RNA–Protein interactions for RNA: ENST00000519553.1

PTPN12-213, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 3

Gene PTPN12, Length 395 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-213ENST00000519553 LARP6Q9BRS8 491 aaKnown RBP15.12■□□□□ 0.01
PTPN12-213ENST00000519553 POTEB2H3BUK9 544 aa15.11■□□□□ 0.01
PTPN12-213ENST00000519553 TMEM92Q6UXU6 159 aa15.11■□□□□ 0.01
PTPN12-213ENST00000519553 GPHNQ9NQX3 736 aaPredicted RBP15.11■□□□□ 0.01
PTPN12-213ENST00000519553 KIF3CO14782 793 aa15.09■□□□□ 0.01
PTPN12-213ENST00000519553 POTEJP0CG39 1038 aa15.09■□□□□ 0.01
PTPN12-213ENST00000519553 WDR70Q9NW82 654 aa15.09■□□□□ 0.01
PTPN12-213ENST00000519553 DDX27Q96GQ7 796 aaKnown RBP15.07■□□□□ 0
PTPN12-213ENST00000519553 C2orf72A6NCS6 295 aa15.05■□□□□ -0
PTPN12-213ENST00000519553 C3orf67Q6ZVT6 689 aa15.04■□□□□ -0
PTPN12-213ENST00000519553 TMC2Q8TDI7 906 aa15.04■□□□□ -0
PTPN12-213ENST00000519553 KCNV2Q8TDN2 545 aa15.03■□□□□ -0
PTPN12-213ENST00000519553 DSG2Q14126 1118 aa15.02■□□□□ -0
PTPN12-213ENST00000519553 PPP1R15BQ5SWA1 713 aa15.02■□□□□ -0
PTPN12-213ENST00000519553 FOXK1P85037 733 aa15.01□□□□□ -0.01
PTPN12-213ENST00000519553 E2F4Q16254 413 aa14.99□□□□□ -0.01
PTPN12-213ENST00000519553 P3H3Q8IVL6 736 aa14.99□□□□□ -0.01
PTPN12-213ENST00000519553 CAMK2BQ13554 666 aa14.97□□□□□ -0.01
PTPN12-213ENST00000519553 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.96□□□□□ -0.01
PTPN12-213ENST00000519553 PLPP6Q8IY26 295 aa14.93□□□□□ -0.02
PTPN12-213ENST00000519553 BCANQ96GW7 911 aa14.92□□□□□ -0.02
PTPN12-213ENST00000519553 ARHGEF1Q92888 912 aaKnown RBP14.88□□□□□ -0.03
PTPN12-213ENST00000519553 EMILIN3Q9NT22 766 aa14.88□□□□□ -0.03
PTPN12-213ENST00000519553 ARIH1Q9Y4X5 557 aaPredicted RBP14.87□□□□□ -0.03
PTPN12-213ENST00000519553 MAMSTRQ6ZN01 415 aa14.86□□□□□ -0.03
PTPN12-213ENST00000519553 SCUBE2Q9NQ36 999 aa14.86□□□□□ -0.03
PTPN12-213ENST00000519553 NBR1Q14596 966 aa14.82□□□□□ -0.04
PTPN12-213ENST00000519553 SLAIN1Q8ND83 568 aa14.81□□□□□ -0.04
PTPN12-213ENST00000519553 OTUD5Q96G74 571 aa14.79□□□□□ -0.04
PTPN12-213ENST00000519553 LHX8Q68G74 356 aa14.78□□□□□ -0.04
PTPN12-213ENST00000519553 DPYSL4O14531 572 aa14.77□□□□□ -0.05
PTPN12-213ENST00000519553 OXER1Q8TDS5 423 aa14.76□□□□□ -0.05
PTPN12-213ENST00000519553 SLC34A2O95436 690 aa14.74□□□□□ -0.05
PTPN12-213ENST00000519553 UPF1Q92900 1129 aaKnown RBP eCLIP14.74□□□□□ -0.05
PTPN12-213ENST00000519553 PTCD2Q8WV60 388 aaKnown RBP14.72□□□□□ -0.05
PTPN12-213ENST00000519553 HOXB3P14651 431 aaPredicted RBP14.71□□□□□ -0.05
PTPN12-213ENST00000519553 PDIA6Q15084 440 aa14.71□□□□□ -0.05
PTPN12-213ENST00000519553 SEMA3EO15041 775 aa14.69□□□□□ -0.06
PTPN12-213ENST00000519553 MAP3K9P80192 1104 aa14.66□□□□□ -0.06
PTPN12-213ENST00000519553 TESPA1A2RU30 521 aaPredicted RBP14.65□□□□□ -0.06
PTPN12-213ENST00000519553 SPDYE16A6NNV3 312 aaPredicted RBP14.64□□□□□ -0.07
PTPN12-213ENST00000519553 DOK7Q18PE1 504 aa14.63□□□□□ -0.07
PTPN12-213ENST00000519553 PCDHGA4Q9Y5G9 962 aa14.63□□□□□ -0.07
PTPN12-213ENST00000519553 TBC1D12O60347 775 aa14.59□□□□□ -0.07
PTPN12-213ENST00000519553 EVI5O60447 810 aa14.58□□□□□ -0.08
PTPN12-213ENST00000519553 MLLT3P42568 568 aaPredicted RBP14.58□□□□□ -0.08
PTPN12-213ENST00000519553 KDM4FA0A1W2PPD8 638 aa14.57□□□□□ -0.08
PTPN12-213ENST00000519553 ZSWIM6Q9HCJ5 1215 aa14.56□□□□□ -0.08
PTPN12-213ENST00000519553 GPR153Q6NV75 609 aa14.55□□□□□ -0.08
PTPN12-213ENST00000519553 SNPHO15079 494 aa14.54□□□□□ -0.08
PTPN12-213ENST00000519553 KHSRPQ92945 711 aaKnown RBP eCLIP14.54□□□□□ -0.08
PTPN12-213ENST00000519553 ANO8Q9HCE9 1232 aaPredicted RBP14.54□□□□□ -0.08
PTPN12-213ENST00000519553 RIMBP2O15034 1052 aa14.53□□□□□ -0.08
PTPN12-213ENST00000519553 ARSIQ5FYB1 569 aa14.53□□□□□ -0.08
PTPN12-213ENST00000519553 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.53□□□□□ -0.08
PTPN12-213ENST00000519553 PTGER2P43116 358 aa14.52□□□□□ -0.09
PTPN12-213ENST00000519553 ZNF710Q8N1W2 664 aa14.51□□□□□ -0.09
PTPN12-213ENST00000519553 ZNF316A6NFI3 1004 aaPredicted RBP14.49□□□□□ -0.09
PTPN12-213ENST00000519553 NUDT7P0C024 238 aa14.49□□□□□ -0.09
PTPN12-213ENST00000519553 LMOD2Q6P5Q4 547 aa14.49□□□□□ -0.09
PTPN12-213ENST00000519553 SMYD5Q6GMV2 418 aa14.47□□□□□ -0.09
PTPN12-213ENST00000519553 DDX12PQ92771 950 aa14.47□□□□□ -0.09
PTPN12-213ENST00000519553 GRXCR2A6NFK2 248 aa14.45□□□□□ -0.1
PTPN12-213ENST00000519553 TULP1O00294 542 aaPredicted RBP14.45□□□□□ -0.1
PTPN12-213ENST00000519553 HOXB1P14653 301 aaPredicted RBP14.44□□□□□ -0.1
PTPN12-213ENST00000519553 OSBPP22059 807 aa14.42□□□□□ -0.1
PTPN12-213ENST00000519553 PRIM1P49642 420 aaKnown RBP14.41□□□□□ -0.1
PTPN12-213ENST00000519553 RBM26Q5T8P6 1007 aaKnown RBP14.41□□□□□ -0.1
PTPN12-213ENST00000519553 TPRNQ4KMQ1 711 aa14.4□□□□□ -0.1
PTPN12-213ENST00000519553 JPH4Q96JJ6 628 aa14.39□□□□□ -0.11
PTPN12-213ENST00000519553 PHF14O94880 888 aa14.38□□□□□ -0.11
PTPN12-213ENST00000519553 PCDHGA10Q9Y5H3 936 aa14.38□□□□□ -0.11
PTPN12-213ENST00000519553 LHX6Q9UPM6 363 aa14.37□□□□□ -0.11
PTPN12-213ENST00000519553 ST18O60284 1047 aa14.36□□□□□ -0.11
PTPN12-213ENST00000519553 PRKCSHP14314 528 aaPredicted RBP14.36□□□□□ -0.11
PTPN12-213ENST00000519553 FOSBP53539 338 aa14.36□□□□□ -0.11
PTPN12-213ENST00000519553 EPAS1Q99814 870 aa14.34□□□□□ -0.11
PTPN12-213ENST00000519553 EN1Q05925 392 aaPredicted RBP14.32□□□□□ -0.12
PTPN12-213ENST00000519553 ZNF454Q8N9F8 522 aa14.32□□□□□ -0.12
PTPN12-213ENST00000519553 LCE2DQ5TA82 110 aaPredicted RBP14.31□□□□□ -0.12
PTPN12-213ENST00000519553 TYW1BQ6NUM6 668 aa14.31□□□□□ -0.12
PTPN12-213ENST00000519553 ZC3H15Q8WU90 426 aaKnown RBP14.3□□□□□ -0.12
PTPN12-213ENST00000519553 GPR37O15354 613 aa14.29□□□□□ -0.12
PTPN12-213ENST00000519553 GPIHBP1Q8IV16 184 aa14.29□□□□□ -0.12
PTPN12-213ENST00000519553 FBXW7Q969H0 707 aa14.28□□□□□ -0.12
PTPN12-213ENST00000519553 PLSCR2Q9NRY7 297 aa14.28□□□□□ -0.12
PTPN12-213ENST00000519553 ZDHHC16Q969W1 377 aa14.27□□□□□ -0.13
PTPN12-213ENST00000519553 PSDA5PKW4 1024 aaPredicted RBP14.26□□□□□ -0.13
PTPN12-213ENST00000519553 RBM33Q96EV2 1170 aaKnown RBP14.26□□□□□ -0.13
PTPN12-213ENST00000519553 FAM163AQ96GL9 167 aaPredicted RBP14.26□□□□□ -0.13
PTPN12-213ENST00000519553 ADAM33Q9BZ11 813 aa14.25□□□□□ -0.13
PTPN12-213ENST00000519553 CDHR5Q9HBB8 845 aa14.25□□□□□ -0.13
PTPN12-213ENST00000519553 MAP3K7O43318 606 aa14.24□□□□□ -0.13
PTPN12-213ENST00000519553 TSR1Q2NL82 804 aaKnown RBP14.24□□□□□ -0.13
PTPN12-213ENST00000519553 MARVELD3Q96A59 401 aa14.24□□□□□ -0.13
PTPN12-213ENST00000519553 NUTM2FA1L443 756 aa14.23□□□□□ -0.13
PTPN12-213ENST00000519553 PPP4R3BQ5MIZ7 849 aa14.23□□□□□ -0.13
PTPN12-213ENST00000519553 ZMYND10O75800 440 aa14.21□□□□□ -0.13
PTPN12-213ENST00000519553 EMP3P54852 163 aa14.21□□□□□ -0.13
PTPN12-213ENST00000519553 PTGDRQ13258 359 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 361.5 ms