RNA–Protein interactions for RNA: ENST00000525970.5

CSDE1-211, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 503 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-211ENST00000525970 FAM205CA6NFA0 338 aa11.71□□□□□ -0.53
CSDE1-211ENST00000525970 MFRPQ9BY79 579 aa11.71□□□□□ -0.53
CSDE1-211ENST00000525970 ZSWIM6Q9HCJ5 1215 aa11.7□□□□□ -0.54
CSDE1-211ENST00000525970 POTEB3A0JP26 581 aa11.66□□□□□ -0.54
CSDE1-211ENST00000525970 POTEBQ6S5H4 581 aa11.66□□□□□ -0.54
CSDE1-211ENST00000525970 SPNS2Q8IVW8 549 aa11.66□□□□□ -0.54
CSDE1-211ENST00000525970 MMRN1Q13201 1228 aa11.62□□□□□ -0.55
CSDE1-211ENST00000525970 KRTAP3-3Q9BYR6 98 aa11.62□□□□□ -0.55
CSDE1-211ENST00000525970 KRTAP3-2Q9BYR7 98 aa11.62□□□□□ -0.55
CSDE1-211ENST00000525970 ERBB3P21860 1342 aa11.61□□□□□ -0.55
CSDE1-211ENST00000525970 GPR153Q6NV75 609 aa11.59□□□□□ -0.55
CSDE1-211ENST00000525970 KIF3CO14782 793 aa11.56□□□□□ -0.56
CSDE1-211ENST00000525970 HS6ST3Q8IZP7 471 aa11.54□□□□□ -0.56
CSDE1-211ENST00000525970 C2orf72A6NCS6 295 aa11.53□□□□□ -0.56
CSDE1-211ENST00000525970 VARS2Q5ST30 1063 aaKnown RBP11.53□□□□□ -0.56
CSDE1-211ENST00000525970 ARSIQ5FYB1 569 aa11.5□□□□□ -0.57
CSDE1-211ENST00000525970 ZNF687Q8N1G0 1237 aa11.49□□□□□ -0.57
CSDE1-211ENST00000525970 TMC2Q8TDI7 906 aa11.49□□□□□ -0.57
CSDE1-211ENST00000525970 PPP1R37O75864 691 aa11.47□□□□□ -0.57
CSDE1-211ENST00000525970 SLC34A2O95436 690 aa11.47□□□□□ -0.57
CSDE1-211ENST00000525970 ZNF316A6NFI3 1004 aaPredicted RBP11.45□□□□□ -0.58
CSDE1-211ENST00000525970 DNAJC5Q9H3Z4 198 aa11.44□□□□□ -0.58
CSDE1-211ENST00000525970 CHGAP10645 457 aaKnown RBP11.42□□□□□ -0.58
CSDE1-211ENST00000525970 RTN4Q9NQC3 1192 aaKnown RBP11.42□□□□□ -0.58
CSDE1-211ENST00000525970 KHSRPQ92945 711 aaKnown RBP eCLIP11.41□□□□□ -0.583e-7■■■□□ 18.8
CSDE1-211ENST00000525970 AMER1Q5JTC6 1135 aaPredicted RBP11.4□□□□□ -0.58
CSDE1-211ENST00000525970 RYDENQ9NUL5 291 aaKnown RBP11.4□□□□□ -0.58
CSDE1-211ENST00000525970 PCDHGA4Q9Y5G9 962 aa11.4□□□□□ -0.58
CSDE1-211ENST00000525970 NUDT7P0C024 238 aa11.37□□□□□ -0.59
CSDE1-211ENST00000525970 PTGER2P43116 358 aa11.35□□□□□ -0.59
CSDE1-211ENST00000525970 FOXK1P85037 733 aa11.35□□□□□ -0.59
CSDE1-211ENST00000525970 GPHNQ9NQX3 736 aaPredicted RBP11.35□□□□□ -0.59
CSDE1-211ENST00000525970 PBX2P40425 430 aa11.34□□□□□ -0.59
CSDE1-211ENST00000525970 SLC24A1O60721 1099 aa11.32□□□□□ -0.6
CSDE1-211ENST00000525970 NKX1-1Q15270 411 aaPredicted RBP11.32□□□□□ -0.6
CSDE1-211ENST00000525970 PTCD2Q8WV60 388 aaKnown RBP11.32□□□□□ -0.6
CSDE1-211ENST00000525970 LHX6Q9UPM6 363 aa11.32□□□□□ -0.6
CSDE1-211ENST00000525970 PSDA5PKW4 1024 aaPredicted RBP11.31□□□□□ -0.6
CSDE1-211ENST00000525970 RNF166Q96A37 237 aaPredicted RBP11.31□□□□□ -0.6
CSDE1-211ENST00000525970 MYT1LQ9UL68 1186 aa11.31□□□□□ -0.6
CSDE1-211ENST00000525970 PLPP6Q8IY26 295 aa11.3□□□□□ -0.6
CSDE1-211ENST00000525970 LSM11P83369 360 aaKnown RBP eCLIP11.29□□□□□ -0.6
CSDE1-211ENST00000525970 KDM4FA0A1W2PPD8 638 aa11.27□□□□□ -0.61
CSDE1-211ENST00000525970 DSG2Q14126 1118 aa11.27□□□□□ -0.61
CSDE1-211ENST00000525970 ANKRD13DQ6ZTN6 518 aa11.27□□□□□ -0.61
CSDE1-211ENST00000525970 TBC1D12O60347 775 aa11.25□□□□□ -0.61
CSDE1-211ENST00000525970 CRISPLD2Q9H0B8 497 aa11.22□□□□□ -0.61
CSDE1-211ENST00000525970 POTEEQ6S8J3 1075 aa11.21□□□□□ -0.61
CSDE1-211ENST00000525970 ARHGAP33O14559 1287 aa11.19□□□□□ -0.62
CSDE1-211ENST00000525970 GTPBP6O43824 516 aaPredicted RBP11.18□□□□□ -0.62
CSDE1-211ENST00000525970 AXIN2Q9Y2T1 843 aa11.18□□□□□ -0.62
CSDE1-211ENST00000525970 PDE4AP27815 886 aa11.17□□□□□ -0.62
CSDE1-211ENST00000525970 PPP4R3BQ5MIZ7 849 aa11.17□□□□□ -0.62
CSDE1-211ENST00000525970 OXER1Q8TDS5 423 aa11.17□□□□□ -0.62
CSDE1-211ENST00000525970 PPP1R15BQ5SWA1 713 aa11.16□□□□□ -0.62
CSDE1-211ENST00000525970 NCKAP5LQ9HCH0 1330 aa11.13□□□□□ -0.63
CSDE1-211ENST00000525970 TK2O00142 265 aa11.13□□□□□ -0.63
CSDE1-211ENST00000525970 DCAF8L2P0C7V8 631 aa11.12□□□□□ -0.63
CSDE1-211ENST00000525970 ADGRD1Q6QNK2 874 aa11.12□□□□□ -0.63
CSDE1-211ENST00000525970 UPF1Q92900 1129 aaKnown RBP eCLIP11.1□□□□□ -0.63
CSDE1-211ENST00000525970 KCNH8Q96L42 1107 aa11.09□□□□□ -0.63
CSDE1-211ENST00000525970 MFSD10Q14728 455 aa11.07□□□□□ -0.64
CSDE1-211ENST00000525970 DDX27Q96GQ7 796 aaKnown RBP11.07□□□□□ -0.64
CSDE1-211ENST00000525970 PSEN2P49810 448 aa11.06□□□□□ -0.64
CSDE1-211ENST00000525970 DMRTA1Q5VZB9 504 aa11.06□□□□□ -0.64
CSDE1-211ENST00000525970 LARP6Q9BRS8 491 aaKnown RBP11.06□□□□□ -0.64
CSDE1-211ENST00000525970 HRO43593 1189 aa11.04□□□□□ -0.64
CSDE1-211ENST00000525970 ANO8Q9HCE9 1232 aaPredicted RBP11.04□□□□□ -0.64
CSDE1-211ENST00000525970 ZNF454Q8N9F8 522 aa11.03□□□□□ -0.64
CSDE1-211ENST00000525970 FOSBP53539 338 aa11.02□□□□□ -0.65
CSDE1-211ENST00000525970 KCNK17Q96T54 332 aa11.02□□□□□ -0.65
CSDE1-211ENST00000525970 BCL2L12Q9HB09 334 aa11.02□□□□□ -0.65
CSDE1-211ENST00000525970 HCSTQ9UBK5 93 aa11.02□□□□□ -0.65
CSDE1-211ENST00000525970 EVI5O60447 810 aa11□□□□□ -0.65
CSDE1-211ENST00000525970 JPH4Q96JJ6 628 aa11□□□□□ -0.65
CSDE1-211ENST00000525970 SLC4A5Q9BY07 1137 aa11□□□□□ -0.65
CSDE1-211ENST00000525970 STAC3Q96MF2 364 aa10.98□□□□□ -0.65
CSDE1-211ENST00000525970 MAP3K9P80192 1104 aa10.97□□□□□ -0.65
CSDE1-211ENST00000525970 VPS9D1Q9Y2B5 631 aa10.97□□□□□ -0.65
CSDE1-211ENST00000525970 PTPREP23469 700 aa10.96□□□□□ -0.65
CSDE1-211ENST00000525970 CADPS2Q86UW7 1296 aa10.94□□□□□ -0.66
CSDE1-211ENST00000525970 ZDHHC16Q969W1 377 aa10.94□□□□□ -0.66
CSDE1-211ENST00000525970 EMILIN3Q9NT22 766 aa10.94□□□□□ -0.66
CSDE1-211ENST00000525970 BBXQ8WY36 941 aaPredicted RBP10.93□□□□□ -0.66
CSDE1-211ENST00000525970 KCTD12Q96CX2 325 aaKnown RBP10.9□□□□□ -0.66
CSDE1-211ENST00000525970 ADAM33Q9BZ11 813 aa10.9□□□□□ -0.66
CSDE1-211ENST00000525970 ZBED2Q9BTP6 218 aa10.89□□□□□ -0.67
CSDE1-211ENST00000525970 PLA2G2EQ9NZK7 142 aa10.89□□□□□ -0.67
CSDE1-211ENST00000525970 CAMK2BQ13554 666 aa10.88□□□□□ -0.67
CSDE1-211ENST00000525970 BHMG1C9JSJ3 638 aaPredicted RBP10.87□□□□□ -0.67
CSDE1-211ENST00000525970 FBXW7Q969H0 707 aa10.86□□□□□ -0.67
CSDE1-211ENST00000525970 PCDHGA10Q9Y5H3 936 aa10.86□□□□□ -0.67
CSDE1-211ENST00000525970 PHF14O94880 888 aa10.85□□□□□ -0.67
CSDE1-211ENST00000525970 TYW1BQ6NUM6 668 aa10.85□□□□□ -0.67
CSDE1-211ENST00000525970 PPP1R3GB7ZBB8 358 aa10.84□□□□□ -0.67
CSDE1-211ENST00000525970 NBPF3Q9H094 633 aa10.84□□□□□ -0.67
CSDE1-211ENST00000525970 MRPL50Q8N5N7 158 aaKnown RBP10.82□□□□□ -0.68
CSDE1-211ENST00000525970 GOLGA8CPA6NN73 597 aa10.81□□□□□ -0.68
CSDE1-211ENST00000525970 EPAS1Q99814 870 aa10.81□□□□□ -0.68
CSDE1-211ENST00000525970 SPRYD3Q8NCJ5 442 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms