RNA–Protein interactions for RNA: ENST00000517138.1

SCARNA1-201, small Cajal body-specific RNA 1, humanhuman

BASIC

Gene SCARNA1, Length 166 nt, Biotype scaRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA1-201ENST00000517138 C2orf72A6NCS6 295 aa14.37□□□□□ -0.11
SCARNA1-201ENST00000517138 KIF3CO14782 793 aa14.36□□□□□ -0.11
SCARNA1-201ENST00000517138 NCKAP5LQ9HCH0 1330 aa14.32□□□□□ -0.12
SCARNA1-201ENST00000517138 LCE2DQ5TA82 110 aaPredicted RBP14.28□□□□□ -0.12
SCARNA1-201ENST00000517138 TMC2Q8TDI7 906 aa14.28□□□□□ -0.12
SCARNA1-201ENST00000517138 CRISPLD2Q9H0B8 497 aa14.28□□□□□ -0.12
SCARNA1-201ENST00000517138 HOXB3P14651 431 aaPredicted RBP14.27□□□□□ -0.13
SCARNA1-201ENST00000517138 PLCB2Q00722 1185 aa14.27□□□□□ -0.13
SCARNA1-201ENST00000517138 FAM163AQ96GL9 167 aaPredicted RBP14.26□□□□□ -0.13
SCARNA1-201ENST00000517138 GPHNQ9NQX3 736 aaPredicted RBP14.26□□□□□ -0.13
SCARNA1-201ENST00000517138 TSHZ2Q9NRE2 1034 aa14.26□□□□□ -0.13
SCARNA1-201ENST00000517138 DSG2Q14126 1118 aa14.24□□□□□ -0.13
SCARNA1-201ENST00000517138 LARP6Q9BRS8 491 aaKnown RBP14.2□□□□□ -0.14
SCARNA1-201ENST00000517138 ST18O60284 1047 aa14.19□□□□□ -0.14
SCARNA1-201ENST00000517138 FOXK1P85037 733 aa14.19□□□□□ -0.14
SCARNA1-201ENST00000517138 PDE4AP27815 886 aa14.18□□□□□ -0.14
SCARNA1-201ENST00000517138 PLPP6Q8IY26 295 aa14.18□□□□□ -0.14
SCARNA1-201ENST00000517138 SNPHO15079 494 aa14.16□□□□□ -0.14
SCARNA1-201ENST00000517138 PPP1R15BQ5SWA1 713 aa14.14□□□□□ -0.15
SCARNA1-201ENST00000517138 MFSD10Q14728 455 aa14.13□□□□□ -0.15
SCARNA1-201ENST00000517138 DOK7Q18PE1 504 aa14.12□□□□□ -0.15
SCARNA1-201ENST00000517138 DDX27Q96GQ7 796 aaKnown RBP14.12□□□□□ -0.15
SCARNA1-201ENST00000517138 KHSRPQ92945 711 aaKnown RBP eCLIP14.1□□□□□ -0.15
SCARNA1-201ENST00000517138 HAP1P54257 671 aaPredicted RBP14.08□□□□□ -0.16
SCARNA1-201ENST00000517138 ZNF710Q8N1W2 664 aa14.08□□□□□ -0.16
SCARNA1-201ENST00000517138 GPR153Q6NV75 609 aa14.07□□□□□ -0.16
SCARNA1-201ENST00000517138 MARVELD3Q96A59 401 aa14.07□□□□□ -0.16
SCARNA1-201ENST00000517138 ARSIQ5FYB1 569 aa14.06□□□□□ -0.16
SCARNA1-201ENST00000517138 SLC34A2O95436 690 aa14.04□□□□□ -0.16
SCARNA1-201ENST00000517138 UPF1Q92900 1129 aaKnown RBP eCLIP14.03□□□□□ -0.16
SCARNA1-201ENST00000517138 PCDHGA4Q9Y5G9 962 aa14.03□□□□□ -0.16
SCARNA1-201ENST00000517138 HOXB1P14653 301 aaPredicted RBP14.02□□□□□ -0.17
SCARNA1-201ENST00000517138 EMILIN3Q9NT22 766 aa14.02□□□□□ -0.17
SCARNA1-201ENST00000517138 RIMBP2O15034 1052 aa14.01□□□□□ -0.17
SCARNA1-201ENST00000517138 POTEMA6NI47 508 aa13.99□□□□□ -0.17
SCARNA1-201ENST00000517138 POTEGQ6S5H5 508 aa13.99□□□□□ -0.17
SCARNA1-201ENST00000517138 PTCD2Q8WV60 388 aaKnown RBP13.99□□□□□ -0.17
SCARNA1-201ENST00000517138 OXER1Q8TDS5 423 aa13.98□□□□□ -0.17
SCARNA1-201ENST00000517138 ZSWIM6Q9HCJ5 1215 aa13.98□□□□□ -0.17
SCARNA1-201ENST00000517138 NUDT7P0C024 238 aa13.97□□□□□ -0.17
SCARNA1-201ENST00000517138 CAMK2BQ13554 666 aa13.96□□□□□ -0.17
SCARNA1-201ENST00000517138 POTEB3A0JP26 581 aa13.95□□□□□ -0.18
SCARNA1-201ENST00000517138 EMP3P54852 163 aa13.95□□□□□ -0.18
SCARNA1-201ENST00000517138 POTEBQ6S5H4 581 aa13.95□□□□□ -0.18
SCARNA1-201ENST00000517138 KDM2AQ9Y2K7 1162 aa13.94□□□□□ -0.18
SCARNA1-201ENST00000517138 WDR70Q9NW82 654 aa13.93□□□□□ -0.18
SCARNA1-201ENST00000517138 KDM4FA0A1W2PPD8 638 aa13.92□□□□□ -0.18
SCARNA1-201ENST00000517138 FAM205CA6NFA0 338 aa13.91□□□□□ -0.18
SCARNA1-201ENST00000517138 E2F4Q16254 413 aa13.89□□□□□ -0.19
SCARNA1-201ENST00000517138 DPYSL4O14531 572 aa13.87□□□□□ -0.19
SCARNA1-201ENST00000517138 LHX6Q9UPM6 363 aa13.87□□□□□ -0.19
SCARNA1-201ENST00000517138 HS3ST6Q96QI5 342 aa13.86□□□□□ -0.19
SCARNA1-201ENST00000517138 TBC1D12O60347 775 aa13.85□□□□□ -0.19
SCARNA1-201ENST00000517138 MAP3K9P80192 1104 aa13.85□□□□□ -0.19
SCARNA1-201ENST00000517138 ERBB3P21860 1342 aa13.85□□□□□ -0.19
SCARNA1-201ENST00000517138 ZNF316A6NFI3 1004 aaPredicted RBP13.84□□□□□ -0.19
SCARNA1-201ENST00000517138 VARS2Q5ST30 1063 aaKnown RBP13.84□□□□□ -0.19
SCARNA1-201ENST00000517138 KCNV2Q8TDN2 545 aa13.83□□□□□ -0.2
SCARNA1-201ENST00000517138 EVI5O60447 810 aa13.82□□□□□ -0.2
SCARNA1-201ENST00000517138 VSIG10Q8N0Z9 540 aa13.77□□□□□ -0.21
SCARNA1-201ENST00000517138 ANO8Q9HCE9 1232 aaPredicted RBP13.77□□□□□ -0.21
SCARNA1-201ENST00000517138 CDAN1Q8IWY9 1227 aa13.75□□□□□ -0.21
SCARNA1-201ENST00000517138 ARIH1Q9Y4X5 557 aaPredicted RBP13.73□□□□□ -0.21
SCARNA1-201ENST00000517138 PDIA6Q15084 440 aa13.71□□□□□ -0.21
SCARNA1-201ENST00000517138 POTEEQ6S8J3 1075 aa13.7□□□□□ -0.22
SCARNA1-201ENST00000517138 ZNF687Q8N1G0 1237 aa13.68□□□□□ -0.22
SCARNA1-201ENST00000517138 ZNF454Q8N9F8 522 aa13.68□□□□□ -0.22
SCARNA1-201ENST00000517138 KRTAP3-3Q9BYR6 98 aa13.68□□□□□ -0.22
SCARNA1-201ENST00000517138 KRTAP3-2Q9BYR7 98 aa13.68□□□□□ -0.22
SCARNA1-201ENST00000517138 FOSBP53539 338 aa13.67□□□□□ -0.22
SCARNA1-201ENST00000517138 DDX12PQ92771 950 aa13.67□□□□□ -0.22
SCARNA1-201ENST00000517138 ARHGEF1Q92888 912 aaKnown RBP13.67□□□□□ -0.22
SCARNA1-201ENST00000517138 AXIN2Q9Y2T1 843 aa13.65□□□□□ -0.22
SCARNA1-201ENST00000517138 PCDHGA10Q9Y5H3 936 aa13.65□□□□□ -0.22
SCARNA1-201ENST00000517138 SPDYE16A6NNV3 312 aaPredicted RBP13.63□□□□□ -0.23
SCARNA1-201ENST00000517138 P3H3Q8IVL6 736 aa13.63□□□□□ -0.23
SCARNA1-201ENST00000517138 JPH4Q96JJ6 628 aa13.63□□□□□ -0.23
SCARNA1-201ENST00000517138 PPP4R3BQ5MIZ7 849 aa13.62□□□□□ -0.23
SCARNA1-201ENST00000517138 PTGER2P43116 358 aa13.61□□□□□ -0.23
SCARNA1-201ENST00000517138 PSDA5PKW4 1024 aaPredicted RBP13.6□□□□□ -0.23
SCARNA1-201ENST00000517138 ADAM33Q9BZ11 813 aa13.6□□□□□ -0.23
SCARNA1-201ENST00000517138 MLLT3P42568 568 aaPredicted RBP13.59□□□□□ -0.23
SCARNA1-201ENST00000517138 PRIM1P49642 420 aaKnown RBP13.59□□□□□ -0.23
SCARNA1-201ENST00000517138 GRXCR2A6NFK2 248 aa13.58□□□□□ -0.24
SCARNA1-201ENST00000517138 PHF14O94880 888 aa13.58□□□□□ -0.24
SCARNA1-201ENST00000517138 PSEN2P49810 448 aa13.58□□□□□ -0.24
SCARNA1-201ENST00000517138 SEMA3EO15041 775 aa13.57□□□□□ -0.24
SCARNA1-201ENST00000517138 ZDHHC16Q969W1 377 aa13.57□□□□□ -0.24
SCARNA1-201ENST00000517138 PCDH10Q9P2E7 1040 aa13.56□□□□□ -0.24
SCARNA1-201ENST00000517138 NBR1Q14596 966 aa13.55□□□□□ -0.24
SCARNA1-201ENST00000517138 DMRTA1Q5VZB9 504 aa13.54□□□□□ -0.24
SCARNA1-201ENST00000517138 RBM33Q96EV2 1170 aaKnown RBP13.54□□□□□ -0.24
SCARNA1-201ENST00000517138 SLC24A1O60721 1099 aa13.53□□□□□ -0.24
SCARNA1-201ENST00000517138 TYW1BQ6NUM6 668 aa13.53□□□□□ -0.24
SCARNA1-201ENST00000517138 KCNK17Q96T54 332 aa13.53□□□□□ -0.24
SCARNA1-201ENST00000517138 BCL2L12Q9HB09 334 aa13.53□□□□□ -0.24
SCARNA1-201ENST00000517138 ARHGAP33O14559 1287 aa13.52□□□□□ -0.25
SCARNA1-201ENST00000517138 OSBPP22059 807 aa13.51□□□□□ -0.25
SCARNA1-201ENST00000517138 EPAS1Q99814 870 aa13.5□□□□□ -0.25
SCARNA1-201ENST00000517138 PBX2P40425 430 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms