RNA–Protein interactions for RNA: ENST00000523655.1

SREK1-213, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, human

TSL 5

Gene SREK1, Length 606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREK1-213	ENST00000523655	C2orf72	A6NCS6	295 aa		12.45	□□□□□ -0.42
SREK1-213	ENST00000523655	GTPBP6	O43824	516 aa	Predicted RBP	12.43	□□□□□ -0.42
SREK1-213	ENST00000523655	KIF3C	O14782	793 aa		12.42	□□□□□ -0.42
SREK1-213	ENST00000523655	POTEB3	A0JP26	581 aa		12.38	□□□□□ -0.43
SREK1-213	ENST00000523655	POTEB	Q6S5H4	581 aa		12.38	□□□□□ -0.43
SREK1-213	ENST00000523655	ZNF710	Q8N1W2	664 aa		12.38	□□□□□ -0.43
SREK1-213	ENST00000523655	EMP3	P54852	163 aa		12.36	□□□□□ -0.43
SREK1-213	ENST00000523655	DOK7	Q18PE1	504 aa		12.36	□□□□□ -0.43
SREK1-213	ENST00000523655	TMC2	Q8TDI7	906 aa		12.36	□□□□□ -0.43
SREK1-213	ENST00000523655	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.36	□□□□□ -0.43	3e-10	■□□□□ 10.5
SREK1-213	ENST00000523655	CDAN1	Q8IWY9	1227 aa		12.34	□□□□□ -0.43
SREK1-213	ENST00000523655	FAM205C	A6NFA0	338 aa		12.33	□□□□□ -0.44
SREK1-213	ENST00000523655	ARSI	Q5FYB1	569 aa		12.32	□□□□□ -0.44
SREK1-213	ENST00000523655	HOXB1	P14653	301 aa	Predicted RBP	12.31	□□□□□ -0.44
SREK1-213	ENST00000523655	GPR153	Q6NV75	609 aa		12.3	□□□□□ -0.44
SREK1-213	ENST00000523655	PLSCR2	Q9NRY7	297 aa		12.29	□□□□□ -0.44
SREK1-213	ENST00000523655	HS3ST6	Q96QI5	342 aa		12.28	□□□□□ -0.44
SREK1-213	ENST00000523655	RIMBP2	O15034	1052 aa		12.27	□□□□□ -0.45
SREK1-213	ENST00000523655	DSG2	Q14126	1118 aa		12.27	□□□□□ -0.45
SREK1-213	ENST00000523655	RYDEN	Q9NUL5	291 aa	Known RBP	12.27	□□□□□ -0.45
SREK1-213	ENST00000523655	BBX	Q8WY36	941 aa	Predicted RBP	12.26	□□□□□ -0.45
SREK1-213	ENST00000523655	GPHN	Q9NQX3	736 aa	Predicted RBP	12.26	□□□□□ -0.45
SREK1-213	ENST00000523655	CADPS2	Q86UW7	1296 aa		12.25	□□□□□ -0.45
SREK1-213	ENST00000523655	PLPP6	Q8IY26	295 aa		12.25	□□□□□ -0.45
SREK1-213	ENST00000523655	NCKAP5L	Q9HCH0	1330 aa		12.24	□□□□□ -0.45
SREK1-213	ENST00000523655	ERBB3	P21860	1342 aa		12.22	□□□□□ -0.45
SREK1-213	ENST00000523655	FOXK1	P85037	733 aa		12.22	□□□□□ -0.45
SREK1-213	ENST00000523655	CRISPLD2	Q9H0B8	497 aa		12.22	□□□□□ -0.45
SREK1-213	ENST00000523655	ZSWIM6	Q9HCJ5	1215 aa		12.21	□□□□□ -0.45
SREK1-213	ENST00000523655	PCDH10	Q9P2E7	1040 aa		12.21	□□□□□ -0.45
SREK1-213	ENST00000523655	NUDT7	P0C024	238 aa		12.2	□□□□□ -0.46
SREK1-213	ENST00000523655	VARS2	Q5ST30	1063 aa	Known RBP	12.2	□□□□□ -0.46
SREK1-213	ENST00000523655	PCDHGA4	Q9Y5G9	962 aa		12.2	□□□□□ -0.46
SREK1-213	ENST00000523655	LARP6	Q9BRS8	491 aa	Known RBP	12.16	□□□□□ -0.46
SREK1-213	ENST00000523655	KRTAP3-3	Q9BYR6	98 aa		12.16	□□□□□ -0.46
SREK1-213	ENST00000523655	KRTAP3-2	Q9BYR7	98 aa		12.16	□□□□□ -0.46
SREK1-213	ENST00000523655	SLC34A2	O95436	690 aa		12.15	□□□□□ -0.46
SREK1-213	ENST00000523655	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.15	□□□□□ -0.46
SREK1-213	ENST00000523655	CFAP44	Q96MT7	982 aa		12.15	□□□□□ -0.46
SREK1-213	ENST00000523655	PPP1R15B	Q5SWA1	713 aa		12.14	□□□□□ -0.47
SREK1-213	ENST00000523655	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.14	□□□□□ -0.47
SREK1-213	ENST00000523655	PDE4A	P27815	886 aa		12.13	□□□□□ -0.47
SREK1-213	ENST00000523655	SPRYD3	Q8NCJ5	442 aa		12.13	□□□□□ -0.47
SREK1-213	ENST00000523655	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.12	□□□□□ -0.47
SREK1-213	ENST00000523655	LHX6	Q9UPM6	363 aa		12.12	□□□□□ -0.47
SREK1-213	ENST00000523655	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.11	□□□□□ -0.47
SREK1-213	ENST00000523655	PTCD2	Q8WV60	388 aa	Known RBP	12.1	□□□□□ -0.47
SREK1-213	ENST00000523655	KDM4F	A0A1W2PPD8	638 aa		12.07	□□□□□ -0.48
SREK1-213	ENST00000523655	DDX27	Q96GQ7	796 aa	Known RBP	12.07	□□□□□ -0.48
SREK1-213	ENST00000523655	MFSD10	Q14728	455 aa		12.05	□□□□□ -0.48
SREK1-213	ENST00000523655	OXER1	Q8TDS5	423 aa		12.05	□□□□□ -0.48
SREK1-213	ENST00000523655	ZNF687	Q8N1G0	1237 aa		12.04	□□□□□ -0.48
SREK1-213	ENST00000523655	SPNS2	Q8IVW8	549 aa		12.03	□□□□□ -0.48
SREK1-213	ENST00000523655	EMILIN3	Q9NT22	766 aa		12.02	□□□□□ -0.49
SREK1-213	ENST00000523655	POTEE	Q6S8J3	1075 aa		12.01	□□□□□ -0.49
SREK1-213	ENST00000523655	AXIN2	Q9Y2T1	843 aa		12.01	□□□□□ -0.49
SREK1-213	ENST00000523655	TBC1D12	O60347	775 aa		11.98	□□□□□ -0.49
SREK1-213	ENST00000523655	MMRN1	Q13201	1228 aa		11.94	□□□□□ -0.5
SREK1-213	ENST00000523655	TSHZ2	Q9NRE2	1034 aa		11.94	□□□□□ -0.5
SREK1-213	ENST00000523655	EVI5	O60447	810 aa		11.92	□□□□□ -0.5
SREK1-213	ENST00000523655	MAP3K9	P80192	1104 aa		11.92	□□□□□ -0.5
SREK1-213	ENST00000523655	ANKRD13D	Q6ZTN6	518 aa		11.92	□□□□□ -0.5
SREK1-213	ENST00000523655	DPYSL4	O14531	572 aa		11.89	□□□□□ -0.51
SREK1-213	ENST00000523655	PSEN2	P49810	448 aa		11.89	□□□□□ -0.51
SREK1-213	ENST00000523655	CAMK2B	Q13554	666 aa		11.88	□□□□□ -0.51
SREK1-213	ENST00000523655	ZNF454	Q8N9F8	522 aa		11.88	□□□□□ -0.51
SREK1-213	ENST00000523655	LSM11	P83369	360 aa	Known RBP eCLIP	11.86	□□□□□ -0.51
SREK1-213	ENST00000523655	DMRTA1	Q5VZB9	504 aa		11.86	□□□□□ -0.51
SREK1-213	ENST00000523655	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.86	□□□□□ -0.51
SREK1-213	ENST00000523655	PPP4R3B	Q5MIZ7	849 aa		11.85	□□□□□ -0.51
SREK1-213	ENST00000523655	PSD	A5PKW4	1024 aa	Predicted RBP	11.83	□□□□□ -0.52
SREK1-213	ENST00000523655	FOSB	P53539	338 aa		11.83	□□□□□ -0.52
SREK1-213	ENST00000523655	ARHGAP33	O14559	1287 aa		11.82	□□□□□ -0.52
SREK1-213	ENST00000523655	KCNK17	Q96T54	332 aa		11.81	□□□□□ -0.52
SREK1-213	ENST00000523655	PBX2	P40425	430 aa		11.8	□□□□□ -0.52
SREK1-213	ENST00000523655	ADAM33	Q9BZ11	813 aa		11.79	□□□□□ -0.52
SREK1-213	ENST00000523655	WDR70	Q9NW82	654 aa		11.79	□□□□□ -0.52
SREK1-213	ENST00000523655	E2F4	Q16254	413 aa		11.78	□□□□□ -0.52
SREK1-213	ENST00000523655	PCDHGA10	Q9Y5H3	936 aa		11.78	□□□□□ -0.52
SREK1-213	ENST00000523655	JPH4	Q96JJ6	628 aa		11.77	□□□□□ -0.53
SREK1-213	ENST00000523655	DDX12P	Q92771	950 aa		11.76	□□□□□ -0.53
SREK1-213	ENST00000523655	ZDHHC16	Q969W1	377 aa		11.75	□□□□□ -0.53
SREK1-213	ENST00000523655	MYT1L	Q9UL68	1186 aa		11.75	□□□□□ -0.53
SREK1-213	ENST00000523655	ADGRD1	Q6QNK2	874 aa		11.74	□□□□□ -0.53
SREK1-213	ENST00000523655	PLCB2	Q00722	1185 aa		11.73	□□□□□ -0.53
SREK1-213	ENST00000523655	BCL2L12	Q9HB09	334 aa		11.73	□□□□□ -0.53
SREK1-213	ENST00000523655	RNF166	Q96A37	237 aa	Predicted RBP	11.72	□□□□□ -0.53
SREK1-213	ENST00000523655	RBM33	Q96EV2	1170 aa	Known RBP	11.69	□□□□□ -0.54
SREK1-213	ENST00000523655	COL9A1	P20849	921 aa		11.68	□□□□□ -0.54
SREK1-213	ENST00000523655	PTPRE	P23469	700 aa		11.68	□□□□□ -0.54
SREK1-213	ENST00000523655	PDIA6	Q15084	440 aa		11.68	□□□□□ -0.54
SREK1-213	ENST00000523655	HR	O43593	1189 aa		11.67	□□□□□ -0.54
SREK1-213	ENST00000523655	PHF14	O94880	888 aa		11.67	□□□□□ -0.54
SREK1-213	ENST00000523655	TYW1B	Q6NUM6	668 aa		11.67	□□□□□ -0.54
SREK1-213	ENST00000523655	VPS9D1	Q9Y2B5	631 aa		11.67	□□□□□ -0.54
SREK1-213	ENST00000523655	PRIM1	P49642	420 aa	Known RBP	11.66	□□□□□ -0.54
SREK1-213	ENST00000523655	GRXCR2	A6NFK2	248 aa		11.64	□□□□□ -0.55
SREK1-213	ENST00000523655	TK2	O00142	265 aa		11.64	□□□□□ -0.55
SREK1-213	ENST00000523655	PTGER2	P43116	358 aa		11.64	□□□□□ -0.55
SREK1-213	ENST00000523655	NBR1	Q14596	966 aa		11.64	□□□□□ -0.55

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