RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 PLCG2P16885 1265 aa12.16□□□□□ -0.46
HMGCS1-207ENST00000514610 PDE4AP27815 886 aa12.15□□□□□ -0.46
HMGCS1-207ENST00000514610 MFSD10Q14728 455 aa12.15□□□□□ -0.46
HMGCS1-207ENST00000514610 NBR1Q14596 966 aa12.14□□□□□ -0.47
HMGCS1-207ENST00000514610 P3H3Q8IVL6 736 aa12.14□□□□□ -0.47
HMGCS1-207ENST00000514610 TMEM121BQ9BXQ6 578 aaPredicted RBP12.13□□□□□ -0.47
HMGCS1-207ENST00000514610 BOLA1Q9Y3E2 137 aa12.12□□□□□ -0.47
HMGCS1-207ENST00000514610 SEC24BO95487 1268 aa12.1□□□□□ -0.47
HMGCS1-207ENST00000514610 E2F4Q16254 413 aa12.1□□□□□ -0.47
HMGCS1-207ENST00000514610 DDX27Q96GQ7 796 aaKnown RBP12.09□□□□□ -0.47
HMGCS1-207ENST00000514610 GPHNQ9NQX3 736 aaPredicted RBP12.08□□□□□ -0.48
HMGCS1-207ENST00000514610 MAMSTRQ6ZN01 415 aa12.06□□□□□ -0.48
HMGCS1-207ENST00000514610 L3MBTL3Q96JM7 780 aaPredicted RBP12.05□□□□□ -0.48
HMGCS1-207ENST00000514610 PPP1R15BQ5SWA1 713 aa12.04□□□□□ -0.48
HMGCS1-207ENST00000514610 G3V3G9 751 aa12.03□□□□□ -0.48
HMGCS1-207ENST00000514610 PRKCSHP14314 528 aaPredicted RBP12.03□□□□□ -0.48
HMGCS1-207ENST00000514610 CAMK2BQ13554 666 aa12.03□□□□□ -0.48
HMGCS1-207ENST00000514610 DSG2Q14126 1118 aa12.03□□□□□ -0.48
HMGCS1-207ENST00000514610 TMEM92Q6UXU6 159 aa12.03□□□□□ -0.48
HMGCS1-207ENST00000514610 ARHGEF1Q92888 912 aaKnown RBP12.02□□□□□ -0.49
HMGCS1-207ENST00000514610 C2orf72A6NCS6 295 aa12.01□□□□□ -0.49
HMGCS1-207ENST00000514610 KIF3CO14782 793 aa12.01□□□□□ -0.49
HMGCS1-207ENST00000514610 TMC2Q8TDI7 906 aa12□□□□□ -0.49
HMGCS1-207ENST00000514610 SCUBE2Q9NQ36 999 aa12□□□□□ -0.49
HMGCS1-207ENST00000514610 POTEMA6NI47 508 aa11.99□□□□□ -0.49
HMGCS1-207ENST00000514610 FOXK1P85037 733 aa11.98□□□□□ -0.49
HMGCS1-207ENST00000514610 TPRNQ4KMQ1 711 aa11.97□□□□□ -0.49
HMGCS1-207ENST00000514610 POTEGQ6S5H5 508 aa11.96□□□□□ -0.49
HMGCS1-207ENST00000514610 ARIH1Q9Y4X5 557 aaPredicted RBP11.96□□□□□ -0.49
HMGCS1-207ENST00000514610 PLPP6Q8IY26 295 aa11.95□□□□□ -0.5
HMGCS1-207ENST00000514610 EMILIN3Q9NT22 766 aa11.95□□□□□ -0.5
HMGCS1-207ENST00000514610 LCE2DQ5TA82 110 aaPredicted RBP11.93□□□□□ -0.5
HMGCS1-207ENST00000514610 PLSCR2Q9NRY7 297 aa11.93□□□□□ -0.5
HMGCS1-207ENST00000514610 SEMA3EO15041 775 aa11.92□□□□□ -0.5
HMGCS1-207ENST00000514610 TESPA1A2RU30 521 aaPredicted RBP11.88□□□□□ -0.51
HMGCS1-207ENST00000514610 DPYSL4O14531 572 aa11.88□□□□□ -0.51
HMGCS1-207ENST00000514610 C3orf67Q6ZVT6 689 aa11.88□□□□□ -0.51
HMGCS1-207ENST00000514610 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.85□□□□□ -0.51
HMGCS1-207ENST00000514610 FAM163AQ96GL9 167 aaPredicted RBP11.85□□□□□ -0.51
HMGCS1-207ENST00000514610 LMOD2Q6P5Q4 547 aa11.83□□□□□ -0.52
HMGCS1-207ENST00000514610 PDIA6Q15084 440 aa11.81□□□□□ -0.52
HMGCS1-207ENST00000514610 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.81□□□□□ -0.52
HMGCS1-207ENST00000514610 OXER1Q8TDS5 423 aa11.8□□□□□ -0.52
HMGCS1-207ENST00000514610 UPF1Q92900 1129 aaKnown RBP eCLIP11.8□□□□□ -0.52
HMGCS1-207ENST00000514610 MLLT3P42568 568 aaPredicted RBP11.79□□□□□ -0.52
HMGCS1-207ENST00000514610 SPDYE16A6NNV3 312 aaPredicted RBP11.77□□□□□ -0.53
HMGCS1-207ENST00000514610 SLAIN1Q8ND83 568 aa11.76□□□□□ -0.53
HMGCS1-207ENST00000514610 MAP3K9P80192 1104 aa11.75□□□□□ -0.53
HMGCS1-207ENST00000514610 PCDH10Q9P2E7 1040 aa11.74□□□□□ -0.53
HMGCS1-207ENST00000514610 TULP1O00294 542 aaPredicted RBP11.73□□□□□ -0.53
HMGCS1-207ENST00000514610 PTCD2Q8WV60 388 aaKnown RBP11.72□□□□□ -0.53
HMGCS1-207ENST00000514610 SLC34A2O95436 690 aa11.71□□□□□ -0.53
HMGCS1-207ENST00000514610 SMYD5Q6GMV2 418 aa11.7□□□□□ -0.54
HMGCS1-207ENST00000514610 RBM26Q5T8P6 1007 aaKnown RBP11.68□□□□□ -0.54
HMGCS1-207ENST00000514610 ZC3H15Q8WU90 426 aaKnown RBP11.67□□□□□ -0.54
HMGCS1-207ENST00000514610 EVI5O60447 810 aa11.66□□□□□ -0.54
HMGCS1-207ENST00000514610 ST18O60284 1047 aa11.65□□□□□ -0.54
HMGCS1-207ENST00000514610 GRXCR2A6NFK2 248 aa11.64□□□□□ -0.55
HMGCS1-207ENST00000514610 TBC1D12O60347 775 aa11.64□□□□□ -0.55
HMGCS1-207ENST00000514610 PCDHGA4Q9Y5G9 962 aa11.64□□□□□ -0.55
HMGCS1-207ENST00000514610 HOXB3P14651 431 aaPredicted RBP11.63□□□□□ -0.55
HMGCS1-207ENST00000514610 PTGER2P43116 358 aa11.63□□□□□ -0.55
HMGCS1-207ENST00000514610 DDX12PQ92771 950 aa11.62□□□□□ -0.55
HMGCS1-207ENST00000514610 ANO8Q9HCE9 1232 aaPredicted RBP11.61□□□□□ -0.55
HMGCS1-207ENST00000514610 KDM4FA0A1W2PPD8 638 aa11.6□□□□□ -0.55
HMGCS1-207ENST00000514610 OSBPP22059 807 aa11.6□□□□□ -0.55
HMGCS1-207ENST00000514610 PRIM1P49642 420 aaKnown RBP11.6□□□□□ -0.55
HMGCS1-207ENST00000514610 GPIHBP1Q8IV16 184 aa11.57□□□□□ -0.56
HMGCS1-207ENST00000514610 CDAN1Q8IWY9 1227 aa11.57□□□□□ -0.56
HMGCS1-207ENST00000514610 GPR37O15354 613 aa11.56□□□□□ -0.56
HMGCS1-207ENST00000514610 ZMYND10O75800 440 aa11.56□□□□□ -0.56
HMGCS1-207ENST00000514610 KHSRPQ92945 711 aaKnown RBP eCLIP11.56□□□□□ -0.566e-8■□□□□ 8.8
HMGCS1-207ENST00000514610 ZNF316A6NFI3 1004 aaPredicted RBP11.55□□□□□ -0.56
HMGCS1-207ENST00000514610 DOK7Q18PE1 504 aa11.55□□□□□ -0.56
HMGCS1-207ENST00000514610 ARSIQ5FYB1 569 aa11.53□□□□□ -0.56
HMGCS1-207ENST00000514610 SNPHO15079 494 aa11.52□□□□□ -0.57
HMGCS1-207ENST00000514610 GPR153Q6NV75 609 aa11.52□□□□□ -0.57
HMGCS1-207ENST00000514610 BARGINQ6ZT62 677 aa11.52□□□□□ -0.57
HMGCS1-207ENST00000514610 NUDT7P0C024 238 aa11.51□□□□□ -0.57
HMGCS1-207ENST00000514610 SLC24A3Q9HC58 644 aa11.51□□□□□ -0.57
HMGCS1-207ENST00000514610 NUTM2FA1L443 756 aa11.5□□□□□ -0.57
HMGCS1-207ENST00000514610 PCDHGA10Q9Y5H3 936 aa11.5□□□□□ -0.57
HMGCS1-207ENST00000514610 PHF14O94880 888 aa11.49□□□□□ -0.57
HMGCS1-207ENST00000514610 ZSWIM6Q9HCJ5 1215 aa11.49□□□□□ -0.57
HMGCS1-207ENST00000514610 RIMBP2O15034 1052 aa11.47□□□□□ -0.57
HMGCS1-207ENST00000514610 FOSBP53539 338 aa11.46□□□□□ -0.57
HMGCS1-207ENST00000514610 EN1Q05925 392 aaPredicted RBP11.46□□□□□ -0.57
HMGCS1-207ENST00000514610 ZNF710Q8N1W2 664 aa11.46□□□□□ -0.57
HMGCS1-207ENST00000514610 MARVELD3Q96A59 401 aa11.46□□□□□ -0.57
HMGCS1-207ENST00000514610 JPH4Q96JJ6 628 aa11.46□□□□□ -0.57
HMGCS1-207ENST00000514610 EPAS1Q99814 870 aa11.46□□□□□ -0.57
HMGCS1-207ENST00000514610 CDHR5Q9HBB8 845 aa11.45□□□□□ -0.58
HMGCS1-207ENST00000514610 TYW1BQ6NUM6 668 aa11.44□□□□□ -0.58
HMGCS1-207ENST00000514610 RBM33Q96EV2 1170 aaKnown RBP11.44□□□□□ -0.58
HMGCS1-207ENST00000514610 PTGDRQ13258 359 aa11.42□□□□□ -0.58
HMGCS1-207ENST00000514610 MAP3K7O43318 606 aa11.41□□□□□ -0.58
HMGCS1-207ENST00000514610 FECHP22830 423 aa11.41□□□□□ -0.58
HMGCS1-207ENST00000514610 TSR1Q2NL82 804 aaKnown RBP11.41□□□□□ -0.58
HMGCS1-207ENST00000514610 ZNF454Q8N9F8 522 aa11.41□□□□□ -0.58
HMGCS1-207ENST00000514610 LHX6Q9UPM6 363 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms