RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 DOK7Q18PE1 504 aa7.18□□□□□ -1.26
LIMCH1-212ENST00000511424 POTEGQ6S5H5 508 aa7.18□□□□□ -1.26
LIMCH1-212ENST00000511424 TMEM92Q6UXU6 159 aa7.18□□□□□ -1.26
LIMCH1-212ENST00000511424 BBXQ8WY36 941 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-212ENST00000511424 C2orf72A6NCS6 295 aa7.16□□□□□ -1.26
LIMCH1-212ENST00000511424 GTPBP6O43824 516 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-212ENST00000511424 MARVELD3Q96A59 401 aa7.15□□□□□ -1.26
LIMCH1-212ENST00000511424 CFAP44Q96MT7 982 aa7.14□□□□□ -1.27
LIMCH1-212ENST00000511424 EMP3P54852 163 aa7.13□□□□□ -1.27
LIMCH1-212ENST00000511424 SPRYD3Q8NCJ5 442 aa7.13□□□□□ -1.27
LIMCH1-212ENST00000511424 LCE2DQ5TA82 110 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-212ENST00000511424 HOXB3P14651 431 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-212ENST00000511424 PAXIP1Q6ZW49 1069 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-212ENST00000511424 KIF3CO14782 793 aa7.09□□□□□ -1.27
LIMCH1-212ENST00000511424 GPHNQ9NQX3 736 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-212ENST00000511424 FAM205CA6NFA0 338 aa7.08□□□□□ -1.28
LIMCH1-212ENST00000511424 PDE4AP27815 886 aa7.08□□□□□ -1.28
LIMCH1-212ENST00000511424 PLPP6Q8IY26 295 aa7.08□□□□□ -1.28
LIMCH1-212ENST00000511424 ERBB3P21860 1342 aa7.07□□□□□ -1.28
LIMCH1-212ENST00000511424 ARSIQ5FYB1 569 aa7.07□□□□□ -1.28
LIMCH1-212ENST00000511424 LARP6Q9BRS8 491 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-212ENST00000511424 ZSWIM6Q9HCJ5 1215 aa7.07□□□□□ -1.28
LIMCH1-212ENST00000511424 HOXB1P14653 301 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-212ENST00000511424 FOXK1P85037 733 aa7.06□□□□□ -1.28
LIMCH1-212ENST00000511424 DSG2Q14126 1118 aa7.06□□□□□ -1.28
LIMCH1-212ENST00000511424 PPP1R15BQ5SWA1 713 aa7.04□□□□□ -1.28
LIMCH1-212ENST00000511424 CDAN1Q8IWY9 1227 aa7.04□□□□□ -1.28
LIMCH1-212ENST00000511424 DDX27Q96GQ7 796 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-212ENST00000511424 TBC1D12O60347 775 aa7.03□□□□□ -1.28
LIMCH1-212ENST00000511424 KHSRPQ92945 711 aaKnown RBP eCLIP7.03□□□□□ -1.28
LIMCH1-212ENST00000511424 HS3ST6Q96QI5 342 aa7.03□□□□□ -1.28
LIMCH1-212ENST00000511424 CRISPLD2Q9H0B8 497 aa7.03□□□□□ -1.28
LIMCH1-212ENST00000511424 PCDH10Q9P2E7 1040 aa7.03□□□□□ -1.28
LIMCH1-212ENST00000511424 NCKAP5LQ9HCH0 1330 aa7.02□□□□□ -1.28
LIMCH1-212ENST00000511424 NUDT7P0C024 238 aa7.02□□□□□ -1.29
LIMCH1-212ENST00000511424 VARS2Q5ST30 1063 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-212ENST00000511424 GPR153Q6NV75 609 aa7.02□□□□□ -1.29
LIMCH1-212ENST00000511424 UPF1Q92900 1129 aaKnown RBP eCLIP7.02□□□□□ -1.29
LIMCH1-212ENST00000511424 PCDHGA4Q9Y5G9 962 aa7.02□□□□□ -1.29
LIMCH1-212ENST00000511424 CADPS2Q86UW7 1296 aa7.01□□□□□ -1.29
LIMCH1-212ENST00000511424 PLSCR2Q9NRY7 297 aa7.01□□□□□ -1.29
LIMCH1-212ENST00000511424 SLC34A2O95436 690 aa7□□□□□ -1.29
LIMCH1-212ENST00000511424 WDR70Q9NW82 654 aa6.99□□□□□ -1.29
LIMCH1-212ENST00000511424 ZNF316A6NFI3 1004 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-212ENST00000511424 PTCD2Q8WV60 388 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-212ENST00000511424 MAP3K9P80192 1104 aa6.96□□□□□ -1.3
LIMCH1-212ENST00000511424 LHX6Q9UPM6 363 aa6.96□□□□□ -1.3
LIMCH1-212ENST00000511424 POTEB3A0JP26 581 aa6.94□□□□□ -1.3
LIMCH1-212ENST00000511424 MFSD10Q14728 455 aa6.94□□□□□ -1.3
LIMCH1-212ENST00000511424 POTEBQ6S5H4 581 aa6.94□□□□□ -1.3
LIMCH1-212ENST00000511424 OXER1Q8TDS5 423 aa6.93□□□□□ -1.3
LIMCH1-212ENST00000511424 PSDA5PKW4 1024 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-212ENST00000511424 ZNF687Q8N1G0 1237 aa6.91□□□□□ -1.3
LIMCH1-212ENST00000511424 EVI5O60447 810 aa6.9□□□□□ -1.3
LIMCH1-212ENST00000511424 PPP4R3BQ5MIZ7 849 aa6.9□□□□□ -1.3
LIMCH1-212ENST00000511424 KCNH8Q96L42 1107 aa6.9□□□□□ -1.3
LIMCH1-212ENST00000511424 TSHZ2Q9NRE2 1034 aa6.9□□□□□ -1.3
LIMCH1-212ENST00000511424 PLCB2Q00722 1185 aa6.89□□□□□ -1.31
LIMCH1-212ENST00000511424 ANKRD13DQ6ZTN6 518 aa6.89□□□□□ -1.31
LIMCH1-212ENST00000511424 ZNF454Q8N9F8 522 aa6.89□□□□□ -1.31
LIMCH1-212ENST00000511424 EMILIN3Q9NT22 766 aa6.89□□□□□ -1.31
LIMCH1-212ENST00000511424 DPYSL4O14531 572 aa6.88□□□□□ -1.31
LIMCH1-212ENST00000511424 HAP1P54257 671 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-212ENST00000511424 E2F4Q16254 413 aa6.87□□□□□ -1.31
LIMCH1-212ENST00000511424 AXIN2Q9Y2T1 843 aa6.87□□□□□ -1.31
LIMCH1-212ENST00000511424 KRTAP3-3Q9BYR6 98 aa6.86□□□□□ -1.31
LIMCH1-212ENST00000511424 KRTAP3-2Q9BYR7 98 aa6.86□□□□□ -1.31
LIMCH1-212ENST00000511424 PBX2P40425 430 aa6.85□□□□□ -1.31
LIMCH1-212ENST00000511424 KDM4FA0A1W2PPD8 638 aa6.84□□□□□ -1.31
LIMCH1-212ENST00000511424 CAMK2BQ13554 666 aa6.84□□□□□ -1.31
LIMCH1-212ENST00000511424 KCNK17Q96T54 332 aa6.84□□□□□ -1.31
LIMCH1-212ENST00000511424 ARHGAP33O14559 1287 aa6.83□□□□□ -1.32
LIMCH1-212ENST00000511424 SPNS2Q8IVW8 549 aa6.83□□□□□ -1.32
LIMCH1-212ENST00000511424 LSM11P83369 360 aaKnown RBP eCLIP6.82□□□□□ -1.32
LIMCH1-212ENST00000511424 ZDHHC16Q969W1 377 aa6.82□□□□□ -1.32
LIMCH1-212ENST00000511424 JPH4Q96JJ6 628 aa6.82□□□□□ -1.32
LIMCH1-212ENST00000511424 STAC3Q96MF2 364 aa6.82□□□□□ -1.32
LIMCH1-212ENST00000511424 PSEN2P49810 448 aa6.81□□□□□ -1.32
LIMCH1-212ENST00000511424 DDX12PQ92771 950 aa6.81□□□□□ -1.32
LIMCH1-212ENST00000511424 ANO8Q9HCE9 1232 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-212ENST00000511424 PTPREP23469 700 aa6.8□□□□□ -1.32
LIMCH1-212ENST00000511424 FOSBP53539 338 aa6.8□□□□□ -1.32
LIMCH1-212ENST00000511424 MMRN1Q13201 1228 aa6.79□□□□□ -1.32
LIMCH1-212ENST00000511424 GRXCR2A6NFK2 248 aa6.78□□□□□ -1.32
LIMCH1-212ENST00000511424 SPDYE16A6NNV3 312 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-212ENST00000511424 TYW1BQ6NUM6 668 aa6.78□□□□□ -1.32
LIMCH1-212ENST00000511424 POTEEQ6S8J3 1075 aa6.78□□□□□ -1.32
LIMCH1-212ENST00000511424 RBM33Q96EV2 1170 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-212ENST00000511424 BCL2L12Q9HB09 334 aa6.78□□□□□ -1.32
LIMCH1-212ENST00000511424 PCDHGA10Q9Y5H3 936 aa6.78□□□□□ -1.32
LIMCH1-212ENST00000511424 PHF14O94880 888 aa6.77□□□□□ -1.33
LIMCH1-212ENST00000511424 NBR1Q14596 966 aa6.77□□□□□ -1.33
LIMCH1-212ENST00000511424 PDIA6Q15084 440 aa6.77□□□□□ -1.33
LIMCH1-212ENST00000511424 DMRTA1Q5VZB9 504 aa6.77□□□□□ -1.33
LIMCH1-212ENST00000511424 ADGRD1Q6QNK2 874 aa6.77□□□□□ -1.33
LIMCH1-212ENST00000511424 FBXW7Q969H0 707 aa6.77□□□□□ -1.33
LIMCH1-212ENST00000511424 ADAM33Q9BZ11 813 aa6.77□□□□□ -1.33
LIMCH1-212ENST00000511424 MYT1LQ9UL68 1186 aa6.77□□□□□ -1.33
LIMCH1-212ENST00000511424 PTGER2P43116 358 aa6.76□□□□□ -1.33
LIMCH1-212ENST00000511424 P3H3Q8IVL6 736 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms