RNA–Protein interactions for RNA: ENST00000512711.1

PDGFC-208, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 522 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-208ENST00000512711 HOXB3P14651 431 aaPredicted RBP7.29□□□□□ -1.24
PDGFC-208ENST00000512711 NLRP6P59044 892 aa7.29□□□□□ -1.24
PDGFC-208ENST00000512711 MICALL2Q8IY33 904 aa7.29□□□□□ -1.24
PDGFC-208ENST00000512711 PPP1R37O75864 691 aa7.28□□□□□ -1.24
PDGFC-208ENST00000512711 CHGAP10645 457 aaKnown RBP7.28□□□□□ -1.24
PDGFC-208ENST00000512711 G3V3G9 751 aa7.27□□□□□ -1.25
PDGFC-208ENST00000512711 NKX1-1Q15270 411 aaPredicted RBP7.25□□□□□ -1.25
PDGFC-208ENST00000512711 HS6ST3Q8IZP7 471 aa7.25□□□□□ -1.25
PDGFC-208ENST00000512711 HOXB1P14653 301 aaPredicted RBP7.24□□□□□ -1.25
PDGFC-208ENST00000512711 ZNF710Q8N1W2 664 aa7.23□□□□□ -1.25
PDGFC-208ENST00000512711 ERBB3P21860 1342 aa7.21□□□□□ -1.26
PDGFC-208ENST00000512711 DOK7Q18PE1 504 aa7.2□□□□□ -1.26
PDGFC-208ENST00000512711 DCAF8L2P0C7V8 631 aa7.18□□□□□ -1.26
PDGFC-208ENST00000512711 DNAJC5Q9H3Z4 198 aa7.17□□□□□ -1.26
PDGFC-208ENST00000512711 RTN4Q9NQC3 1192 aaKnown RBP7.17□□□□□ -1.26
PDGFC-208ENST00000512711 C2orf72A6NCS6 295 aa7.16□□□□□ -1.26
PDGFC-208ENST00000512711 VARS2Q5ST30 1063 aaKnown RBP7.16□□□□□ -1.26
PDGFC-208ENST00000512711 KIF3CO14782 793 aa7.15□□□□□ -1.26
PDGFC-208ENST00000512711 RIMBP2O15034 1052 aa7.15□□□□□ -1.26
PDGFC-208ENST00000512711 GTPBP6O43824 516 aaPredicted RBP7.13□□□□□ -1.27
PDGFC-208ENST00000512711 GPR153Q6NV75 609 aa7.13□□□□□ -1.27
PDGFC-208ENST00000512711 ZNF687Q8N1G0 1237 aa7.12□□□□□ -1.27
PDGFC-208ENST00000512711 KHSRPQ92945 711 aaKnown RBP eCLIP7.11□□□□□ -1.27
PDGFC-208ENST00000512711 ZSWIM6Q9HCJ5 1215 aa7.11□□□□□ -1.27
PDGFC-208ENST00000512711 ARSIQ5FYB1 569 aa7.1□□□□□ -1.27
PDGFC-208ENST00000512711 RNF166Q96A37 237 aaPredicted RBP7.1□□□□□ -1.27
PDGFC-208ENST00000512711 TMC2Q8TDI7 906 aa7.08□□□□□ -1.28
PDGFC-208ENST00000512711 MYT1LQ9UL68 1186 aa7.08□□□□□ -1.28
PDGFC-208ENST00000512711 AMER1Q5JTC6 1135 aaPredicted RBP7.07□□□□□ -1.28
PDGFC-208ENST00000512711 DSG2Q14126 1118 aa7.05□□□□□ -1.28
PDGFC-208ENST00000512711 GPHNQ9NQX3 736 aaPredicted RBP7.05□□□□□ -1.28
PDGFC-208ENST00000512711 ANKRD13DQ6ZTN6 518 aa7.04□□□□□ -1.28
PDGFC-208ENST00000512711 FOXK1P85037 733 aa7.03□□□□□ -1.28
PDGFC-208ENST00000512711 PLPP6Q8IY26 295 aa7.03□□□□□ -1.28
PDGFC-208ENST00000512711 NCKAP5LQ9HCH0 1330 aa7.02□□□□□ -1.28
PDGFC-208ENST00000512711 ZNF316A6NFI3 1004 aaPredicted RBP7.02□□□□□ -1.29
PDGFC-208ENST00000512711 CADPS2Q86UW7 1296 aa7.02□□□□□ -1.29
PDGFC-208ENST00000512711 SLC34A2O95436 690 aa7.01□□□□□ -1.29
PDGFC-208ENST00000512711 NUDT7P0C024 238 aa7.01□□□□□ -1.29
PDGFC-208ENST00000512711 CRISPLD2Q9H0B8 497 aa7.01□□□□□ -1.29
PDGFC-208ENST00000512711 RYDENQ9NUL5 291 aaKnown RBP7.01□□□□□ -1.29
PDGFC-208ENST00000512711 PCDHGA4Q9Y5G9 962 aa7.01□□□□□ -1.29
PDGFC-208ENST00000512711 BBXQ8WY36 941 aaPredicted RBP7□□□□□ -1.29
PDGFC-208ENST00000512711 PTGER2P43116 358 aa6.99□□□□□ -1.29
PDGFC-208ENST00000512711 KDM4FA0A1W2PPD8 638 aa6.98□□□□□ -1.29
PDGFC-208ENST00000512711 PTCD2Q8WV60 388 aaKnown RBP6.98□□□□□ -1.29
PDGFC-208ENST00000512711 LSM11P83369 360 aaKnown RBP eCLIP6.97□□□□□ -1.29
PDGFC-208ENST00000512711 LARP6Q9BRS8 491 aaKnown RBP6.97□□□□□ -1.29
PDGFC-208ENST00000512711 LHX6Q9UPM6 363 aa6.97□□□□□ -1.29
PDGFC-208ENST00000512711 PDE4AP27815 886 aa6.96□□□□□ -1.3
PDGFC-208ENST00000512711 POTEEQ6S8J3 1075 aa6.95□□□□□ -1.3
PDGFC-208ENST00000512711 AXIN2Q9Y2T1 843 aa6.95□□□□□ -1.3
PDGFC-208ENST00000512711 PPP1R15BQ5SWA1 713 aa6.94□□□□□ -1.3
PDGFC-208ENST00000512711 UPF1Q92900 1129 aaKnown RBP eCLIP6.94□□□□□ -1.3
PDGFC-208ENST00000512711 SPRYD3Q8NCJ5 442 aa6.93□□□□□ -1.3
PDGFC-208ENST00000512711 OXER1Q8TDS5 423 aa6.93□□□□□ -1.3
PDGFC-208ENST00000512711 PAXIP1Q6ZW49 1069 aaPredicted RBP6.92□□□□□ -1.3
PDGFC-208ENST00000512711 DDX27Q96GQ7 796 aaKnown RBP6.91□□□□□ -1.3
PDGFC-208ENST00000512711 CFAP44Q96MT7 982 aa6.91□□□□□ -1.3
PDGFC-208ENST00000512711 PBX2P40425 430 aa6.9□□□□□ -1.3
PDGFC-208ENST00000512711 MFSD10Q14728 455 aa6.9□□□□□ -1.3
PDGFC-208ENST00000512711 EMILIN3Q9NT22 766 aa6.9□□□□□ -1.3
PDGFC-208ENST00000512711 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.89□□□□□ -1.31
PDGFC-208ENST00000512711 TBC1D12O60347 775 aa6.88□□□□□ -1.31
PDGFC-208ENST00000512711 ARHGAP33O14559 1287 aa6.86□□□□□ -1.31
PDGFC-208ENST00000512711 ADGRD1Q6QNK2 874 aa6.85□□□□□ -1.31
PDGFC-208ENST00000512711 ANO8Q9HCE9 1232 aaPredicted RBP6.85□□□□□ -1.31
PDGFC-208ENST00000512711 PLA2G2EQ9NZK7 142 aa6.85□□□□□ -1.31
PDGFC-208ENST00000512711 HCSTQ9UBK5 93 aa6.85□□□□□ -1.31
PDGFC-208ENST00000512711 EVI5O60447 810 aa6.84□□□□□ -1.31
PDGFC-208ENST00000512711 PSEN2P49810 448 aa6.84□□□□□ -1.31
PDGFC-208ENST00000512711 MAP3K9P80192 1104 aa6.84□□□□□ -1.31
PDGFC-208ENST00000512711 CAMK2BQ13554 666 aa6.82□□□□□ -1.32
PDGFC-208ENST00000512711 DMRTA1Q5VZB9 504 aa6.82□□□□□ -1.32
PDGFC-208ENST00000512711 PSDA5PKW4 1024 aaPredicted RBP6.81□□□□□ -1.32
PDGFC-208ENST00000512711 ZNF454Q8N9F8 522 aa6.81□□□□□ -1.32
PDGFC-208ENST00000512711 TSHZ2Q9NRE2 1034 aa6.81□□□□□ -1.32
PDGFC-208ENST00000512711 HRO43593 1189 aa6.8□□□□□ -1.32
PDGFC-208ENST00000512711 FOSBP53539 338 aa6.8□□□□□ -1.32
PDGFC-208ENST00000512711 TK2O00142 265 aa6.79□□□□□ -1.32
PDGFC-208ENST00000512711 DPYSL4O14531 572 aa6.79□□□□□ -1.32
PDGFC-208ENST00000512711 PPP4R3BQ5MIZ7 849 aa6.79□□□□□ -1.32
PDGFC-208ENST00000512711 KCNK17Q96T54 332 aa6.78□□□□□ -1.32
PDGFC-208ENST00000512711 ADAM33Q9BZ11 813 aa6.77□□□□□ -1.33
PDGFC-208ENST00000512711 PCDHGA10Q9Y5H3 936 aa6.77□□□□□ -1.33
PDGFC-208ENST00000512711 KCTD12Q96CX2 325 aaKnown RBP6.76□□□□□ -1.33
PDGFC-208ENST00000512711 ZDHHC16Q969W1 377 aa6.75□□□□□ -1.33
PDGFC-208ENST00000512711 BCL2L12Q9HB09 334 aa6.75□□□□□ -1.33
PDGFC-208ENST00000512711 E2F4Q16254 413 aa6.74□□□□□ -1.33
PDGFC-208ENST00000512711 JPH4Q96JJ6 628 aa6.74□□□□□ -1.33
PDGFC-208ENST00000512711 DDX12PQ92771 950 aa6.73□□□□□ -1.33
PDGFC-208ENST00000512711 STAC3Q96MF2 364 aa6.73□□□□□ -1.33
PDGFC-208ENST00000512711 WDR70Q9NW82 654 aa6.73□□□□□ -1.33
PDGFC-208ENST00000512711 VPS9D1Q9Y2B5 631 aa6.73□□□□□ -1.33
PDGFC-208ENST00000512711 COL9A1P20849 921 aa6.71□□□□□ -1.34
PDGFC-208ENST00000512711 PTPN5P54829 565 aa6.71□□□□□ -1.34
PDGFC-208ENST00000512711 PHF14O94880 888 aa6.7□□□□□ -1.34
PDGFC-208ENST00000512711 PTPREP23469 700 aa6.7□□□□□ -1.34
PDGFC-208ENST00000512711 ZBED2Q9BTP6 218 aa6.7□□□□□ -1.34
PDGFC-208ENST00000512711 PRIM1P49642 420 aaKnown RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms