9H501 851 aaKnown RBP21.55■■□□□ 1.04
SSSCA1-204ENST00000527413 UHRF1BP1Q6BDS2 1440 aa21.53■■□□□ 1.04
SSSCA1-204ENST00000527413 KANK4Q5T7N3 995 aaPredicted RBP21.52■■□□□ 1.04
SSSCA1-204ENST00000527413 MYOM3Q5VTT5 1437 aa21.49■■□□□ 1.03
SSSCA1-204ENST00000527413 ILDR1Q86SU0 546 aaPredicted RBP21.48■■□□□ 1.03
SSSCA1-204ENST00000527413 STRCQ7RTU9 1775 aa21.48■■□□□ 1.03
SSSCA1-204ENST00000527413 MAST1Q9Y2H9 1570 aa21.48■■□□□ 1.03
SSSCA1-204ENST00000527413 RSPH4AQ5TD94 716 aa21.47■■□□□ 1.03
SSSCA1-204ENST00000527413 MIA2Q96PC5 1412 aa21.46■■□□□ 1.03
SSSCA1-204ENST00000527413 DHX29Q7Z478 1369 aaKnown RBP21.46■■□□□ 1.03
SSSCA1-204ENST00000527413 NPATQ14207 1427 aa21.46■■□□□ 1.03
SSSCA1-204ENST00000527413 ZMYM3Q14202 1370 aa21.44■■□□□ 1.02
SSSCA1-204ENST00000527413 MYO3AQ8NEV4 1616 aa21.44■■□□□ 1.02
SSSCA1-204ENST00000527413 GGT6Q6P531 493 aa21.43■■□□□ 1.02
SSSCA1-204ENST00000527413 CROCC2H7BZ55 1655 aa21.43■■□□□ 1.02
SSSCA1-204ENST00000527413 ZNF142P52746 1687 aaPredicted RBP21.43■■□□□ 1.02
SSSCA1-204ENST00000527413 FAM135AQ9P2D6 1515 aa21.42■■□□□ 1.02
SSSCA1-204ENST00000527413 APLP2Q06481 763 aa21.41■■□□□ 1.02
SSSCA1-204ENST00000527413 PTPN23Q9H3S7 1636 aa21.4■■□□□ 1.02
SSSCA1-204ENST00000527413 KDM5DQ9BY66 1539 aa21.39■■□□□ 1.02
SSSCA1-204ENST00000527413 TSPY4P0CV99 314 aa21.39■■□□□ 1.01
SSSCA1-204ENST00000527413 TSPY10P0CW01 314 aa21.39■■□□□ 1.01
SSSCA1-204ENST00000527413 PPP6R1Q9UPN7 881 aa21.39■■□□□ 1.01
SSSCA1-204ENST00000527413 PTPRKQ15262 1439 aa21.38■■□□□ 1.01
SSSCA1-204ENST00000527413 RNF17Q9BXT8 1623 aaKnown RBP21.38■■□□□ 1.01
SSSCA1-204ENST00000527413 EIF2AK4Q9P2K8 1649 aaKnown RBP21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms