RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 WDR70Q9NW82 654 aa15.63■□□□□ 0.09
SDCBP-208ENST00000520228 LARP6Q9BRS8 491 aaKnown RBP15.61■□□□□ 0.09
SDCBP-208ENST00000520228 GPHNQ9NQX3 736 aaPredicted RBP15.59■□□□□ 0.09
SDCBP-208ENST00000520228 BCANQ96GW7 911 aa15.58■□□□□ 0.08
SDCBP-208ENST00000520228 G3V3G9 751 aa15.57■□□□□ 0.08
SDCBP-208ENST00000520228 DDX27Q96GQ7 796 aaKnown RBP15.55■□□□□ 0.08
SDCBP-208ENST00000520228 KIF3CO14782 793 aa15.54■□□□□ 0.08
SDCBP-208ENST00000520228 KCNV2Q8TDN2 545 aa15.54■□□□□ 0.08
SDCBP-208ENST00000520228 P3H3Q8IVL6 736 aa15.53■□□□□ 0.08
SDCBP-208ENST00000520228 E2F4Q16254 413 aa15.51■□□□□ 0.07
SDCBP-208ENST00000520228 TMEM92Q6UXU6 159 aa15.51■□□□□ 0.07
SDCBP-208ENST00000520228 TMC2Q8TDI7 906 aa15.49■□□□□ 0.07
SDCBP-208ENST00000520228 C2orf72A6NCS6 295 aa15.48■□□□□ 0.07
SDCBP-208ENST00000520228 FOXK1P85037 733 aa15.48■□□□□ 0.07
SDCBP-208ENST00000520228 CAMK2BQ13554 666 aa15.48■□□□□ 0.07
SDCBP-208ENST00000520228 DSG2Q14126 1118 aa15.48■□□□□ 0.07
SDCBP-208ENST00000520228 PPP1R15BQ5SWA1 713 aa15.48■□□□□ 0.07
SDCBP-208ENST00000520228 POTEB2H3BUK9 544 aa15.44■□□□□ 0.06
SDCBP-208ENST00000520228 POTEJP0CG39 1038 aa15.44■□□□□ 0.06
SDCBP-208ENST00000520228 C3orf67Q6ZVT6 689 aa15.42■□□□□ 0.06
SDCBP-208ENST00000520228 ARHGEF1Q92888 912 aaKnown RBP15.42■□□□□ 0.06
SDCBP-208ENST00000520228 ARIH1Q9Y4X5 557 aaPredicted RBP15.4■□□□□ 0.06
SDCBP-208ENST00000520228 NBR1Q14596 966 aa15.39■□□□□ 0.05
SDCBP-208ENST00000520228 PLPP6Q8IY26 295 aa15.38■□□□□ 0.05
SDCBP-208ENST00000520228 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.35■□□□□ 0.05
SDCBP-208ENST00000520228 EMILIN3Q9NT22 766 aa15.34■□□□□ 0.05
SDCBP-208ENST00000520228 MAMSTRQ6ZN01 415 aa15.23■□□□□ 0.03
SDCBP-208ENST00000520228 DPYSL4O14531 572 aa15.22■□□□□ 0.03
SDCBP-208ENST00000520228 OXER1Q8TDS5 423 aa15.22■□□□□ 0.03
SDCBP-208ENST00000520228 SEMA3EO15041 775 aa15.2■□□□□ 0.02
SDCBP-208ENST00000520228 SLC34A2O95436 690 aa15.2■□□□□ 0.02
SDCBP-208ENST00000520228 SCUBE2Q9NQ36 999 aa15.2■□□□□ 0.02
SDCBP-208ENST00000520228 TESPA1A2RU30 521 aaPredicted RBP15.18■□□□□ 0.02
SDCBP-208ENST00000520228 PDIA6Q15084 440 aa15.18■□□□□ 0.02
SDCBP-208ENST00000520228 PTCD2Q8WV60 388 aaKnown RBP15.17■□□□□ 0.02
SDCBP-208ENST00000520228 SPDYE16A6NNV3 312 aaPredicted RBP15.16■□□□□ 0.02
SDCBP-208ENST00000520228 SLAIN1Q8ND83 568 aa15.15■□□□□ 0.02
SDCBP-208ENST00000520228 UPF1Q92900 1129 aaKnown RBP eCLIP15.14■□□□□ 0.01
SDCBP-208ENST00000520228 MAP3K9P80192 1104 aa15.13■□□□□ 0.01
SDCBP-208ENST00000520228 OTUD5Q96G74 571 aa15.11■□□□□ 0.01
SDCBP-208ENST00000520228 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.1■□□□□ 0.01
SDCBP-208ENST00000520228 HOXB3P14651 431 aaPredicted RBP15.08■□□□□ 0
SDCBP-208ENST00000520228 LHX8Q68G74 356 aa15.08■□□□□ 0
SDCBP-208ENST00000520228 MLLT3P42568 568 aaPredicted RBP15.06■□□□□ 0
SDCBP-208ENST00000520228 TBC1D12O60347 775 aa15.05■□□□□ -0
SDCBP-208ENST00000520228 PCDHGA4Q9Y5G9 962 aa15.04■□□□□ -0
SDCBP-208ENST00000520228 EVI5O60447 810 aa15.03■□□□□ -0
SDCBP-208ENST00000520228 PTGER2P43116 358 aa15.02■□□□□ -0
SDCBP-208ENST00000520228 LMOD2Q6P5Q4 547 aa15.02■□□□□ -0
SDCBP-208ENST00000520228 ANO8Q9HCE9 1232 aaPredicted RBP15.02■□□□□ -0
SDCBP-208ENST00000520228 KDM4FA0A1W2PPD8 638 aa15.01□□□□□ -0.01
SDCBP-208ENST00000520228 DOK7Q18PE1 504 aa15.01□□□□□ -0.01
SDCBP-208ENST00000520228 TPRNQ4KMQ1 711 aa15.01□□□□□ -0.01
SDCBP-208ENST00000520228 SMYD5Q6GMV2 418 aa15.01□□□□□ -0.01
SDCBP-208ENST00000520228 PRKCSHP14314 528 aaPredicted RBP15□□□□□ -0.01
SDCBP-208ENST00000520228 TULP1O00294 542 aaPredicted RBP14.99□□□□□ -0.01
SDCBP-208ENST00000520228 ZSWIM6Q9HCJ5 1215 aa14.97□□□□□ -0.01
SDCBP-208ENST00000520228 GPR153Q6NV75 609 aa14.95□□□□□ -0.02
SDCBP-208ENST00000520228 RIMBP2O15034 1052 aa14.92□□□□□ -0.02
SDCBP-208ENST00000520228 SNPHO15079 494 aa14.92□□□□□ -0.02
SDCBP-208ENST00000520228 ARSIQ5FYB1 569 aa14.91□□□□□ -0.02
SDCBP-208ENST00000520228 ZNF316A6NFI3 1004 aaPredicted RBP14.9□□□□□ -0.02
SDCBP-208ENST00000520228 GRXCR2A6NFK2 248 aa14.9□□□□□ -0.02
SDCBP-208ENST00000520228 OSBPP22059 807 aa14.9□□□□□ -0.02
SDCBP-208ENST00000520228 RBM26Q5T8P6 1007 aaKnown RBP14.9□□□□□ -0.02
SDCBP-208ENST00000520228 DDX12PQ92771 950 aa14.9□□□□□ -0.02
SDCBP-208ENST00000520228 KHSRPQ92945 711 aaKnown RBP eCLIP14.9□□□□□ -0.025e-6■■■■□ 22.3
SDCBP-208ENST00000520228 ZNF710Q8N1W2 664 aa14.87□□□□□ -0.03
SDCBP-208ENST00000520228 NUDT7P0C024 238 aa14.86□□□□□ -0.03
SDCBP-208ENST00000520228 ZC3H15Q8WU90 426 aaKnown RBP14.85□□□□□ -0.03
SDCBP-208ENST00000520228 PRIM1P49642 420 aaKnown RBP14.84□□□□□ -0.03
SDCBP-208ENST00000520228 PHF14O94880 888 aa14.83□□□□□ -0.04
SDCBP-208ENST00000520228 HOXB1P14653 301 aaPredicted RBP14.82□□□□□ -0.04
SDCBP-208ENST00000520228 PCDHGA10Q9Y5H3 936 aa14.82□□□□□ -0.04
SDCBP-208ENST00000520228 JPH4Q96JJ6 628 aa14.8□□□□□ -0.04
SDCBP-208ENST00000520228 EPAS1Q99814 870 aa14.8□□□□□ -0.04
SDCBP-208ENST00000520228 FOSBP53539 338 aa14.79□□□□□ -0.04
SDCBP-208ENST00000520228 GPIHBP1Q8IV16 184 aa14.78□□□□□ -0.04
SDCBP-208ENST00000520228 GPR37O15354 613 aa14.77□□□□□ -0.05
SDCBP-208ENST00000520228 LHX6Q9UPM6 363 aa14.76□□□□□ -0.05
SDCBP-208ENST00000520228 ZMYND10O75800 440 aa14.75□□□□□ -0.05
SDCBP-208ENST00000520228 EN1Q05925 392 aaPredicted RBP14.75□□□□□ -0.05
SDCBP-208ENST00000520228 TYW1BQ6NUM6 668 aa14.75□□□□□ -0.05
SDCBP-208ENST00000520228 FBXW7Q969H0 707 aa14.72□□□□□ -0.05
SDCBP-208ENST00000520228 ZNF454Q8N9F8 522 aa14.71□□□□□ -0.05
SDCBP-208ENST00000520228 NUTM2FA1L443 756 aa14.69□□□□□ -0.06
SDCBP-208ENST00000520228 ST18O60284 1047 aa14.69□□□□□ -0.06
SDCBP-208ENST00000520228 BARGINQ6ZT62 677 aa14.69□□□□□ -0.06
SDCBP-208ENST00000520228 ZDHHC16Q969W1 377 aa14.69□□□□□ -0.06
SDCBP-208ENST00000520228 PSDA5PKW4 1024 aaPredicted RBP14.67□□□□□ -0.06
SDCBP-208ENST00000520228 MAP3K7O43318 606 aa14.66□□□□□ -0.06
SDCBP-208ENST00000520228 RBM33Q96EV2 1170 aaKnown RBP14.66□□□□□ -0.06
SDCBP-208ENST00000520228 NPDC1Q9NQX5 325 aaPredicted RBP14.66□□□□□ -0.06
SDCBP-208ENST00000520228 PTGDRQ13258 359 aa14.65□□□□□ -0.06
SDCBP-208ENST00000520228 TSR1Q2NL82 804 aaKnown RBP14.65□□□□□ -0.06
SDCBP-208ENST00000520228 ADAM33Q9BZ11 813 aa14.65□□□□□ -0.06
SDCBP-208ENST00000520228 CDHR5Q9HBB8 845 aa14.65□□□□□ -0.06
SDCBP-208ENST00000520228 FCHSD2O94868 740 aa14.64□□□□□ -0.07
SDCBP-208ENST00000520228 C6orf132Q5T0Z8 1188 aa14.63□□□□□ -0.07
SDCBP-208ENST00000520228 PPP4R3BQ5MIZ7 849 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms