RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 TRAIPQ9BWF2 469 aa10.1□□□□□ -0.79
BRCA1-224ENST00000497488 TRAK2O60296 914 aa10.09□□□□□ -0.79
BRCA1-224ENST00000497488 ONECUT3O60422 494 aaPredicted RBP10.08□□□□□ -0.8
BRCA1-224ENST00000497488 PDAP1Q13442 181 aaKnown RBP10.08□□□□□ -0.8
BRCA1-224ENST00000497488 ZNF467Q7Z7K2 595 aaPredicted RBP10.08□□□□□ -0.8
BRCA1-224ENST00000497488 SP7Q8TDD2 431 aaPredicted RBP10.08□□□□□ -0.8
BRCA1-224ENST00000497488 ZRANB1Q9UGI0 708 aa10.08□□□□□ -0.8
BRCA1-224ENST00000497488 LOC105371045A0A1W2PR82 267 aa10.07□□□□□ -0.8
BRCA1-224ENST00000497488 PLEKHG3A1L390 1219 aa10.07□□□□□ -0.8
BRCA1-224ENST00000497488 TSPYL2Q9H2G4 693 aaPredicted RBP10.07□□□□□ -0.8
BRCA1-224ENST00000497488 NCKAP5LQ9HCH0 1330 aa10.06□□□□□ -0.8
BRCA1-224ENST00000497488 RAD21O60216 631 aa10.05□□□□□ -0.8
BRCA1-224ENST00000497488 DDRGK1Q96HY6 314 aa10.05□□□□□ -0.8
BRCA1-224ENST00000497488 MFSD10Q14728 455 aa10.04□□□□□ -0.8
BRCA1-224ENST00000497488 ZNF579Q8NAF0 562 aaKnown RBP10.04□□□□□ -0.8
BRCA1-224ENST00000497488 CLUAP1Q96AJ1 413 aa10.03□□□□□ -0.8
BRCA1-224ENST00000497488 LARP6Q9BRS8 491 aaKnown RBP10.03□□□□□ -0.8
BRCA1-224ENST00000497488 PAK3O75914 559 aaPredicted RBP10.02□□□□□ -0.81
BRCA1-224ENST00000497488 MLLT3P42568 568 aaPredicted RBP10.02□□□□□ -0.81
BRCA1-224ENST00000497488 RGS22Q8NE09 1264 aa10.02□□□□□ -0.81
BRCA1-224ENST00000497488 PHF12Q96QT6 1004 aa10.02□□□□□ -0.81
BRCA1-224ENST00000497488 CCDC61Q9Y6R9 512 aa10.02□□□□□ -0.81
BRCA1-224ENST00000497488 FBXO22Q8NEZ5 403 aa10.01□□□□□ -0.81
BRCA1-224ENST00000497488 PDE4AP27815 886 aa9.99□□□□□ -0.81
BRCA1-224ENST00000497488 CAMK2BQ13554 666 aa9.99□□□□□ -0.81
BRCA1-224ENST00000497488 GABBR2O75899 941 aa9.98□□□□□ -0.81
BRCA1-224ENST00000497488 NLRP6P59044 892 aa9.97□□□□□ -0.81
BRCA1-224ENST00000497488 AEBP1Q8IUX7 1158 aa9.97□□□□□ -0.81
BRCA1-224ENST00000497488 GOPCQ9HD26 462 aa9.97□□□□□ -0.81
BRCA1-224ENST00000497488 IGSF3O75054 1194 aa9.95□□□□□ -0.82
BRCA1-224ENST00000497488 PSEN1P49768 467 aa9.95□□□□□ -0.82
BRCA1-224ENST00000497488 TMCO4Q5TGY1 634 aa9.95□□□□□ -0.82
BRCA1-224ENST00000497488 DDX27Q96GQ7 796 aaKnown RBP9.95□□□□□ -0.82
BRCA1-224ENST00000497488 CRISPLD2Q9H0B8 497 aa9.95□□□□□ -0.82
BRCA1-224ENST00000497488 MTMR7Q9Y216 660 aa9.95□□□□□ -0.82
BRCA1-224ENST00000497488 PCDHB8Q9UN66 801 aa9.94□□□□□ -0.82
BRCA1-224ENST00000497488 PCDHB13Q9Y5F0 798 aa9.94□□□□□ -0.82
BRCA1-224ENST00000497488 GPR37O15354 613 aa9.93□□□□□ -0.82
BRCA1-224ENST00000497488 KIF12Q96FN5 646 aa9.93□□□□□ -0.82
BRCA1-224ENST00000497488 SERPINA10Q9UK55 444 aa9.93□□□□□ -0.82
BRCA1-224ENST00000497488 SHROOM4Q9ULL8 1493 aa9.92□□□□□ -0.82
BRCA1-224ENST00000497488 GALR2O43603 387 aaPredicted RBP9.92□□□□□ -0.82
BRCA1-224ENST00000497488 AMHR2Q16671 573 aa9.92□□□□□ -0.82
BRCA1-224ENST00000497488 PARP9Q8IXQ6 854 aa9.92□□□□□ -0.82
BRCA1-224ENST00000497488 MINK1Q8N4C8 1332 aaPredicted RBP9.91□□□□□ -0.82
BRCA1-224ENST00000497488 SOX12O15370 315 aa9.91□□□□□ -0.82
BRCA1-224ENST00000497488 MCM6Q14566 821 aa9.91□□□□□ -0.82
BRCA1-224ENST00000497488 CCDC97Q96F63 343 aaPredicted RBP9.91□□□□□ -0.82
BRCA1-224ENST00000497488 ZNF777Q9ULD5 760 aaPredicted RBP9.91□□□□□ -0.82
BRCA1-224ENST00000497488 PHF8Q9UPP1 1060 aa9.91□□□□□ -0.82
BRCA1-224ENST00000497488 MFAP1P55081 439 aaKnown RBP9.9□□□□□ -0.82
BRCA1-224ENST00000497488 PROSER2Q86WR7 435 aaPredicted RBP9.9□□□□□ -0.82
BRCA1-224ENST00000497488 EFCAB3Q8N7B9 438 aa9.9□□□□□ -0.82
BRCA1-224ENST00000497488 MAP3K13O43283 966 aa9.89□□□□□ -0.83
BRCA1-224ENST00000497488 MS4A3Q96HJ5 214 aa9.89□□□□□ -0.83
BRCA1-224ENST00000497488 CCDC102AQ96A19 550 aa9.88□□□□□ -0.83
BRCA1-224ENST00000497488 CLCN6P51797 869 aa9.87□□□□□ -0.83
BRCA1-224ENST00000497488 PCMTD1Q96MG8 357 aaPredicted RBP9.87□□□□□ -0.83
BRCA1-224ENST00000497488 GZF1Q9H116 711 aaPredicted RBP9.87□□□□□ -0.83
BRCA1-224ENST00000497488 RBM25P49756 843 aaKnown RBP9.86□□□□□ -0.83
BRCA1-224ENST00000497488 MAP2K5Q13163 448 aa9.86□□□□□ -0.83
BRCA1-224ENST00000497488 FOXD4L5Q5VV16 416 aaPredicted RBP9.86□□□□□ -0.83
BRCA1-224ENST00000497488 FNBP4Q8N3X1 1017 aaPredicted RBP9.86□□□□□ -0.83
BRCA1-224ENST00000497488 RETREG2Q8NC44 543 aa9.86□□□□□ -0.83
BRCA1-224ENST00000497488 FOXD4L4Q8WXT5 416 aaPredicted RBP9.86□□□□□ -0.83
BRCA1-224ENST00000497488 IRF6O14896 467 aa9.84□□□□□ -0.83
BRCA1-224ENST00000497488 POTEIP0CG38 1075 aa9.83□□□□□ -0.84
BRCA1-224ENST00000497488 ZNF428Q96B54 188 aa9.83□□□□□ -0.84
BRCA1-224ENST00000497488 TRPC6Q9Y210 931 aa9.83□□□□□ -0.84
BRCA1-224ENST00000497488 IRF5Q13568 498 aa9.82□□□□□ -0.84
BRCA1-224ENST00000497488 CABP2Q9NPB3 220 aa9.82□□□□□ -0.84
BRCA1-224ENST00000497488 IFNL1Q8IU54 200 aa9.81□□□□□ -0.84
BRCA1-224ENST00000497488 SPDYE16A6NNV3 312 aaPredicted RBP9.8□□□□□ -0.84
BRCA1-224ENST00000497488 POM121Q96HA1 1249 aa9.8□□□□□ -0.84
BRCA1-224ENST00000497488 PDIA6Q15084 440 aa9.79□□□□□ -0.84
BRCA1-224ENST00000497488 PLSCR2Q9NRY7 297 aa9.78□□□□□ -0.84
BRCA1-224ENST00000497488 DPYSL4O14531 572 aa9.77□□□□□ -0.85
BRCA1-224ENST00000497488 TTLL12Q14166 644 aaPredicted RBP9.77□□□□□ -0.85
BRCA1-224ENST00000497488 MS4A4AQ96JQ5 239 aa9.77□□□□□ -0.85
BRCA1-224ENST00000497488 SH3D19Q5HYK7 790 aa9.76□□□□□ -0.85
BRCA1-224ENST00000497488 PELP1Q8IZL8 1130 aaKnown RBP9.76□□□□□ -0.85
BRCA1-224ENST00000497488 FBXW7Q969H0 707 aa9.76□□□□□ -0.85
BRCA1-224ENST00000497488 E9PSI1 815 aa9.75□□□□□ -0.85
BRCA1-224ENST00000497488 PPP1R15BQ5SWA1 713 aa9.75□□□□□ -0.85
BRCA1-224ENST00000497488 MS4A1P11836 297 aa9.74□□□□□ -0.85
BRCA1-224ENST00000497488 DCBLD2Q96PD2 775 aa9.74□□□□□ -0.85
BRCA1-224ENST00000497488 GNPATO15228 680 aa9.73□□□□□ -0.85
BRCA1-224ENST00000497488 GIGYF2Q6Y7W6 1299 aaKnown RBP9.73□□□□□ -0.85
BRCA1-224ENST00000497488 BMP2KQ9NSY1 1161 aaPredicted RBP9.73□□□□□ -0.85
BRCA1-224ENST00000497488 EMILIN3Q9NT22 766 aa9.73□□□□□ -0.85
BRCA1-224ENST00000497488 NUTM2FA1L443 756 aa9.72□□□□□ -0.85
BRCA1-224ENST00000497488 ASTLQ6HA08 431 aaPredicted RBP9.72□□□□□ -0.85
BRCA1-224ENST00000497488 ATMINO43313 823 aaPredicted RBP9.71□□□□□ -0.86
BRCA1-224ENST00000497488 PPP1R15AO75807 674 aaPredicted RBP9.71□□□□□ -0.86
BRCA1-224ENST00000497488 HMGB1P09429 215 aaKnown RBP9.71□□□□□ -0.86
BRCA1-224ENST00000497488 PATL2C9JE40 543 aaKnown RBP9.7□□□□□ -0.86
BRCA1-224ENST00000497488 TIE1P35590 1138 aa9.7□□□□□ -0.86
BRCA1-224ENST00000497488 OXER1Q8TDS5 423 aa9.7□□□□□ -0.86
BRCA1-224ENST00000497488 TTLL13PA6NNM8 815 aa9.69□□□□□ -0.86
BRCA1-224ENST00000497488 ATN1P54259 1190 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms