RNA–Protein interactions for RNA: ENST00000522987.1

MRPS28-209, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 3

Gene MRPS28, Length 487 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-209ENST00000522987 ZMYM4Q5VZL5 1548 aa25.42■■□□□ 1.66
MRPS28-209ENST00000522987 PLCH2O75038 1416 aa25.4■■□□□ 1.66
MRPS28-209ENST00000522987 SCAPERQ9BY12 1400 aa25.4■■□□□ 1.66
MRPS28-209ENST00000522987 MLECQ14165 292 aa25.38■■□□□ 1.65
MRPS28-209ENST00000522987 POGZQ7Z3K3 1410 aa25.36■■□□□ 1.65
MRPS28-209ENST00000522987 FER1L4A9Z1Z3 1794 aa25.35■■□□□ 1.65
MRPS28-209ENST00000522987 PCF11O94913 1555 aaKnown RBP25.35■■□□□ 1.65
MRPS28-209ENST00000522987 CDK11AQ9UQ88 783 aaPredicted RBP25.34■■□□□ 1.65
MRPS28-209ENST00000522987 ARHGAP5Q13017 1502 aa25.32■■□□□ 1.64
MRPS28-209ENST00000522987 TROQ12816 1431 aaPredicted RBP25.32■■□□□ 1.64
MRPS28-209ENST00000522987 CDC42BPBQ9Y5S2 1711 aa25.32■■□□□ 1.64
MRPS28-209ENST00000522987 EFCAB2Q5VUJ9 269 aa25.31■■□□□ 1.64
MRPS28-209ENST00000522987 CLIP1P30622 1438 aa25.29■■□□□ 1.64
MRPS28-209ENST00000522987 MAGI2Q86UL8 1455 aa25.28■■□□□ 1.64
MRPS28-209ENST00000522987 LMTK3Q96Q04 1460 aa25.28■■□□□ 1.64
MRPS28-209ENST00000522987 MYT1LQ9UL68 1186 aa25.25■■□□□ 1.63
MRPS28-209ENST00000522987 HSPA2P54652 639 aa25.24■■□□□ 1.63
MRPS28-209ENST00000522987 ATP10AO60312 1499 aa25.23■■□□□ 1.63
MRPS28-209ENST00000522987 AFAP1Q8N556 730 aa25.23■■□□□ 1.63
MRPS28-209ENST00000522987 PREX2Q70Z35 1606 aa25.22■■□□□ 1.63
MRPS28-209ENST00000522987 C9orf84Q5VXU9 1444 aa25.2■■□□□ 1.63
MRPS28-209ENST00000522987 CASKIN1Q8WXD9 1431 aa25.2■■□□□ 1.63
MRPS28-209ENST00000522987 CDC42BPAQ5VT25 1732 aa25.2■■□□□ 1.63
MRPS28-209ENST00000522987 ZNF518AQ6AHZ1 1483 aa25.2■■□□□ 1.62
MRPS28-209ENST00000522987 CCDC18Q5T9S5 1454 aa25.18■■□□□ 1.62
MRPS28-209ENST00000522987 KDM5CP41229 1560 aa25.18■■□□□ 1.62
MRPS28-209ENST00000522987 ITSN2Q9NZM3 1697 aa25.17■■□□□ 1.62
MRPS28-209ENST00000522987 DIP2CQ9Y2E4 1556 aa25.17■■□□□ 1.62
MRPS28-209ENST00000522987 ABCA6Q8N139 1617 aa25.16■■□□□ 1.62
MRPS28-209ENST00000522987 ARHGEF12Q9NZN5 1544 aa25.16■■□□□ 1.62
MRPS28-209ENST00000522987 CEBPAP49715 358 aaPredicted RBP25.14■■□□□ 1.62
MRPS28-209ENST00000522987 ABCC1P33527 1531 aa25.13■■□□□ 1.61
MRPS28-209ENST00000522987 TRAPPC8Q9Y2L5 1435 aa25.12■■□□□ 1.61
MRPS28-209ENST00000522987 FYCO1Q9BQS8 1478 aa25.12■■□□□ 1.61
MRPS28-209ENST00000522987 ZNF777Q9ULD5 760 aaPredicted RBP25.09■■□□□ 1.61
MRPS28-209ENST00000522987 PREX1Q8TCU6 1659 aa25.09■■□□□ 1.61
MRPS28-209ENST00000522987 KIDINS220Q9ULH0 1771 aa25.07■■□□□ 1.6
MRPS28-209ENST00000522987 FBXO41Q8TF61 875 aa25.06■■□□□ 1.6
MRPS28-209ENST00000522987 SAMD9LQ8IVG5 1584 aa25.05■■□□□ 1.6
MRPS28-209ENST00000522987 MLH3Q9UHC1 1453 aa25.03■■□□□ 1.6
MRPS28-209ENST00000522987 C3P01024 1663 aa25.03■■□□□ 1.6
MRPS28-209ENST00000522987 SYCP2Q9BX26 1530 aa25.02■■□□□ 1.6
MRPS28-209ENST00000522987 REREQ9P2R6 1566 aa25.01■■□□□ 1.59
MRPS28-209ENST00000522987 SUPT6HQ7KZ85 1726 aaKnown RBP24.99■■□□□ 1.59
MRPS28-209ENST00000522987 GPATCH8Q9UKJ3 1502 aaKnown RBP24.98■■□□□ 1.59
MRPS28-209ENST00000522987 HNRNPMP52272 730 aaKnown RBP eCLIP24.97■■□□□ 1.59
MRPS28-209ENST00000522987 SETD1BQ9UPS6 1966 aaKnown RBP24.96■■□□□ 1.59
MRPS28-209ENST00000522987 STRCQ7RTU9 1775 aa24.95■■□□□ 1.59
MRPS28-209ENST00000522987 AGLP35573 1532 aa24.93■■□□□ 1.58
MRPS28-209ENST00000522987 ESF1Q9H501 851 aaKnown RBP24.93■■□□□ 1.58
MRPS28-209ENST00000522987 MTUS2Q5JR59 1369 aa24.92■■□□□ 1.58
MRPS28-209ENST00000522987 UHRF1BP1Q6BDS2 1440 aa24.91■■□□□ 1.58
MRPS28-209ENST00000522987 CCNB3Q8WWL7 1395 aa24.91■■□□□ 1.58
MRPS28-209ENST00000522987 CFDP1Q9UEE9 299 aaPredicted RBP24.9■■□□□ 1.58
MRPS28-209ENST00000522987 SPAG9O60271 1321 aaKnown RBP24.89■■□□□ 1.58
MRPS28-209ENST00000522987 ATP7AQ04656 1500 aa24.88■■□□□ 1.57
MRPS28-209ENST00000522987 TIAM1Q13009 1591 aa24.86■■□□□ 1.57
MRPS28-209ENST00000522987 INO80Q9ULG1 1556 aaPredicted RBP24.86■■□□□ 1.57
MRPS28-209ENST00000522987 CLTCQ00610 1675 aaKnown RBP24.85■■□□□ 1.57
MRPS28-209ENST00000522987 CEP162Q5TB80 1403 aa24.85■■□□□ 1.57
MRPS28-209ENST00000522987 CERKQ8TCT0 537 aa24.84■■□□□ 1.57
MRPS28-209ENST00000522987 ZNF644Q9H582 1327 aaPredicted RBP24.84■■□□□ 1.57
MRPS28-209ENST00000522987 EHBP1L1Q8N3D4 1523 aa24.82■■□□□ 1.56
MRPS28-209ENST00000522987 PLEKHH2Q8IVE3 1493 aa24.81■■□□□ 1.56
MRPS28-209ENST00000522987 MROH2AA6NES4 1674 aa24.81■■□□□ 1.56
MRPS28-209ENST00000522987 KIAA1107Q9UPP5 1409 aa24.78■■□□□ 1.56
MRPS28-209ENST00000522987 A2MP01023 1474 aa24.78■■□□□ 1.56
MRPS28-209ENST00000522987 ADGBQ8N7X0 1667 aa24.78■■□□□ 1.56
MRPS28-209ENST00000522987 CNTLNQ9NXG0 1405 aa24.78■■□□□ 1.56
MRPS28-209ENST00000522987 PLXNC1O60486 1568 aa24.77■■□□□ 1.56
MRPS28-209ENST00000522987 GGT6Q6P531 493 aa24.75■■□□□ 1.55
MRPS28-209ENST00000522987 ZMYM3Q14202 1370 aa24.73■■□□□ 1.55
MRPS28-209ENST00000522987 DMRT2Q9Y5R5 561 aa24.71■■□□□ 1.55
MRPS28-209ENST00000522987 CAMSAP1Q5T5Y3 1602 aa24.7■■□□□ 1.54
MRPS28-209ENST00000522987 MYO3AQ8NEV4 1616 aa24.69■■□□□ 1.54
MRPS28-209ENST00000522987 LOC105371045A0A1W2PR82 267 aa24.69■■□□□ 1.54
MRPS28-209ENST00000522987 MBD5Q9P267 1494 aa24.69■■□□□ 1.54
MRPS28-209ENST00000522987 NCOA2Q15596 1464 aa24.68■■□□□ 1.54
MRPS28-209ENST00000522987 CAMSAP2Q08AD1 1489 aa24.66■■□□□ 1.54
MRPS28-209ENST00000522987 NCOA1Q15788 1441 aa24.66■■□□□ 1.54
MRPS28-209ENST00000522987 PTPRTO14522 1441 aa24.65■■□□□ 1.54
MRPS28-209ENST00000522987 NPATQ14207 1427 aa24.65■■□□□ 1.54
MRPS28-209ENST00000522987 ZNF142P52746 1687 aaPredicted RBP24.63■■□□□ 1.53
MRPS28-209ENST00000522987 NCKAP5LQ9HCH0 1330 aa24.62■■□□□ 1.53
MRPS28-209ENST00000522987 PTPRKQ15262 1439 aa24.61■■□□□ 1.53
MRPS28-209ENST00000522987 CEP170BQ9Y4F5 1589 aaPredicted RBP24.6■■□□□ 1.53
MRPS28-209ENST00000522987 CCDC141Q6ZP82 1450 aa24.6■■□□□ 1.53
MRPS28-209ENST00000522987 LTBP4Q8N2S1 1624 aa24.58■■□□□ 1.53
MRPS28-209ENST00000522987 KIF3BO15066 747 aa24.57■■□□□ 1.52
MRPS28-209ENST00000522987 RTEL1-TNFRSF6BF6WH68 1400 aa24.57■■□□□ 1.52
MRPS28-209ENST00000522987 DHX29Q7Z478 1369 aaKnown RBP24.56■■□□□ 1.52
MRPS28-209ENST00000522987 VPS8Q8N3P4 1428 aa24.55■■□□□ 1.52
MRPS28-209ENST00000522987 LRRC9Q6ZRR7 1453 aa24.52■■□□□ 1.52
MRPS28-209ENST00000522987 FBXO31Q5XUX0 539 aaPredicted RBP24.51■■□□□ 1.51
MRPS28-209ENST00000522987 ARHGEF5Q12774 1597 aa24.5■■□□□ 1.51
MRPS28-209ENST00000522987 KANK4Q5T7N3 995 aaPredicted RBP24.5■■□□□ 1.51
MRPS28-209ENST00000522987 ZNF335Q9H4Z2 1342 aaPredicted RBP24.5■■□□□ 1.51
MRPS28-209ENST00000522987 DNMT1P26358 1616 aaKnown RBP24.5■■□□□ 1.51
MRPS28-209ENST00000522987 CFAP65Q6ZU64 1925 aaKnown RBP24.49■■□□□ 1.51
MRPS28-209ENST00000522987 KDM5DQ9BY66 1539 aa24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms