RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 CCDC61Q9Y6R9 512 aa9.26□□□□□ -0.93
USP47-204ENST00000525078 SLC39A7Q92504 469 aa9.25□□□□□ -0.93
USP47-204ENST00000525078 AK7Q96M32 723 aa9.24□□□□□ -0.93
USP47-204ENST00000525078 BARGINQ6ZT62 677 aa9.23□□□□□ -0.93
USP47-204ENST00000525078 KIF12Q96FN5 646 aa9.23□□□□□ -0.93
USP47-204ENST00000525078 C1orf115Q9H7X2 142 aa9.23□□□□□ -0.93
USP47-204ENST00000525078 ARID3CA6NKF2 412 aa9.22□□□□□ -0.93
USP47-204ENST00000525078 APBB1O00213 710 aa9.22□□□□□ -0.93
USP47-204ENST00000525078 KRI1Q8N9T8 703 aaKnown RBP9.22□□□□□ -0.93
USP47-204ENST00000525078 ATN1P54259 1190 aaPredicted RBP9.21□□□□□ -0.94
USP47-204ENST00000525078 PYGBP11216 843 aa9.2□□□□□ -0.94
USP47-204ENST00000525078 KDM4CQ9H3R0 1056 aa9.2□□□□□ -0.94
USP47-204ENST00000525078 TRPC6Q9Y210 931 aa9.18□□□□□ -0.94
USP47-204ENST00000525078 POTEFA5A3E0 1075 aa9.16□□□□□ -0.94
USP47-204ENST00000525078 MAMSTRQ6ZN01 415 aa9.16□□□□□ -0.94
USP47-204ENST00000525078 BMP2KQ9NSY1 1161 aaPredicted RBP9.16□□□□□ -0.94
USP47-204ENST00000525078 MAP3K13O43283 966 aa9.15□□□□□ -0.94
USP47-204ENST00000525078 RASEFQ8IZ41 740 aa9.15□□□□□ -0.94
USP47-204ENST00000525078 MKRN3Q13064 507 aaKnown RBP9.14□□□□□ -0.95
USP47-204ENST00000525078 LCE2DQ5TA82 110 aaPredicted RBP9.13□□□□□ -0.95
USP47-204ENST00000525078 PCDH10Q9P2E7 1040 aa9.12□□□□□ -0.95
USP47-204ENST00000525078 GPIHBP1Q8IV16 184 aa9.11□□□□□ -0.95
USP47-204ENST00000525078 TIE1P35590 1138 aa9.1□□□□□ -0.95
USP47-204ENST00000525078 FLIIQ13045 1269 aa9.1□□□□□ -0.95
USP47-204ENST00000525078 PDE4DQ08499 809 aa9.09□□□□□ -0.95
USP47-204ENST00000525078 ZNF316A6NFI3 1004 aaPredicted RBP9.08□□□□□ -0.96
USP47-204ENST00000525078 NECTIN2Q92692 538 aa9.08□□□□□ -0.96
USP47-204ENST00000525078 FAM163AQ96GL9 167 aaPredicted RBP9.08□□□□□ -0.96
USP47-204ENST00000525078 SCUBE2Q9NQ36 999 aa9.08□□□□□ -0.96
USP47-204ENST00000525078 TRIM66O15016 1216 aa9.07□□□□□ -0.96
USP47-204ENST00000525078 MFRPQ9BY79 579 aa9.07□□□□□ -0.96
USP47-204ENST00000525078 COLQQ9Y215 455 aaPredicted RBP9.07□□□□□ -0.96
USP47-204ENST00000525078 TTLL13PA6NNM8 815 aa9.06□□□□□ -0.96
USP47-204ENST00000525078 RBM26Q5T8P6 1007 aaKnown RBP9.06□□□□□ -0.96
USP47-204ENST00000525078 ZNF467Q7Z7K2 595 aaPredicted RBP9.06□□□□□ -0.96
USP47-204ENST00000525078 CCDC82Q8N4S0 544 aa9.06□□□□□ -0.96
USP47-204ENST00000525078 PDAP1Q13442 181 aaKnown RBP9.05□□□□□ -0.96
USP47-204ENST00000525078 KCTD17Q8N5Z5 321 aa9.04□□□□□ -0.96
USP47-204ENST00000525078 FAM117AQ9C073 453 aa9.04□□□□□ -0.96
USP47-204ENST00000525078 PPP1R37O75864 691 aa9.03□□□□□ -0.96
USP47-204ENST00000525078 LARP6Q9BRS8 491 aaKnown RBP9.03□□□□□ -0.96
USP47-204ENST00000525078 SEC24BO95487 1268 aa9□□□□□ -0.97
USP47-204ENST00000525078 PCDHB13Q9Y5F0 798 aa9□□□□□ -0.97
USP47-204ENST00000525078 PDE4AP27815 886 aa8.99□□□□□ -0.97
USP47-204ENST00000525078 DDRGK1Q96HY6 314 aa8.99□□□□□ -0.97
USP47-204ENST00000525078 TRIM35Q9UPQ4 493 aa8.99□□□□□ -0.97
USP47-204ENST00000525078 RAD21O60216 631 aa8.98□□□□□ -0.97
USP47-204ENST00000525078 TRAK2O60296 914 aa8.98□□□□□ -0.97
USP47-204ENST00000525078 IER5LQ5T953 404 aa8.98□□□□□ -0.97
USP47-204ENST00000525078 NLRP6P59044 892 aa8.97□□□□□ -0.97
USP47-204ENST00000525078 IFNL1Q8IU54 200 aa8.97□□□□□ -0.97
USP47-204ENST00000525078 ARIH1Q9Y4X5 557 aaPredicted RBP8.97□□□□□ -0.97
USP47-204ENST00000525078 A6NJR5 290 aa8.96□□□□□ -0.98
USP47-204ENST00000525078 MLLT3P42568 568 aaPredicted RBP8.96□□□□□ -0.98
USP47-204ENST00000525078 AEBP1Q8IUX7 1158 aa8.96□□□□□ -0.98
USP47-204ENST00000525078 CLUAP1Q96AJ1 413 aa8.96□□□□□ -0.98
USP47-204ENST00000525078 NCKAP5LQ9HCH0 1330 aa8.96□□□□□ -0.98
USP47-204ENST00000525078 PSEN1P49768 467 aa8.95□□□□□ -0.98
USP47-204ENST00000525078 DDX27Q96GQ7 796 aaKnown RBP8.95□□□□□ -0.98
USP47-204ENST00000525078 PCDHB8Q9UN66 801 aa8.95□□□□□ -0.98
USP47-204ENST00000525078 PLEKHG3A1L390 1219 aa8.94□□□□□ -0.98
USP47-204ENST00000525078 TRAIPQ9BWF2 469 aa8.94□□□□□ -0.98
USP47-204ENST00000525078 MFSD10Q14728 455 aa8.92□□□□□ -0.98
USP47-204ENST00000525078 FBXO22Q8NEZ5 403 aa8.91□□□□□ -0.98
USP47-204ENST00000525078 TMEM106CQ9BVX2 250 aa8.91□□□□□ -0.98
USP47-204ENST00000525078 CCDC97Q96F63 343 aaPredicted RBP8.9□□□□□ -0.98
USP47-204ENST00000525078 PHF8Q9UPP1 1060 aa8.9□□□□□ -0.98
USP47-204ENST00000525078 SOX12O15370 315 aa8.89□□□□□ -0.99
USP47-204ENST00000525078 TMCO4Q5TGY1 634 aa8.89□□□□□ -0.99
USP47-204ENST00000525078 EFCAB3Q8N7B9 438 aa8.89□□□□□ -0.99
USP47-204ENST00000525078 ZNF777Q9ULD5 760 aaPredicted RBP8.89□□□□□ -0.99
USP47-204ENST00000525078 ONECUT3O60422 494 aaPredicted RBP8.88□□□□□ -0.99
USP47-204ENST00000525078 SLAIN1Q8ND83 568 aa8.88□□□□□ -0.99
USP47-204ENST00000525078 IRX5P78411 483 aaPredicted RBP8.87□□□□□ -0.99
USP47-204ENST00000525078 CAMK2BQ13554 666 aa8.87□□□□□ -0.99
USP47-204ENST00000525078 CDAN1Q8IWY9 1227 aa8.87□□□□□ -0.99
USP47-204ENST00000525078 PCMTD1Q96MG8 357 aaPredicted RBP8.87□□□□□ -0.99
USP47-204ENST00000525078 SERPINA10Q9UK55 444 aa8.87□□□□□ -0.99
USP47-204ENST00000525078 MINK1Q8N4C8 1332 aaPredicted RBP8.86□□□□□ -0.99
USP47-204ENST00000525078 LOC105371045A0A1W2PR82 267 aa8.86□□□□□ -0.99
USP47-204ENST00000525078 CRISPLD2Q9H0B8 497 aa8.86□□□□□ -0.99
USP47-204ENST00000525078 GOPCQ9HD26 462 aa8.86□□□□□ -0.99
USP47-204ENST00000525078 CABP2Q9NPB3 220 aa8.86□□□□□ -0.99
USP47-204ENST00000525078 MTMR7Q9Y216 660 aa8.86□□□□□ -0.99
USP47-204ENST00000525078 SHROOM4Q9ULL8 1493 aa8.85□□□□□ -0.99
USP47-204ENST00000525078 ST18O60284 1047 aa8.85□□□□□ -0.99
USP47-204ENST00000525078 PLCG2P16885 1265 aa8.85□□□□□ -0.99
USP47-204ENST00000525078 RGS22Q8NE09 1264 aa8.85□□□□□ -0.99
USP47-204ENST00000525078 PROSER2Q86WR7 435 aaPredicted RBP8.84□□□□□ -0.99
USP47-204ENST00000525078 PARP9Q8IXQ6 854 aa8.84□□□□□ -0.99
USP47-204ENST00000525078 CCDC102AQ96A19 550 aa8.83□□□□□ -1
USP47-204ENST00000525078 GZF1Q9H116 711 aaPredicted RBP8.83□□□□□ -1
USP47-204ENST00000525078 RBM25P49756 843 aaKnown RBP8.82□□□□□ -1
USP47-204ENST00000525078 AMHR2Q16671 573 aa8.82□□□□□ -1
USP47-204ENST00000525078 OCEL1Q9H607 264 aa8.82□□□□□ -1
USP47-204ENST00000525078 MFAP1P55081 439 aaKnown RBP8.81□□□□□ -1
USP47-204ENST00000525078 MAP2K5Q13163 448 aa8.81□□□□□ -1
USP47-204ENST00000525078 TTLL12Q14166 644 aaPredicted RBP8.81□□□□□ -1
USP47-204ENST00000525078 MCM6Q14566 821 aa8.81□□□□□ -1
USP47-204ENST00000525078 IRF6O14896 467 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms