RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 NECTIN2Q92692 538 aa10.06□□□□□ -0.8
NIPBL-208ENST00000514335 ZNF692Q9BU19 519 aaPredicted RBP10.06□□□□□ -0.8
NIPBL-208ENST00000514335 NUP160Q12769 1436 aa10.06□□□□□ -0.8
NIPBL-208ENST00000514335 FTSJ3Q8IY81 847 aaKnown RBP10.06□□□□□ -0.8
NIPBL-208ENST00000514335 CERS3Q8IU89 383 aa10.05□□□□□ -0.8
NIPBL-208ENST00000514335 ADAMTS12P58397 1594 aa10.05□□□□□ -0.8
NIPBL-208ENST00000514335 SLC4A1APQ9BWU0 796 aaKnown RBP10.04□□□□□ -0.8
NIPBL-208ENST00000514335 PRDM16Q9HAZ2 1276 aa10.04□□□□□ -0.8
NIPBL-208ENST00000514335 ERCC6L2Q5T890 1561 aa10.04□□□□□ -0.8
NIPBL-208ENST00000514335 CWC22Q9HCG8 908 aaKnown RBP10.04□□□□□ -0.8
NIPBL-208ENST00000514335 KIF13AQ9H1H9 1805 aa10.03□□□□□ -0.8
NIPBL-208ENST00000514335 ZNF526Q8TF50 670 aaPredicted RBP10.03□□□□□ -0.8
NIPBL-208ENST00000514335 TRHP20396 242 aaPredicted RBP10.03□□□□□ -0.8
NIPBL-208ENST00000514335 ARID3AQ99856 593 aa10.03□□□□□ -0.8
NIPBL-208ENST00000514335 POLA1P09884 1462 aaPredicted RBP10.02□□□□□ -0.8
NIPBL-208ENST00000514335 CLSTN1O94985 981 aa10.01□□□□□ -0.81
NIPBL-208ENST00000514335 STAC3Q96MF2 364 aa10□□□□□ -0.81
NIPBL-208ENST00000514335 MSH5O43196 834 aa9.99□□□□□ -0.81
NIPBL-208ENST00000514335 PSMD1Q99460 953 aa9.98□□□□□ -0.81
NIPBL-208ENST00000514335 KIAA0586Q9BVV6 1533 aa9.98□□□□□ -0.81
NIPBL-208ENST00000514335 CCDC88BA6NC98 1476 aa9.97□□□□□ -0.81
NIPBL-208ENST00000514335 CANXP27824 592 aaKnown RBP9.96□□□□□ -0.81
NIPBL-208ENST00000514335 ZNF608Q9ULD9 1512 aaPredicted RBP9.96□□□□□ -0.82
NIPBL-208ENST00000514335 PLCD4Q9BRC7 762 aa9.94□□□□□ -0.82
NIPBL-208ENST00000514335 CUL7Q14999 1698 aa9.94□□□□□ -0.82
NIPBL-208ENST00000514335 UHRF1BP1LA0JNW5 1464 aa9.94□□□□□ -0.82
NIPBL-208ENST00000514335 ZBTB22O15209 634 aa9.93□□□□□ -0.82
NIPBL-208ENST00000514335 PLCD3Q8N3E9 789 aa9.93□□□□□ -0.82
NIPBL-208ENST00000514335 GRIPAP1Q4V328 841 aa9.93□□□□□ -0.82
NIPBL-208ENST00000514335 DIP2BQ9P265 1576 aa9.92□□□□□ -0.82
NIPBL-208ENST00000514335 CEP170Q5SW79 1584 aa9.91□□□□□ -0.82
NIPBL-208ENST00000514335 SNAPC4Q5SXM2 1469 aa9.91□□□□□ -0.82
NIPBL-208ENST00000514335 TOP2BQ02880 1626 aa9.91□□□□□ -0.82
NIPBL-208ENST00000514335 GAPVD1Q14C86 1478 aa9.9□□□□□ -0.82
NIPBL-208ENST00000514335 ABCC10Q5T3U5 1492 aa9.9□□□□□ -0.82
NIPBL-208ENST00000514335 RUSC2Q8N2Y8 1516 aa9.9□□□□□ -0.82
NIPBL-208ENST00000514335 GRIN2AQ12879 1464 aa9.89□□□□□ -0.83
NIPBL-208ENST00000514335 PATL2C9JE40 543 aaKnown RBP9.89□□□□□ -0.83
NIPBL-208ENST00000514335 FHAD1B1AJZ9 1412 aa9.88□□□□□ -0.83
NIPBL-208ENST00000514335 CNGB1Q14028 1251 aaPredicted RBP9.87□□□□□ -0.83
NIPBL-208ENST00000514335 PRDM4Q9UKN5 801 aa9.87□□□□□ -0.83
NIPBL-208ENST00000514335 FAM193AP78312 1265 aa9.86□□□□□ -0.83
NIPBL-208ENST00000514335 CUX1P39880 1505 aa9.86□□□□□ -0.83
NIPBL-208ENST00000514335 RBM19Q9Y4C8 960 aaKnown RBP9.86□□□□□ -0.83
NIPBL-208ENST00000514335 SUPT16HQ9Y5B9 1047 aaKnown RBP9.86□□□□□ -0.83
NIPBL-208ENST00000514335 FGD5Q6ZNL6 1462 aa9.85□□□□□ -0.83
NIPBL-208ENST00000514335 OS9Q13438 667 aaPredicted RBP9.85□□□□□ -0.83
NIPBL-208ENST00000514335 ZNF830Q96NB3 372 aaPredicted RBP9.84□□□□□ -0.83
NIPBL-208ENST00000514335 MAP3K4Q9Y6R4 1608 aa9.84□□□□□ -0.83
NIPBL-208ENST00000514335 SOGA1O94964 1423 aa9.84□□□□□ -0.83
NIPBL-208ENST00000514335 RGS3P49796 1198 aa9.83□□□□□ -0.84
NIPBL-208ENST00000514335 ARID4BQ4LE39 1312 aaPredicted RBP9.83□□□□□ -0.84
NIPBL-208ENST00000514335 SOX12O15370 315 aa9.82□□□□□ -0.84
NIPBL-208ENST00000514335 NPM1P06748 294 aaKnown RBP eCLIP9.82□□□□□ -0.84
NIPBL-208ENST00000514335 C1orf115Q9H7X2 142 aa9.82□□□□□ -0.84
NIPBL-208ENST00000514335 FAM177A1Q8N128 213 aaPredicted RBP9.82□□□□□ -0.84
NIPBL-208ENST00000514335 RGS22Q8NE09 1264 aa9.8□□□□□ -0.84
NIPBL-208ENST00000514335 CC2D2BQ6DHV5 1058 aa9.8□□□□□ -0.84
NIPBL-208ENST00000514335 PPRC1Q5VV67 1664 aaKnown RBP9.8□□□□□ -0.84
NIPBL-208ENST00000514335 RTL5Q5HYW3 569 aaPredicted RBP9.79□□□□□ -0.84
NIPBL-208ENST00000514335 PPP4R3CPQ6ZMV5 832 aa9.79□□□□□ -0.84
NIPBL-208ENST00000514335 USP35Q9P2H5 1018 aa9.79□□□□□ -0.84
NIPBL-208ENST00000514335 FKBP8Q14318 412 aa9.79□□□□□ -0.84
NIPBL-208ENST00000514335 PHLDB1Q86UU1 1377 aa9.79□□□□□ -0.84
NIPBL-208ENST00000514335 CFAP43Q8NDM7 1665 aa9.79□□□□□ -0.84
NIPBL-208ENST00000514335 ANAPC15P60006 121 aa9.79□□□□□ -0.84
NIPBL-208ENST00000514335 KDM4AO75164 1064 aa9.78□□□□□ -0.84
NIPBL-208ENST00000514335 MCCP23508 829 aa9.78□□□□□ -0.84
NIPBL-208ENST00000514335 PTMAP06454 111 aaKnown RBP9.78□□□□□ -0.84
NIPBL-208ENST00000514335 PTMSP20962 102 aa9.78□□□□□ -0.84
NIPBL-208ENST00000514335 FOXD4L5Q5VV16 416 aaPredicted RBP9.78□□□□□ -0.84
NIPBL-208ENST00000514335 FOXD4L4Q8WXT5 416 aaPredicted RBP9.78□□□□□ -0.84
NIPBL-208ENST00000514335 HSP90AA2PQ14568 343 aaPredicted RBP9.77□□□□□ -0.84
NIPBL-208ENST00000514335 SLC52A1Q9NWF4 448 aa9.77□□□□□ -0.84
NIPBL-208ENST00000514335 ZBTB7CA1YPR0 619 aa9.77□□□□□ -0.85
NIPBL-208ENST00000514335 KDM6BO15054 1643 aa9.77□□□□□ -0.85
NIPBL-208ENST00000514335 TEX14Q8IWB6 1497 aa9.77□□□□□ -0.85
NIPBL-208ENST00000514335 CCDC27Q2M243 656 aa9.76□□□□□ -0.85
NIPBL-208ENST00000514335 PPM1GO15355 546 aaPredicted RBP9.76□□□□□ -0.85
NIPBL-208ENST00000514335 PLB1Q6P1J6 1458 aa9.75□□□□□ -0.85
NIPBL-208ENST00000514335 ADCY10Q96PN6 1610 aa9.74□□□□□ -0.85
NIPBL-208ENST00000514335 CDCA8Q53HL2 280 aa9.74□□□□□ -0.85
NIPBL-208ENST00000514335 RRP9O43818 475 aaKnown RBP9.74□□□□□ -0.85
NIPBL-208ENST00000514335 GPATCH11Q8N954 259 aa9.74□□□□□ -0.85
NIPBL-208ENST00000514335 RBM25P49756 843 aaKnown RBP9.73□□□□□ -0.85
NIPBL-208ENST00000514335 MTMR7Q9Y216 660 aa9.73□□□□□ -0.85
NIPBL-208ENST00000514335 MYCNP04198 464 aaPredicted RBP9.73□□□□□ -0.85
NIPBL-208ENST00000514335 FAM9BQ8IZU0 186 aa9.73□□□□□ -0.85
NIPBL-208ENST00000514335 YTHDC1Q96MU7 727 aaKnown RBP9.73□□□□□ -0.85
NIPBL-208ENST00000514335 IQSEC2Q5JU85 1478 aa9.73□□□□□ -0.85
NIPBL-208ENST00000514335 FAM50AQ14320 339 aaKnown RBP9.72□□□□□ -0.85
NIPBL-208ENST00000514335 DNAJC2Q99543 621 aaKnown RBP9.72□□□□□ -0.85
NIPBL-208ENST00000514335 VGLL3A8MV65 326 aa9.72□□□□□ -0.85
NIPBL-208ENST00000514335 AQRO60306 1485 aaKnown RBP eCLIP9.72□□□□□ -0.85
NIPBL-208ENST00000514335 RAD21O60216 631 aa9.72□□□□□ -0.85
NIPBL-208ENST00000514335 MAGI3Q5TCQ9 1506 aa9.71□□□□□ -0.85
NIPBL-208ENST00000514335 KDM5BQ9UGL1 1544 aa9.71□□□□□ -0.86
NIPBL-208ENST00000514335 MAPK8IP2Q13387 824 aaPredicted RBP9.71□□□□□ -0.86
NIPBL-208ENST00000514335 WRNQ14191 1432 aaPredicted RBP eCLIP9.71□□□□□ -0.86
NIPBL-208ENST00000514335 PIAS4Q8N2W9 510 aaPredicted RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms