RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 TROQ12816 1431 aaPredicted RBP18.96■□□□□ 0.63
HMGCS1-204ENST00000507293 POGZQ7Z3K3 1410 aa18.96■□□□□ 0.63
HMGCS1-204ENST00000507293 SCAPERQ9BY12 1400 aa18.95■□□□□ 0.62
HMGCS1-204ENST00000507293 YEATS2Q9ULM3 1422 aa18.95■□□□□ 0.62
HMGCS1-204ENST00000507293 CDK11AQ9UQ88 783 aaPredicted RBP18.95■□□□□ 0.62
HMGCS1-204ENST00000507293 MAGI2Q86UL8 1455 aa18.94■□□□□ 0.62
HMGCS1-204ENST00000507293 CLIP1P30622 1438 aa18.93■□□□□ 0.62
HMGCS1-204ENST00000507293 ARHGAP5Q13017 1502 aa18.92■□□□□ 0.62
HMGCS1-204ENST00000507293 CDC42BPBQ9Y5S2 1711 aa18.91■□□□□ 0.62
HMGCS1-204ENST00000507293 CASKIN1Q8WXD9 1431 aa18.91■□□□□ 0.62
HMGCS1-204ENST00000507293 CCDC18Q5T9S5 1454 aa18.9■□□□□ 0.62
HMGCS1-204ENST00000507293 EFCAB2Q5VUJ9 269 aa18.9■□□□□ 0.62
HMGCS1-204ENST00000507293 FER1L4A9Z1Z3 1794 aa18.89■□□□□ 0.61
HMGCS1-204ENST00000507293 PREX2Q70Z35 1606 aa18.89■□□□□ 0.61
HMGCS1-204ENST00000507293 ILDR1Q86SU0 546 aaPredicted RBP18.86■□□□□ 0.61
HMGCS1-204ENST00000507293 KDM5CP41229 1560 aa18.85■□□□□ 0.61
HMGCS1-204ENST00000507293 ZNF518AQ6AHZ1 1483 aa18.85■□□□□ 0.61
HMGCS1-204ENST00000507293 FYCO1Q9BQS8 1478 aa18.85■□□□□ 0.61
HMGCS1-204ENST00000507293 CDC42BPAQ5VT25 1732 aa18.85■□□□□ 0.61
HMGCS1-204ENST00000507293 C9orf84Q5VXU9 1444 aa18.84■□□□□ 0.61
HMGCS1-204ENST00000507293 ATP10AO60312 1499 aa18.84■□□□□ 0.61
HMGCS1-204ENST00000507293 LMTK3Q96Q04 1460 aa18.84■□□□□ 0.61
HMGCS1-204ENST00000507293 ITSN2Q9NZM3 1697 aa18.83■□□□□ 0.61
HMGCS1-204ENST00000507293 ABCC1P33527 1531 aa18.82■□□□□ 0.6
HMGCS1-204ENST00000507293 MLECQ14165 292 aa18.81■□□□□ 0.6
HMGCS1-204ENST00000507293 DIP2CQ9Y2E4 1556 aa18.8■□□□□ 0.6
HMGCS1-204ENST00000507293 ARHGEF12Q9NZN5 1544 aa18.79■□□□□ 0.6
HMGCS1-204ENST00000507293 ABCA6Q8N139 1617 aa18.79■□□□□ 0.6
HMGCS1-204ENST00000507293 PLPPR3Q6T4P5 718 aa18.79■□□□□ 0.6
HMGCS1-204ENST00000507293 AFAP1Q8N556 730 aa18.77■□□□□ 0.6
HMGCS1-204ENST00000507293 REREQ9P2R6 1566 aa18.76■□□□□ 0.59
HMGCS1-204ENST00000507293 TRAPPC8Q9Y2L5 1435 aa18.74■□□□□ 0.59
HMGCS1-204ENST00000507293 MLH3Q9UHC1 1453 aa18.74■□□□□ 0.59
HMGCS1-204ENST00000507293 MYT1LQ9UL68 1186 aa18.74■□□□□ 0.59
HMGCS1-204ENST00000507293 SAMD9LQ8IVG5 1584 aa18.73■□□□□ 0.59
HMGCS1-204ENST00000507293 KIDINS220Q9ULH0 1771 aa18.73■□□□□ 0.59
HMGCS1-204ENST00000507293 PREX1Q8TCU6 1659 aa18.72■□□□□ 0.59
HMGCS1-204ENST00000507293 SYCP2Q9BX26 1530 aa18.69■□□□□ 0.58
HMGCS1-204ENST00000507293 HSPA2P54652 639 aa18.69■□□□□ 0.58
HMGCS1-204ENST00000507293 GPATCH8Q9UKJ3 1502 aaKnown RBP18.69■□□□□ 0.58
HMGCS1-204ENST00000507293 AGLP35573 1532 aa18.68■□□□□ 0.58
HMGCS1-204ENST00000507293 ZNF777Q9ULD5 760 aaPredicted RBP18.66■□□□□ 0.58
HMGCS1-204ENST00000507293 C3P01024 1663 aa18.66■□□□□ 0.58
HMGCS1-204ENST00000507293 CEBPAP49715 358 aaPredicted RBP18.64■□□□□ 0.57
HMGCS1-204ENST00000507293 MTUS2Q5JR59 1369 aa18.64■□□□□ 0.57
HMGCS1-204ENST00000507293 CEP162Q5TB80 1403 aa18.63■□□□□ 0.57
HMGCS1-204ENST00000507293 EHBP1L1Q8N3D4 1523 aa18.63■□□□□ 0.57
HMGCS1-204ENST00000507293 CCNB3Q8WWL7 1395 aa18.62■□□□□ 0.57
HMGCS1-204ENST00000507293 TIAM1Q13009 1591 aa18.62■□□□□ 0.57
HMGCS1-204ENST00000507293 INO80Q9ULG1 1556 aaPredicted RBP18.62■□□□□ 0.57
HMGCS1-204ENST00000507293 SUPT6HQ7KZ85 1726 aaKnown RBP18.62■□□□□ 0.57
HMGCS1-204ENST00000507293 ATP7AQ04656 1500 aa18.61■□□□□ 0.57
HMGCS1-204ENST00000507293 PLEKHH2Q8IVE3 1493 aa18.61■□□□□ 0.57
HMGCS1-204ENST00000507293 SETD1BQ9UPS6 1966 aaKnown RBP18.6■□□□□ 0.57
HMGCS1-204ENST00000507293 KIAA1107Q9UPP5 1409 aa18.59■□□□□ 0.57
HMGCS1-204ENST00000507293 FBXO41Q8TF61 875 aa18.59■□□□□ 0.57
HMGCS1-204ENST00000507293 CFDP1Q9UEE9 299 aaPredicted RBP18.59■□□□□ 0.57
HMGCS1-204ENST00000507293 HNRNPMP52272 730 aaKnown RBP eCLIP18.58■□□□□ 0.566e-8■■■■■ 30.3
HMGCS1-204ENST00000507293 UHRF1BP1Q6BDS2 1440 aa18.57■□□□□ 0.56
HMGCS1-204ENST00000507293 SPAG9O60271 1321 aaKnown RBP18.57■□□□□ 0.56
HMGCS1-204ENST00000507293 STRCQ7RTU9 1775 aa18.57■□□□□ 0.56
HMGCS1-204ENST00000507293 MROH2AA6NES4 1674 aa18.57■□□□□ 0.56
HMGCS1-204ENST00000507293 PLXNC1O60486 1568 aa18.55■□□□□ 0.56
HMGCS1-204ENST00000507293 ESF1Q9H501 851 aaKnown RBP18.55■□□□□ 0.56
HMGCS1-204ENST00000507293 ADGBQ8N7X0 1667 aa18.54■□□□□ 0.56
HMGCS1-204ENST00000507293 CNTLNQ9NXG0 1405 aa18.54■□□□□ 0.56
HMGCS1-204ENST00000507293 CLTCQ00610 1675 aaKnown RBP18.53■□□□□ 0.56
HMGCS1-204ENST00000507293 A2MP01023 1474 aa18.52■□□□□ 0.56
HMGCS1-204ENST00000507293 ZNF644Q9H582 1327 aaPredicted RBP18.5■□□□□ 0.55
HMGCS1-204ENST00000507293 MBD5Q9P267 1494 aa18.49■□□□□ 0.55
HMGCS1-204ENST00000507293 NCOA2Q15596 1464 aa18.48■□□□□ 0.55
HMGCS1-204ENST00000507293 CAMSAP2Q08AD1 1489 aa18.46■□□□□ 0.54
HMGCS1-204ENST00000507293 NPATQ14207 1427 aa18.45■□□□□ 0.54
HMGCS1-204ENST00000507293 CERKQ8TCT0 537 aa18.44■□□□□ 0.54
HMGCS1-204ENST00000507293 MYO3AQ8NEV4 1616 aa18.44■□□□□ 0.54
HMGCS1-204ENST00000507293 ZMYM3Q14202 1370 aa18.43■□□□□ 0.54
HMGCS1-204ENST00000507293 RTEL1-TNFRSF6BF6WH68 1400 aa18.43■□□□□ 0.54
HMGCS1-204ENST00000507293 VPS8Q8N3P4 1428 aa18.43■□□□□ 0.54
HMGCS1-204ENST00000507293 CCDC141Q6ZP82 1450 aa18.43■□□□□ 0.54
HMGCS1-204ENST00000507293 ZNF142P52746 1687 aaPredicted RBP18.42■□□□□ 0.54
HMGCS1-204ENST00000507293 DMRT2Q9Y5R5 561 aa18.42■□□□□ 0.54
HMGCS1-204ENST00000507293 LOC105371045A0A1W2PR82 267 aa18.41■□□□□ 0.54
HMGCS1-204ENST00000507293 GGT6Q6P531 493 aa18.4■□□□□ 0.54
HMGCS1-204ENST00000507293 CAMSAP1Q5T5Y3 1602 aa18.4■□□□□ 0.54
HMGCS1-204ENST00000507293 PTPRTO14522 1441 aa18.4■□□□□ 0.54
HMGCS1-204ENST00000507293 NCOA1Q15788 1441 aa18.4■□□□□ 0.54
HMGCS1-204ENST00000507293 ARHGEF5Q12774 1597 aa18.39■□□□□ 0.53
HMGCS1-204ENST00000507293 LRRC9Q6ZRR7 1453 aa18.39■□□□□ 0.53
HMGCS1-204ENST00000507293 PTPRKQ15262 1439 aa18.38■□□□□ 0.53
HMGCS1-204ENST00000507293 DHX29Q7Z478 1369 aaKnown RBP18.37■□□□□ 0.53
HMGCS1-204ENST00000507293 CEP170BQ9Y4F5 1589 aaPredicted RBP18.37■□□□□ 0.53
HMGCS1-204ENST00000507293 MAP3K1Q13233 1512 aa18.34■□□□□ 0.53
HMGCS1-204ENST00000507293 PPP6R1Q9UPN7 881 aa18.34■□□□□ 0.53
HMGCS1-204ENST00000507293 RSPH4AQ5TD94 716 aa18.32■□□□□ 0.52
HMGCS1-204ENST00000507293 KDM5DQ9BY66 1539 aa18.32■□□□□ 0.52
HMGCS1-204ENST00000507293 FAM135AQ9P2D6 1515 aa18.32■□□□□ 0.52
HMGCS1-204ENST00000507293 LTBP4Q8N2S1 1624 aa18.31■□□□□ 0.52
HMGCS1-204ENST00000507293 MAST1Q9Y2H9 1570 aa18.31■□□□□ 0.52
HMGCS1-204ENST00000507293 KIF3BO15066 747 aa18.31■□□□□ 0.52
HMGCS1-204ENST00000507293 PLA2R1Q13018 1463 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms