RNA–Protein interactions for RNA: ENST00000504327.1

PDLIM1P4-201, Transcript of PDZ and LIM domain 1 pseudogene 4, humanhuman

BASIC

Gene PDLIM1P4, Length 1,006 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1P4-201ENST00000504327 KIF3CO14782 793 aa9.95□□□□□ -0.82
PDLIM1P4-201ENST00000504327 TMC2Q8TDI7 906 aa9.94□□□□□ -0.82
PDLIM1P4-201ENST00000504327 FAM163AQ96GL9 167 aaPredicted RBP9.94□□□□□ -0.82
PDLIM1P4-201ENST00000504327 LCE2DQ5TA82 110 aaPredicted RBP9.93□□□□□ -0.82
PDLIM1P4-201ENST00000504327 SNPHO15079 494 aa9.92□□□□□ -0.82
PDLIM1P4-201ENST00000504327 HOXB3P14651 431 aaPredicted RBP9.91□□□□□ -0.82
PDLIM1P4-201ENST00000504327 CADPS2Q86UW7 1296 aa9.91□□□□□ -0.82
PDLIM1P4-201ENST00000504327 ST18O60284 1047 aa9.89□□□□□ -0.83
PDLIM1P4-201ENST00000504327 NCKAP5LQ9HCH0 1330 aa9.88□□□□□ -0.83
PDLIM1P4-201ENST00000504327 CRISPLD2Q9H0B8 497 aa9.88□□□□□ -0.83
PDLIM1P4-201ENST00000504327 GPHNQ9NQX3 736 aaPredicted RBP9.88□□□□□ -0.83
PDLIM1P4-201ENST00000504327 DOK7Q18PE1 504 aa9.86□□□□□ -0.83
PDLIM1P4-201ENST00000504327 DSG2Q14126 1118 aa9.85□□□□□ -0.83
PDLIM1P4-201ENST00000504327 FOXK1P85037 733 aa9.84□□□□□ -0.83
PDLIM1P4-201ENST00000504327 PLPP6Q8IY26 295 aa9.83□□□□□ -0.84
PDLIM1P4-201ENST00000504327 ZNF710Q8N1W2 664 aa9.83□□□□□ -0.84
PDLIM1P4-201ENST00000504327 PDE4AP27815 886 aa9.82□□□□□ -0.84
PDLIM1P4-201ENST00000504327 LARP6Q9BRS8 491 aaKnown RBP9.82□□□□□ -0.84
PDLIM1P4-201ENST00000504327 PPP1R15BQ5SWA1 713 aa9.81□□□□□ -0.84
PDLIM1P4-201ENST00000504327 POTEMA6NI47 508 aa9.8□□□□□ -0.84
PDLIM1P4-201ENST00000504327 RIMBP2O15034 1052 aa9.8□□□□□ -0.84
PDLIM1P4-201ENST00000504327 PLCB2Q00722 1185 aa9.8□□□□□ -0.84
PDLIM1P4-201ENST00000504327 MARVELD3Q96A59 401 aa9.8□□□□□ -0.84
PDLIM1P4-201ENST00000504327 POTEGQ6S5H5 508 aa9.79□□□□□ -0.84
PDLIM1P4-201ENST00000504327 DDX27Q96GQ7 796 aaKnown RBP9.79□□□□□ -0.84
PDLIM1P4-201ENST00000504327 TSHZ2Q9NRE2 1034 aa9.79□□□□□ -0.84
PDLIM1P4-201ENST00000504327 MFSD10Q14728 455 aa9.78□□□□□ -0.84
PDLIM1P4-201ENST00000504327 KHSRPQ92945 711 aaKnown RBP eCLIP9.77□□□□□ -0.85
PDLIM1P4-201ENST00000504327 SLC34A2O95436 690 aa9.76□□□□□ -0.85
PDLIM1P4-201ENST00000504327 HOXB1P14653 301 aaPredicted RBP9.76□□□□□ -0.85
PDLIM1P4-201ENST00000504327 ARSIQ5FYB1 569 aa9.76□□□□□ -0.85
PDLIM1P4-201ENST00000504327 GPR153Q6NV75 609 aa9.76□□□□□ -0.85
PDLIM1P4-201ENST00000504327 ZSWIM6Q9HCJ5 1215 aa9.76□□□□□ -0.85
PDLIM1P4-201ENST00000504327 EMP3P54852 163 aa9.75□□□□□ -0.85
PDLIM1P4-201ENST00000504327 PCDHGA4Q9Y5G9 962 aa9.74□□□□□ -0.85
PDLIM1P4-201ENST00000504327 UPF1Q92900 1129 aaKnown RBP eCLIP9.73□□□□□ -0.85
PDLIM1P4-201ENST00000504327 NUDT7P0C024 238 aa9.71□□□□□ -0.86
PDLIM1P4-201ENST00000504327 PTCD2Q8WV60 388 aaKnown RBP9.71□□□□□ -0.86
PDLIM1P4-201ENST00000504327 FAM205CA6NFA0 338 aa9.69□□□□□ -0.86
PDLIM1P4-201ENST00000504327 OXER1Q8TDS5 423 aa9.69□□□□□ -0.86
PDLIM1P4-201ENST00000504327 EMILIN3Q9NT22 766 aa9.68□□□□□ -0.86
PDLIM1P4-201ENST00000504327 POTEB3A0JP26 581 aa9.67□□□□□ -0.86
PDLIM1P4-201ENST00000504327 HAP1P54257 671 aaPredicted RBP9.67□□□□□ -0.86
PDLIM1P4-201ENST00000504327 POTEBQ6S5H4 581 aa9.67□□□□□ -0.86
PDLIM1P4-201ENST00000504327 HS3ST6Q96QI5 342 aa9.67□□□□□ -0.86
PDLIM1P4-201ENST00000504327 ERBB3P21860 1342 aa9.66□□□□□ -0.86
PDLIM1P4-201ENST00000504327 CAMK2BQ13554 666 aa9.66□□□□□ -0.86
PDLIM1P4-201ENST00000504327 TBC1D12O60347 775 aa9.64□□□□□ -0.87
PDLIM1P4-201ENST00000504327 VARS2Q5ST30 1063 aaKnown RBP9.64□□□□□ -0.87
PDLIM1P4-201ENST00000504327 WDR70Q9NW82 654 aa9.64□□□□□ -0.87
PDLIM1P4-201ENST00000504327 KDM4FA0A1W2PPD8 638 aa9.63□□□□□ -0.87
PDLIM1P4-201ENST00000504327 ZNF316A6NFI3 1004 aaPredicted RBP9.63□□□□□ -0.87
PDLIM1P4-201ENST00000504327 LHX6Q9UPM6 363 aa9.63□□□□□ -0.87
PDLIM1P4-201ENST00000504327 CDAN1Q8IWY9 1227 aa9.61□□□□□ -0.87
PDLIM1P4-201ENST00000504327 DPYSL4O14531 572 aa9.6□□□□□ -0.87
PDLIM1P4-201ENST00000504327 MAP3K9P80192 1104 aa9.6□□□□□ -0.87
PDLIM1P4-201ENST00000504327 E2F4Q16254 413 aa9.6□□□□□ -0.87
PDLIM1P4-201ENST00000504327 EVI5O60447 810 aa9.58□□□□□ -0.88
PDLIM1P4-201ENST00000504327 ZNF687Q8N1G0 1237 aa9.53□□□□□ -0.88
PDLIM1P4-201ENST00000504327 KCNV2Q8TDN2 545 aa9.53□□□□□ -0.88
PDLIM1P4-201ENST00000504327 KRTAP3-3Q9BYR6 98 aa9.53□□□□□ -0.88
PDLIM1P4-201ENST00000504327 KRTAP3-2Q9BYR7 98 aa9.53□□□□□ -0.88
PDLIM1P4-201ENST00000504327 PCDH10Q9P2E7 1040 aa9.53□□□□□ -0.88
PDLIM1P4-201ENST00000504327 KDM2AQ9Y2K7 1162 aa9.53□□□□□ -0.88
PDLIM1P4-201ENST00000504327 ANO8Q9HCE9 1232 aaPredicted RBP9.52□□□□□ -0.89
PDLIM1P4-201ENST00000504327 PSDA5PKW4 1024 aaPredicted RBP9.51□□□□□ -0.89
PDLIM1P4-201ENST00000504327 ZNF454Q8N9F8 522 aa9.51□□□□□ -0.89
PDLIM1P4-201ENST00000504327 PDIA6Q15084 440 aa9.5□□□□□ -0.89
PDLIM1P4-201ENST00000504327 PPP4R3BQ5MIZ7 849 aa9.5□□□□□ -0.89
PDLIM1P4-201ENST00000504327 ARIH1Q9Y4X5 557 aaPredicted RBP9.5□□□□□ -0.89
PDLIM1P4-201ENST00000504327 FOSBP53539 338 aa9.49□□□□□ -0.89
PDLIM1P4-201ENST00000504327 POTEEQ6S8J3 1075 aa9.49□□□□□ -0.89
PDLIM1P4-201ENST00000504327 JPH4Q96JJ6 628 aa9.49□□□□□ -0.89
PDLIM1P4-201ENST00000504327 AXIN2Q9Y2T1 843 aa9.47□□□□□ -0.89
PDLIM1P4-201ENST00000504327 DDX12PQ92771 950 aa9.46□□□□□ -0.9
PDLIM1P4-201ENST00000504327 SPDYE16A6NNV3 312 aaPredicted RBP9.45□□□□□ -0.9
PDLIM1P4-201ENST00000504327 P3H3Q8IVL6 736 aa9.45□□□□□ -0.9
PDLIM1P4-201ENST00000504327 ARHGEF1Q92888 912 aaKnown RBP9.45□□□□□ -0.9
PDLIM1P4-201ENST00000504327 PCDHGA10Q9Y5H3 936 aa9.45□□□□□ -0.9
PDLIM1P4-201ENST00000504327 VSIG10Q8N0Z9 540 aa9.44□□□□□ -0.9
PDLIM1P4-201ENST00000504327 PHF14O94880 888 aa9.43□□□□□ -0.9
PDLIM1P4-201ENST00000504327 PBX2P40425 430 aa9.43□□□□□ -0.9
PDLIM1P4-201ENST00000504327 PSEN2P49810 448 aa9.43□□□□□ -0.9
PDLIM1P4-201ENST00000504327 ZDHHC16Q969W1 377 aa9.43□□□□□ -0.9
PDLIM1P4-201ENST00000504327 ADAM33Q9BZ11 813 aa9.43□□□□□ -0.9
PDLIM1P4-201ENST00000504327 PTGER2P43116 358 aa9.42□□□□□ -0.9
PDLIM1P4-201ENST00000504327 KCNK17Q96T54 332 aa9.42□□□□□ -0.9
PDLIM1P4-201ENST00000504327 ARHGAP33O14559 1287 aa9.41□□□□□ -0.9
PDLIM1P4-201ENST00000504327 BCL2L12Q9HB09 334 aa9.41□□□□□ -0.9
PDLIM1P4-201ENST00000504327 LSM11P83369 360 aaKnown RBP eCLIP9.4□□□□□ -0.9
PDLIM1P4-201ENST00000504327 NBR1Q14596 966 aa9.4□□□□□ -0.9
PDLIM1P4-201ENST00000504327 TYW1BQ6NUM6 668 aa9.4□□□□□ -0.9
PDLIM1P4-201ENST00000504327 GRXCR2A6NFK2 248 aa9.39□□□□□ -0.91
PDLIM1P4-201ENST00000504327 DMRTA1Q5VZB9 504 aa9.39□□□□□ -0.91
PDLIM1P4-201ENST00000504327 ANKRD13DQ6ZTN6 518 aa9.38□□□□□ -0.91
PDLIM1P4-201ENST00000504327 FBXW7Q969H0 707 aa9.38□□□□□ -0.91
PDLIM1P4-201ENST00000504327 RBM33Q96EV2 1170 aaKnown RBP9.38□□□□□ -0.91
PDLIM1P4-201ENST00000504327 EPAS1Q99814 870 aa9.38□□□□□ -0.91
PDLIM1P4-201ENST00000504327 PTPREP23469 700 aa9.37□□□□□ -0.91
PDLIM1P4-201ENST00000504327 SPNS2Q8IVW8 549 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms