RNA–Protein interactions for RNA: ENST00000513228.1

SMN1-208, Transcript of survival of motor neuron 1, telomeric, humanhuman

TSL 2

Gene SMN1, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN1-208ENST00000513228 STK25O00506 426 aa6.49□□□□□ -1.37
SMN1-208ENST00000513228 ZFP91Q96JP5 570 aaPredicted RBP6.49□□□□□ -1.37
SMN1-208ENST00000513228 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.49□□□□□ -1.37
SMN1-208ENST00000513228 STK24Q9Y6E0 443 aa6.49□□□□□ -1.37
SMN1-208ENST00000513228 RGL2O15211 777 aa6.48□□□□□ -1.37
SMN1-208ENST00000513228 Q6ZNB5 142 aa6.48□□□□□ -1.37
SMN1-208ENST00000513228 LSM11P83369 360 aaKnown RBP eCLIP6.47□□□□□ -1.37
SMN1-208ENST00000513228 RNF25Q96BH1 459 aaPredicted RBP6.47□□□□□ -1.37
SMN1-208ENST00000513228 BCL11BQ9C0K0 894 aaPredicted RBP6.47□□□□□ -1.37
SMN1-208ENST00000513228 RIMBP2O15034 1052 aa6.46□□□□□ -1.38
SMN1-208ENST00000513228 EFCAB3Q8N7B9 438 aa6.44□□□□□ -1.38
SMN1-208ENST00000513228 CHGAP10645 457 aaKnown RBP6.42□□□□□ -1.38
SMN1-208ENST00000513228 LOC100996750A0A140TA64 210 aa6.4□□□□□ -1.38
SMN1-208ENST00000513228 KRTAP4-6Q9BYQ5 205 aa6.4□□□□□ -1.38
SMN1-208ENST00000513228 AMER1Q5JTC6 1135 aaPredicted RBP6.38□□□□□ -1.39
SMN1-208ENST00000513228 ZSWIM6Q9HCJ5 1215 aa6.38□□□□□ -1.39
SMN1-208ENST00000513228 SOX12O15370 315 aa6.37□□□□□ -1.39
SMN1-208ENST00000513228 NLRP6P59044 892 aa6.37□□□□□ -1.39
SMN1-208ENST00000513228 DPY19L2Q6NUT2 758 aa6.37□□□□□ -1.39
SMN1-208ENST00000513228 PHF8Q9UPP1 1060 aa6.37□□□□□ -1.39
SMN1-208ENST00000513228 IFFO2Q5TF58 517 aa6.35□□□□□ -1.39
SMN1-208ENST00000513228 GPR153Q6NV75 609 aa6.35□□□□□ -1.39
SMN1-208ENST00000513228 BOLA1Q9Y3E2 137 aa6.35□□□□□ -1.39
SMN1-208ENST00000513228 A0A0G2JS52 829 aa6.33□□□□□ -1.4
SMN1-208ENST00000513228 RTN4Q9NQC3 1192 aaKnown RBP6.33□□□□□ -1.4
SMN1-208ENST00000513228 HS6ST3Q8IZP7 471 aa6.32□□□□□ -1.4
SMN1-208ENST00000513228 LCE2BO14633 110 aa6.31□□□□□ -1.4
SMN1-208ENST00000513228 ZNF316A6NFI3 1004 aaPredicted RBP6.29□□□□□ -1.4
SMN1-208ENST00000513228 PBX2P40425 430 aa6.29□□□□□ -1.4
SMN1-208ENST00000513228 TRAF7Q6Q0C0 670 aa6.29□□□□□ -1.4
SMN1-208ENST00000513228 ILDR1Q86SU0 546 aaPredicted RBP6.29□□□□□ -1.4
SMN1-208ENST00000513228 MFRPQ9BY79 579 aa6.29□□□□□ -1.4
SMN1-208ENST00000513228 MICALL2Q8IY33 904 aa6.28□□□□□ -1.4
SMN1-208ENST00000513228 MS4A4AQ96JQ5 239 aa6.28□□□□□ -1.4
SMN1-208ENST00000513228 POTEEQ6S8J3 1075 aa6.27□□□□□ -1.41
SMN1-208ENST00000513228 RYDENQ9NUL5 291 aaKnown RBP6.27□□□□□ -1.41
SMN1-208ENST00000513228 FBXO22Q8NEZ5 403 aa6.26□□□□□ -1.41
SMN1-208ENST00000513228 ZNF775Q96BV0 537 aaPredicted RBP6.25□□□□□ -1.41
SMN1-208ENST00000513228 ARSIQ5FYB1 569 aa6.24□□□□□ -1.41
SMN1-208ENST00000513228 AXIN2Q9Y2T1 843 aa6.24□□□□□ -1.41
SMN1-208ENST00000513228 ADGRD1Q6QNK2 874 aa6.23□□□□□ -1.41
SMN1-208ENST00000513228 TMC2Q8TDI7 906 aa6.23□□□□□ -1.41
SMN1-208ENST00000513228 KCTD12Q96CX2 325 aaKnown RBP6.23□□□□□ -1.41
SMN1-208ENST00000513228 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.23□□□□□ -1.41
SMN1-208ENST00000513228 LAPTM4AQ15012 233 aa6.22□□□□□ -1.41
SMN1-208ENST00000513228 PPP1R37O75864 691 aa6.21□□□□□ -1.42
SMN1-208ENST00000513228 NKX1-1Q15270 411 aaPredicted RBP6.2□□□□□ -1.42
SMN1-208ENST00000513228 ZNF787Q6DD87 383 aa6.2□□□□□ -1.42
SMN1-208ENST00000513228 CFAP44Q96MT7 982 aa6.19□□□□□ -1.42
SMN1-208ENST00000513228 KHSRPQ92945 711 aaKnown RBP eCLIP6.18□□□□□ -1.42
SMN1-208ENST00000513228 BBXQ8WY36 941 aaPredicted RBP6.17□□□□□ -1.42
SMN1-208ENST00000513228 C2orf72A6NCS6 295 aa6.16□□□□□ -1.42
SMN1-208ENST00000513228 HRO43593 1189 aa6.16□□□□□ -1.42
SMN1-208ENST00000513228 PTPN5P54829 565 aa6.16□□□□□ -1.42
SMN1-208ENST00000513228 TMEM92Q6UXU6 159 aa6.16□□□□□ -1.42
SMN1-208ENST00000513228 PAXIP1Q6ZW49 1069 aaPredicted RBP6.16□□□□□ -1.42
SMN1-208ENST00000513228 GTPBP6O43824 516 aaPredicted RBP6.15□□□□□ -1.42
SMN1-208ENST00000513228 SPRYD3Q8NCJ5 442 aa6.15□□□□□ -1.42
SMN1-208ENST00000513228 DNAJC5Q9H3Z4 198 aa6.14□□□□□ -1.43
SMN1-208ENST00000513228 TK2O00142 265 aa6.13□□□□□ -1.43
SMN1-208ENST00000513228 GFRA3O60609 400 aa6.11□□□□□ -1.43
SMN1-208ENST00000513228 ARHGAP33O14559 1287 aa6.1□□□□□ -1.43
SMN1-208ENST00000513228 PDE4AP27815 886 aa6.1□□□□□ -1.43
SMN1-208ENST00000513228 PLPP6Q8IY26 295 aa6.1□□□□□ -1.43
SMN1-208ENST00000513228 LARP6Q9BRS8 491 aaKnown RBP6.1□□□□□ -1.43
SMN1-208ENST00000513228 GPHNQ9NQX3 736 aaPredicted RBP6.09□□□□□ -1.43
SMN1-208ENST00000513228 DSG2Q14126 1118 aa6.08□□□□□ -1.44
SMN1-208ENST00000513228 UPF1Q92900 1129 aaKnown RBP eCLIP6.08□□□□□ -1.44
SMN1-208ENST00000513228 STAC3Q96MF2 364 aa6.08□□□□□ -1.44
SMN1-208ENST00000513228 TBC1D12O60347 775 aa6.07□□□□□ -1.44
SMN1-208ENST00000513228 KIF3CO14782 793 aa6.06□□□□□ -1.44
SMN1-208ENST00000513228 PPP1R15BQ5SWA1 713 aa6.06□□□□□ -1.44
SMN1-208ENST00000513228 DDX27Q96GQ7 796 aaKnown RBP6.06□□□□□ -1.44
SMN1-208ENST00000513228 LHX6Q9UPM6 363 aa6.06□□□□□ -1.44
SMN1-208ENST00000513228 NUDT7P0C024 238 aa6.05□□□□□ -1.44
SMN1-208ENST00000513228 FOXK1P85037 733 aa6.05□□□□□ -1.44
SMN1-208ENST00000513228 WDR70Q9NW82 654 aa6.05□□□□□ -1.44
SMN1-208ENST00000513228 PCDHGA4Q9Y5G9 962 aa6.04□□□□□ -1.44
SMN1-208ENST00000513228 DMRTA1Q5VZB9 504 aa6.03□□□□□ -1.44
SMN1-208ENST00000513228 NCKAP5LQ9HCH0 1330 aa6.02□□□□□ -1.45
SMN1-208ENST00000513228 NRG2O14511 850 aaPredicted RBP6.02□□□□□ -1.45
SMN1-208ENST00000513228 MAP3K9P80192 1104 aa6.02□□□□□ -1.45
SMN1-208ENST00000513228 CADPS2Q86UW7 1296 aa6.02□□□□□ -1.45
SMN1-208ENST00000513228 CRISPLD2Q9H0B8 497 aa6.02□□□□□ -1.45
SMN1-208ENST00000513228 THSD4Q6ZMP0 1018 aa6□□□□□ -1.45
SMN1-208ENST00000513228 SLC34A2O95436 690 aa5.99□□□□□ -1.45
SMN1-208ENST00000513228 PSEN2P49810 448 aa5.99□□□□□ -1.45
SMN1-208ENST00000513228 STK17AQ9UEE5 414 aa5.99□□□□□ -1.45
SMN1-208ENST00000513228 PSDA5PKW4 1024 aaPredicted RBP5.97□□□□□ -1.45
SMN1-208ENST00000513228 LCE2AQ5TA79 106 aaPredicted RBP5.97□□□□□ -1.45
SMN1-208ENST00000513228 PTCD2Q8WV60 388 aaKnown RBP5.97□□□□□ -1.45
SMN1-208ENST00000513228 KCNH8Q96L42 1107 aa5.97□□□□□ -1.45
SMN1-208ENST00000513228 ITGBL1O95965 494 aaPredicted RBP5.96□□□□□ -1.46
SMN1-208ENST00000513228 HAP1P54257 671 aaPredicted RBP5.96□□□□□ -1.46
SMN1-208ENST00000513228 SUZ12Q15022 739 aaKnown RBP5.96□□□□□ -1.46
SMN1-208ENST00000513228 TREML4Q6UXN2 200 aa5.96□□□□□ -1.46
SMN1-208ENST00000513228 TSHZ2Q9NRE2 1034 aa5.96□□□□□ -1.46
SMN1-208ENST00000513228 PPP4R3BQ5MIZ7 849 aa5.95□□□□□ -1.46
SMN1-208ENST00000513228 ZNF454Q8N9F8 522 aa5.95□□□□□ -1.46
SMN1-208ENST00000513228 EVI5O60447 810 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms