RNA–Protein interactions for RNA: ENST00000512380.1

PDLIM3-208, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 764 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-208ENST00000512380 FBXO22Q8NEZ5 403 aa13.23□□□□□ -0.29
PDLIM3-208ENST00000512380 MFRPQ9BY79 579 aa13.22□□□□□ -0.29
PDLIM3-208ENST00000512380 TSHZ2Q9NRE2 1034 aa13.22□□□□□ -0.29
PDLIM3-208ENST00000512380 POTEGQ6S5H5 508 aa13.21□□□□□ -0.29
PDLIM3-208ENST00000512380 MICALL2Q8IY33 904 aa13.21□□□□□ -0.29
PDLIM3-208ENST00000512380 SNPHO15079 494 aa13.19□□□□□ -0.3
PDLIM3-208ENST00000512380 SPRYD3Q8NCJ5 442 aa13.19□□□□□ -0.3
PDLIM3-208ENST00000512380 HS6ST3Q8IZP7 471 aa13.18□□□□□ -0.3
PDLIM3-208ENST00000512380 ST18O60284 1047 aa13.15□□□□□ -0.3
PDLIM3-208ENST00000512380 NBR1Q14596 966 aa13.13□□□□□ -0.31
PDLIM3-208ENST00000512380 DAXXQ9UER7 740 aaPredicted RBP13.12□□□□□ -0.31
PDLIM3-208ENST00000512380 GTF3C3Q9Y5Q9 886 aa13.12□□□□□ -0.31
PDLIM3-208ENST00000512380 ARXQ96QS3 562 aa13.09□□□□□ -0.31
PDLIM3-208ENST00000512380 CHGAP10645 457 aaKnown RBP13.08□□□□□ -0.32
PDLIM3-208ENST00000512380 TMEM92Q6UXU6 159 aa13.08□□□□□ -0.32
PDLIM3-208ENST00000512380 DNAJC5Q9H3Z4 198 aa13.07□□□□□ -0.32
PDLIM3-208ENST00000512380 PCDH10Q9P2E7 1040 aa13.04□□□□□ -0.32
PDLIM3-208ENST00000512380 HOXB3P14651 431 aaPredicted RBP13.03□□□□□ -0.32
PDLIM3-208ENST00000512380 DOK7Q18PE1 504 aa12.98□□□□□ -0.33
PDLIM3-208ENST00000512380 PPP1R37O75864 691 aa12.97□□□□□ -0.33
PDLIM3-208ENST00000512380 NKX1-1Q15270 411 aaPredicted RBP12.97□□□□□ -0.33
PDLIM3-208ENST00000512380 ERICH6Q7L0X2 663 aa12.97□□□□□ -0.33
PDLIM3-208ENST00000512380 MARVELD3Q96A59 401 aa12.95□□□□□ -0.34
PDLIM3-208ENST00000512380 KIF3CO14782 793 aa12.94□□□□□ -0.34
PDLIM3-208ENST00000512380 ZNF710Q8N1W2 664 aa12.92□□□□□ -0.34
PDLIM3-208ENST00000512380 RYDENQ9NUL5 291 aaKnown RBP12.92□□□□□ -0.34
PDLIM3-208ENST00000512380 RIMBP2O15034 1052 aa12.91□□□□□ -0.34
PDLIM3-208ENST00000512380 EMP3P54852 163 aa12.91□□□□□ -0.34
PDLIM3-208ENST00000512380 C2orf72A6NCS6 295 aa12.9□□□□□ -0.34
PDLIM3-208ENST00000512380 HOXB1P14653 301 aaPredicted RBP12.9□□□□□ -0.34
PDLIM3-208ENST00000512380 CDAN1Q8IWY9 1227 aa12.89□□□□□ -0.35
PDLIM3-208ENST00000512380 ZSWIM6Q9HCJ5 1215 aa12.89□□□□□ -0.35
PDLIM3-208ENST00000512380 TMC2Q8TDI7 906 aa12.85□□□□□ -0.35
PDLIM3-208ENST00000512380 TMEM132AQ24JP5 1023 aa12.84□□□□□ -0.35
PDLIM3-208ENST00000512380 HOMEZQ8IX15 550 aa12.82□□□□□ -0.36
PDLIM3-208ENST00000512380 PLSCR2Q9NRY7 297 aa12.82□□□□□ -0.36
PDLIM3-208ENST00000512380 GPR153Q6NV75 609 aa12.81□□□□□ -0.36
PDLIM3-208ENST00000512380 HS3ST6Q96QI5 342 aa12.81□□□□□ -0.36
PDLIM3-208ENST00000512380 FAM205CA6NFA0 338 aa12.8□□□□□ -0.36
PDLIM3-208ENST00000512380 GTPBP6O43824 516 aaPredicted RBP12.79□□□□□ -0.36
PDLIM3-208ENST00000512380 POTEB3A0JP26 581 aa12.78□□□□□ -0.36
PDLIM3-208ENST00000512380 POTEBQ6S5H4 581 aa12.78□□□□□ -0.36
PDLIM3-208ENST00000512380 C14orf37Q86TY3 774 aa12.77□□□□□ -0.37
PDLIM3-208ENST00000512380 SLC34A2O95436 690 aa12.76□□□□□ -0.37
PDLIM3-208ENST00000512380 GPHNQ9NQX3 736 aaPredicted RBP12.76□□□□□ -0.37
PDLIM3-208ENST00000512380 FOXK1P85037 733 aa12.74□□□□□ -0.37
PDLIM3-208ENST00000512380 ERBB3P21860 1342 aa12.73□□□□□ -0.37
PDLIM3-208ENST00000512380 ARSIQ5FYB1 569 aa12.73□□□□□ -0.37
PDLIM3-208ENST00000512380 CRISPLD2Q9H0B8 497 aa12.7□□□□□ -0.38
PDLIM3-208ENST00000512380 VARS2Q5ST30 1063 aaKnown RBP12.69□□□□□ -0.38
PDLIM3-208ENST00000512380 DSG2Q14126 1118 aa12.68□□□□□ -0.38
PDLIM3-208ENST00000512380 KHSRPQ92945 711 aaKnown RBP eCLIP12.68□□□□□ -0.38
PDLIM3-208ENST00000512380 KRTAP3-3Q9BYR6 98 aa12.68□□□□□ -0.38
PDLIM3-208ENST00000512380 KRTAP3-2Q9BYR7 98 aa12.68□□□□□ -0.38
PDLIM3-208ENST00000512380 PCDHGA4Q9Y5G9 962 aa12.68□□□□□ -0.38
PDLIM3-208ENST00000512380 PLPP6Q8IY26 295 aa12.67□□□□□ -0.38
PDLIM3-208ENST00000512380 PTCD2Q8WV60 388 aaKnown RBP12.64□□□□□ -0.39
PDLIM3-208ENST00000512380 NCKAP5LQ9HCH0 1330 aa12.63□□□□□ -0.39
PDLIM3-208ENST00000512380 ZNF316A6NFI3 1004 aaPredicted RBP12.63□□□□□ -0.39
PDLIM3-208ENST00000512380 NUDT7P0C024 238 aa12.63□□□□□ -0.39
PDLIM3-208ENST00000512380 ZNF687Q8N1G0 1237 aa12.61□□□□□ -0.39
PDLIM3-208ENST00000512380 PDE4AP27815 886 aa12.6□□□□□ -0.39
PDLIM3-208ENST00000512380 PPP1R15BQ5SWA1 713 aa12.59□□□□□ -0.39
PDLIM3-208ENST00000512380 SPNS2Q8IVW8 549 aa12.59□□□□□ -0.39
PDLIM3-208ENST00000512380 KDM4FA0A1W2PPD8 638 aa12.58□□□□□ -0.4
PDLIM3-208ENST00000512380 LHX6Q9UPM6 363 aa12.56□□□□□ -0.4
PDLIM3-208ENST00000512380 MFSD10Q14728 455 aa12.55□□□□□ -0.4
PDLIM3-208ENST00000512380 OXER1Q8TDS5 423 aa12.54□□□□□ -0.4
PDLIM3-208ENST00000512380 CADPS2Q86UW7 1296 aa12.53□□□□□ -0.4
PDLIM3-208ENST00000512380 DDX27Q96GQ7 796 aaKnown RBP12.53□□□□□ -0.4
PDLIM3-208ENST00000512380 TBC1D12O60347 775 aa12.52□□□□□ -0.41
PDLIM3-208ENST00000512380 MMRN1Q13201 1228 aa12.52□□□□□ -0.41
PDLIM3-208ENST00000512380 LARP6Q9BRS8 491 aaKnown RBP12.52□□□□□ -0.41
PDLIM3-208ENST00000512380 PSDA5PKW4 1024 aaPredicted RBP12.5□□□□□ -0.41
PDLIM3-208ENST00000512380 PBX2P40425 430 aa12.48□□□□□ -0.41
PDLIM3-208ENST00000512380 UPF1Q92900 1129 aaKnown RBP eCLIP12.47□□□□□ -0.41
PDLIM3-208ENST00000512380 SUPT5HO00267 1087 aaKnown RBP12.44□□□□□ -0.42
PDLIM3-208ENST00000512380 POTEEQ6S8J3 1075 aa12.42□□□□□ -0.42
PDLIM3-208ENST00000512380 LSM11P83369 360 aaKnown RBP eCLIP12.41□□□□□ -0.42
PDLIM3-208ENST00000512380 P3H3Q8IVL6 736 aa12.41□□□□□ -0.42
PDLIM3-208ENST00000512380 LMOD2Q6P5Q4 547 aa12.4□□□□□ -0.42
PDLIM3-208ENST00000512380 PPP4R3BQ5MIZ7 849 aa12.39□□□□□ -0.43
PDLIM3-208ENST00000512380 EMILIN3Q9NT22 766 aa12.39□□□□□ -0.43
PDLIM3-208ENST00000512380 BRPF1P55201 1214 aaPredicted RBP12.38□□□□□ -0.43
PDLIM3-208ENST00000512380 PTGER2P43116 358 aa12.37□□□□□ -0.43
PDLIM3-208ENST00000512380 CAMK2BQ13554 666 aa12.37□□□□□ -0.43
PDLIM3-208ENST00000512380 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.36□□□□□ -0.43
PDLIM3-208ENST00000512380 ANO8Q9HCE9 1232 aaPredicted RBP12.36□□□□□ -0.43
PDLIM3-208ENST00000512380 AXIN2Q9Y2T1 843 aa12.36□□□□□ -0.43
PDLIM3-208ENST00000512380 ARHGAP33O14559 1287 aa12.35□□□□□ -0.43
PDLIM3-208ENST00000512380 EVI5O60447 810 aa12.35□□□□□ -0.43
PDLIM3-208ENST00000512380 ANKRD13DQ6ZTN6 518 aa12.34□□□□□ -0.43
PDLIM3-208ENST00000512380 MAP3K9P80192 1104 aa12.32□□□□□ -0.44
PDLIM3-208ENST00000512380 FOSBP53539 338 aa12.31□□□□□ -0.44
PDLIM3-208ENST00000512380 ZNF454Q8N9F8 522 aa12.31□□□□□ -0.44
PDLIM3-208ENST00000512380 JPH4Q96JJ6 628 aa12.31□□□□□ -0.44
PDLIM3-208ENST00000512380 PODXL2Q9NZ53 605 aa12.31□□□□□ -0.44
PDLIM3-208ENST00000512380 MYT1LQ9UL68 1186 aa12.31□□□□□ -0.44
PDLIM3-208ENST00000512380 RNF166Q96A37 237 aaPredicted RBP12.29□□□□□ -0.44
PDLIM3-208ENST00000512380 NEUROD2Q15784 382 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms