RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 TIMELESSQ9UNS1 1208 aa8.48□□□□□ -1.05
USP53-204ENST00000507906 E2F4Q16254 413 aa8.47□□□□□ -1.05
USP53-204ENST00000507906 ARHGEF1Q92888 912 aaKnown RBP8.47□□□□□ -1.05
USP53-204ENST00000507906 FAM163AQ96GL9 167 aaPredicted RBP8.47□□□□□ -1.05
USP53-204ENST00000507906 TULP1O00294 542 aaPredicted RBP8.46□□□□□ -1.06
USP53-204ENST00000507906 MAMSTRQ6ZN01 415 aa8.46□□□□□ -1.06
USP53-204ENST00000507906 GTF3C3Q9Y5Q9 886 aa8.45□□□□□ -1.06
USP53-204ENST00000507906 TESPA1A2RU30 521 aaPredicted RBP8.44□□□□□ -1.06
USP53-204ENST00000507906 ZC3H15Q8WU90 426 aaKnown RBP8.43□□□□□ -1.06
USP53-204ENST00000507906 LARP6Q9BRS8 491 aaKnown RBP8.43□□□□□ -1.06
USP53-204ENST00000507906 LCE2DQ5TA82 110 aaPredicted RBP8.42□□□□□ -1.06
USP53-204ENST00000507906 CRISPLD2Q9H0B8 497 aa8.42□□□□□ -1.06
USP53-204ENST00000507906 MFSD10Q14728 455 aa8.41□□□□□ -1.06
USP53-204ENST00000507906 TMEM132AQ24JP5 1023 aa8.41□□□□□ -1.06
USP53-204ENST00000507906 PLCG2P16885 1265 aa8.4□□□□□ -1.06
USP53-204ENST00000507906 BRPF1P55201 1214 aaPredicted RBP8.4□□□□□ -1.06
USP53-204ENST00000507906 IER5LQ5T953 404 aa8.38□□□□□ -1.07
USP53-204ENST00000507906 PDE4AP27815 886 aa8.37□□□□□ -1.07
USP53-204ENST00000507906 SLAIN1Q8ND83 568 aa8.36□□□□□ -1.07
USP53-204ENST00000507906 SLC24A3Q9HC58 644 aa8.36□□□□□ -1.07
USP53-204ENST00000507906 IRX5P78411 483 aaPredicted RBP8.35□□□□□ -1.07
USP53-204ENST00000507906 CAMK2BQ13554 666 aa8.35□□□□□ -1.07
USP53-204ENST00000507906 ILDR1Q86SU0 546 aaPredicted RBP8.34□□□□□ -1.07
USP53-204ENST00000507906 DDX27Q96GQ7 796 aaKnown RBP8.34□□□□□ -1.07
USP53-204ENST00000507906 ARIH1Q9Y4X5 557 aaPredicted RBP8.34□□□□□ -1.07
USP53-204ENST00000507906 ZMYND10O75800 440 aa8.33□□□□□ -1.08
USP53-204ENST00000507906 DPY19L2Q6NUT2 758 aa8.32□□□□□ -1.08
USP53-204ENST00000507906 MLLT3P42568 568 aaPredicted RBP8.31□□□□□ -1.08
USP53-204ENST00000507906 GOLGA2Q08379 1002 aa8.3□□□□□ -1.08
USP53-204ENST00000507906 MKRN3Q13064 507 aaKnown RBP8.3□□□□□ -1.08
USP53-204ENST00000507906 OCEL1Q9H607 264 aa8.3□□□□□ -1.08
USP53-204ENST00000507906 RBM26Q5T8P6 1007 aaKnown RBP8.29□□□□□ -1.08
USP53-204ENST00000507906 EMILIN3Q9NT22 766 aa8.28□□□□□ -1.08
USP53-204ENST00000507906 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.28□□□□□ -1.08
USP53-204ENST00000507906 NEUROD2Q15784 382 aa8.27□□□□□ -1.09
USP53-204ENST00000507906 GPHNQ9NQX3 736 aaPredicted RBP8.27□□□□□ -1.09
USP53-204ENST00000507906 ST18O60284 1047 aa8.26□□□□□ -1.09
USP53-204ENST00000507906 PPP1R15BQ5SWA1 713 aa8.26□□□□□ -1.09
USP53-204ENST00000507906 BARGINQ6ZT62 677 aa8.26□□□□□ -1.09
USP53-204ENST00000507906 PDCD7Q8N8D1 485 aaKnown RBP8.26□□□□□ -1.09
USP53-204ENST00000507906 DSG2Q14126 1118 aa8.24□□□□□ -1.09
USP53-204ENST00000507906 DPYSL4O14531 572 aa8.23□□□□□ -1.09
USP53-204ENST00000507906 SMYD5Q6GMV2 418 aa8.23□□□□□ -1.09
USP53-204ENST00000507906 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.23□□□□□ -1.09
USP53-204ENST00000507906 C3orf67Q6ZVT6 689 aa8.21□□□□□ -1.1
USP53-204ENST00000507906 CDAN1Q8IWY9 1227 aa8.21□□□□□ -1.1
USP53-204ENST00000507906 MICALL2Q8IY33 904 aa8.21□□□□□ -1.1
USP53-204ENST00000507906 MARVELD3Q96A59 401 aa8.21□□□□□ -1.1
USP53-204ENST00000507906 GPBP1L1Q9HC44 474 aaPredicted RBP8.19□□□□□ -1.1
USP53-204ENST00000507906 C14orf37Q86TY3 774 aa8.18□□□□□ -1.1
USP53-204ENST00000507906 PDIA6Q15084 440 aa8.17□□□□□ -1.1
USP53-204ENST00000507906 GPR37O15354 613 aa8.16□□□□□ -1.1
USP53-204ENST00000507906 FOXK1P85037 733 aa8.16□□□□□ -1.1
USP53-204ENST00000507906 GPIHBP1Q8IV16 184 aa8.16□□□□□ -1.1
USP53-204ENST00000507906 AK7Q96M32 723 aa8.16□□□□□ -1.1
USP53-204ENST00000507906 TMEM121BQ9BXQ6 578 aaPredicted RBP8.16□□□□□ -1.1
USP53-204ENST00000507906 C2orf72A6NCS6 295 aa8.15□□□□□ -1.1
USP53-204ENST00000507906 KIF3CO14782 793 aa8.15□□□□□ -1.1
USP53-204ENST00000507906 PCDH10Q9P2E7 1040 aa8.15□□□□□ -1.1
USP53-204ENST00000507906 PLPP6Q8IY26 295 aa8.14□□□□□ -1.11
USP53-204ENST00000507906 L3MBTL3Q96JM7 780 aaPredicted RBP8.14□□□□□ -1.11
USP53-204ENST00000507906 TRIM66O15016 1216 aa8.13□□□□□ -1.11
USP53-204ENST00000507906 TMC2Q8TDI7 906 aa8.13□□□□□ -1.11
USP53-204ENST00000507906 SPDYE16A6NNV3 312 aaPredicted RBP8.12□□□□□ -1.11
USP53-204ENST00000507906 TMEM92Q6UXU6 159 aa8.12□□□□□ -1.11
USP53-204ENST00000507906 KRI1Q8N9T8 703 aaKnown RBP8.12□□□□□ -1.11
USP53-204ENST00000507906 IL27Q8NEV9 243 aa8.11□□□□□ -1.11
USP53-204ENST00000507906 BOLA1Q9Y3E2 137 aa8.11□□□□□ -1.11
USP53-204ENST00000507906 G3V3G9 751 aa8.1□□□□□ -1.11
USP53-204ENST00000507906 ERICH6Q7L0X2 663 aa8.1□□□□□ -1.11
USP53-204ENST00000507906 SNPHO15079 494 aa8.09□□□□□ -1.11
USP53-204ENST00000507906 PRIM1P49642 420 aaKnown RBP8.09□□□□□ -1.11
USP53-204ENST00000507906 KDM4CQ9H3R0 1056 aa8.09□□□□□ -1.11
USP53-204ENST00000507906 GRXCR2A6NFK2 248 aa8.08□□□□□ -1.12
USP53-204ENST00000507906 OSBPP22059 807 aa8.08□□□□□ -1.12
USP53-204ENST00000507906 EMP3P54852 163 aa8.08□□□□□ -1.12
USP53-204ENST00000507906 PDE4DQ08499 809 aa8.08□□□□□ -1.12
USP53-204ENST00000507906 FECHP22830 423 aa8.06□□□□□ -1.12
USP53-204ENST00000507906 UPF1Q92900 1129 aaKnown RBP eCLIP8.06□□□□□ -1.12
USP53-204ENST00000507906 FAM205CA6NFA0 338 aa8.05□□□□□ -1.12
USP53-204ENST00000507906 SUPT5HO00267 1087 aaKnown RBP8.05□□□□□ -1.12
USP53-204ENST00000507906 MAP3K9P80192 1104 aa8.05□□□□□ -1.12
USP53-204ENST00000507906 OXER1Q8TDS5 423 aa8.05□□□□□ -1.12
USP53-204ENST00000507906 POTEB3A0JP26 581 aa8.03□□□□□ -1.12
USP53-204ENST00000507906 NUTM2FA1L443 756 aa8.03□□□□□ -1.12
USP53-204ENST00000507906 POTEBQ6S5H4 581 aa8.03□□□□□ -1.12
USP53-204ENST00000507906 DDX12PQ92771 950 aa8.03□□□□□ -1.12
USP53-204ENST00000507906 FAM117AQ9C073 453 aa8.03□□□□□ -1.12
USP53-204ENST00000507906 PLEKHG3A1L390 1219 aa8.01□□□□□ -1.13
USP53-204ENST00000507906 IRF6O14896 467 aa8.01□□□□□ -1.13
USP53-204ENST00000507906 CCDC102AQ96A19 550 aa8.01□□□□□ -1.13
USP53-204ENST00000507906 HS3ST6Q96QI5 342 aa8.01□□□□□ -1.13
USP53-204ENST00000507906 HOXB3P14651 431 aaPredicted RBP8□□□□□ -1.13
USP53-204ENST00000507906 PTGER2P43116 358 aa8□□□□□ -1.13
USP53-204ENST00000507906 ARXQ96QS3 562 aa8□□□□□ -1.13
USP53-204ENST00000507906 MINK1Q8N4C8 1332 aaPredicted RBP8□□□□□ -1.13
USP53-204ENST00000507906 MAP2K5Q13163 448 aa7.98□□□□□ -1.13
USP53-204ENST00000507906 SPNS2Q8IVW8 549 aa7.98□□□□□ -1.13
USP53-204ENST00000507906 ZNF710Q8N1W2 664 aa7.98□□□□□ -1.13
USP53-204ENST00000507906 GNPATO15228 680 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms