RNA–Protein interactions for RNA: ENST00000496855.1

SNX13-211, Transcript of sorting nexin 13, humanhuman

TSL 1 (best)

Gene SNX13, Length 1,499 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-211ENST00000496855 SLAIN1Q8ND83 568 aa12.78□□□□□ -0.36
SNX13-211ENST00000496855 TSHZ2Q9NRE2 1034 aa12.78□□□□□ -0.36
SNX13-211ENST00000496855 TMC2Q8TDI7 906 aa12.74□□□□□ -0.37
SNX13-211ENST00000496855 KIF3CO14782 793 aa12.73□□□□□ -0.37
SNX13-211ENST00000496855 HAP1P54257 671 aaPredicted RBP12.73□□□□□ -0.37
SNX13-211ENST00000496855 CRISPLD2Q9H0B8 497 aa12.73□□□□□ -0.37
SNX13-211ENST00000496855 NCKAP5LQ9HCH0 1330 aa12.73□□□□□ -0.37
SNX13-211ENST00000496855 C2orf72A6NCS6 295 aa12.72□□□□□ -0.37
SNX13-211ENST00000496855 GPHNQ9NQX3 736 aaPredicted RBP12.72□□□□□ -0.37
SNX13-211ENST00000496855 PDE4AP27815 886 aa12.72□□□□□ -0.37
SNX13-211ENST00000496855 LARP6Q9BRS8 491 aaKnown RBP12.67□□□□□ -0.38
SNX13-211ENST00000496855 FOXK1P85037 733 aa12.65□□□□□ -0.38
SNX13-211ENST00000496855 DSG2Q14126 1118 aa12.64□□□□□ -0.39
SNX13-211ENST00000496855 MFSD10Q14728 455 aa12.64□□□□□ -0.39
SNX13-211ENST00000496855 DDX27Q96GQ7 796 aaKnown RBP12.63□□□□□ -0.39
SNX13-211ENST00000496855 PPP1R15BQ5SWA1 713 aa12.61□□□□□ -0.39
SNX13-211ENST00000496855 PLPP6Q8IY26 295 aa12.6□□□□□ -0.39
SNX13-211ENST00000496855 SNPHO15079 494 aa12.59□□□□□ -0.39
SNX13-211ENST00000496855 WDR70Q9NW82 654 aa12.57□□□□□ -0.4
SNX13-211ENST00000496855 HOXB3P14651 431 aaPredicted RBP12.56□□□□□ -0.4
SNX13-211ENST00000496855 VSIG10Q8N0Z9 540 aa12.55□□□□□ -0.4
SNX13-211ENST00000496855 DOK7Q18PE1 504 aa12.54□□□□□ -0.4
SNX13-211ENST00000496855 KDM2AQ9Y2K7 1162 aa12.53□□□□□ -0.4
SNX13-211ENST00000496855 SLC34A2O95436 690 aa12.51□□□□□ -0.41
SNX13-211ENST00000496855 CAMK2BQ13554 666 aa12.49□□□□□ -0.41
SNX13-211ENST00000496855 RIMBP2O15034 1052 aa12.48□□□□□ -0.41
SNX13-211ENST00000496855 SLC24A1O60721 1099 aa12.48□□□□□ -0.41
SNX13-211ENST00000496855 ZNF710Q8N1W2 664 aa12.48□□□□□ -0.41
SNX13-211ENST00000496855 E2F4Q16254 413 aa12.47□□□□□ -0.41
SNX13-211ENST00000496855 PTCD2Q8WV60 388 aaKnown RBP12.46□□□□□ -0.42
SNX13-211ENST00000496855 FAM163AQ96GL9 167 aaPredicted RBP12.46□□□□□ -0.42
SNX13-211ENST00000496855 ZSWIM6Q9HCJ5 1215 aa12.46□□□□□ -0.42
SNX13-211ENST00000496855 EMILIN3Q9NT22 766 aa12.45□□□□□ -0.42
SNX13-211ENST00000496855 OXER1Q8TDS5 423 aa12.44□□□□□ -0.42
SNX13-211ENST00000496855 ST18O60284 1047 aa12.43□□□□□ -0.42
SNX13-211ENST00000496855 UPF1Q92900 1129 aaKnown RBP eCLIP12.43□□□□□ -0.42
SNX13-211ENST00000496855 PCDHGA4Q9Y5G9 962 aa12.42□□□□□ -0.42
SNX13-211ENST00000496855 GPR153Q6NV75 609 aa12.41□□□□□ -0.42
SNX13-211ENST00000496855 TBC1D12O60347 775 aa12.4□□□□□ -0.43
SNX13-211ENST00000496855 ARSIQ5FYB1 569 aa12.4□□□□□ -0.43
SNX13-211ENST00000496855 HOXB1P14653 301 aaPredicted RBP12.39□□□□□ -0.43
SNX13-211ENST00000496855 LCE2DQ5TA82 110 aaPredicted RBP12.39□□□□□ -0.43
SNX13-211ENST00000496855 KCNV2Q8TDN2 545 aa12.38□□□□□ -0.43
SNX13-211ENST00000496855 P3H3Q8IVL6 736 aa12.37□□□□□ -0.43
SNX13-211ENST00000496855 MAP3K9P80192 1104 aa12.36□□□□□ -0.43
SNX13-211ENST00000496855 KHSRPQ92945 711 aaKnown RBP eCLIP12.36□□□□□ -0.431e-6■■■■□ 19.7
SNX13-211ENST00000496855 ARIH1Q9Y4X5 557 aaPredicted RBP12.36□□□□□ -0.43
SNX13-211ENST00000496855 DPYSL4O14531 572 aa12.35□□□□□ -0.43
SNX13-211ENST00000496855 NUDT7P0C024 238 aa12.33□□□□□ -0.44
SNX13-211ENST00000496855 ARHGEF1Q92888 912 aaKnown RBP12.33□□□□□ -0.44
SNX13-211ENST00000496855 KDM4FA0A1W2PPD8 638 aa12.32□□□□□ -0.44
SNX13-211ENST00000496855 MARVELD3Q96A59 401 aa12.31□□□□□ -0.44
SNX13-211ENST00000496855 EVI5O60447 810 aa12.3□□□□□ -0.44
SNX13-211ENST00000496855 EMP3P54852 163 aa12.28□□□□□ -0.44
SNX13-211ENST00000496855 PDIA6Q15084 440 aa12.27□□□□□ -0.44
SNX13-211ENST00000496855 ZNF316A6NFI3 1004 aaPredicted RBP12.27□□□□□ -0.45
SNX13-211ENST00000496855 ANO8Q9HCE9 1232 aaPredicted RBP12.27□□□□□ -0.45
SNX13-211ENST00000496855 SPDYE16A6NNV3 312 aaPredicted RBP12.26□□□□□ -0.45
SNX13-211ENST00000496855 LHX6Q9UPM6 363 aa12.24□□□□□ -0.45
SNX13-211ENST00000496855 ERBB3P21860 1342 aa12.22□□□□□ -0.45
SNX13-211ENST00000496855 FAM205CA6NFA0 338 aa12.21□□□□□ -0.45
SNX13-211ENST00000496855 POTEGQ6S5H5 508 aa12.19□□□□□ -0.46
SNX13-211ENST00000496855 POTEMA6NI47 508 aa12.18□□□□□ -0.46
SNX13-211ENST00000496855 PTGER2P43116 358 aa12.18□□□□□ -0.46
SNX13-211ENST00000496855 VARS2Q5ST30 1063 aaKnown RBP12.18□□□□□ -0.46
SNX13-211ENST00000496855 PSDA5PKW4 1024 aaPredicted RBP12.17□□□□□ -0.46
SNX13-211ENST00000496855 HS3ST6Q96QI5 342 aa12.17□□□□□ -0.46
SNX13-211ENST00000496855 POTEB3A0JP26 581 aa12.15□□□□□ -0.46
SNX13-211ENST00000496855 FOSBP53539 338 aa12.15□□□□□ -0.46
SNX13-211ENST00000496855 POTEBQ6S5H4 581 aa12.15□□□□□ -0.46
SNX13-211ENST00000496855 JPH4Q96JJ6 628 aa12.15□□□□□ -0.46
SNX13-211ENST00000496855 ZNF454Q8N9F8 522 aa12.14□□□□□ -0.47
SNX13-211ENST00000496855 DDX12PQ92771 950 aa12.14□□□□□ -0.47
SNX13-211ENST00000496855 SEMA3EO15041 775 aa12.14□□□□□ -0.47
SNX13-211ENST00000496855 PHF14O94880 888 aa12.13□□□□□ -0.47
SNX13-211ENST00000496855 PPP4R3BQ5MIZ7 849 aa12.13□□□□□ -0.47
SNX13-211ENST00000496855 PCDHGA10Q9Y5H3 936 aa12.12□□□□□ -0.47
SNX13-211ENST00000496855 GRXCR2A6NFK2 248 aa12.1□□□□□ -0.47
SNX13-211ENST00000496855 MLLT3P42568 568 aaPredicted RBP12.09□□□□□ -0.47
SNX13-211ENST00000496855 EPAS1Q99814 870 aa12.09□□□□□ -0.47
SNX13-211ENST00000496855 TESPA1A2RU30 521 aaPredicted RBP12.08□□□□□ -0.47
SNX13-211ENST00000496855 ZNF687Q8N1G0 1237 aa12.08□□□□□ -0.47
SNX13-211ENST00000496855 ZDHHC16Q969W1 377 aa12.08□□□□□ -0.47
SNX13-211ENST00000496855 NBR1Q14596 966 aa12.08□□□□□ -0.48
SNX13-211ENST00000496855 TYW1BQ6NUM6 668 aa12.08□□□□□ -0.48
SNX13-211ENST00000496855 FBXW7Q969H0 707 aa12.07□□□□□ -0.48
SNX13-211ENST00000496855 OSBPP22059 807 aa12.04□□□□□ -0.48
SNX13-211ENST00000496855 ADAM33Q9BZ11 813 aa12.04□□□□□ -0.48
SNX13-211ENST00000496855 BCL2L12Q9HB09 334 aa12.03□□□□□ -0.48
SNX13-211ENST00000496855 CDAN1Q8IWY9 1227 aa12.02□□□□□ -0.48
SNX13-211ENST00000496855 EN1Q05925 392 aaPredicted RBP12.02□□□□□ -0.49
SNX13-211ENST00000496855 PBX2P40425 430 aa12.01□□□□□ -0.49
SNX13-211ENST00000496855 PRIM1P49642 420 aaKnown RBP12.01□□□□□ -0.49
SNX13-211ENST00000496855 SMYD5Q6GMV2 418 aa12.01□□□□□ -0.49
SNX13-211ENST00000496855 POTEEQ6S8J3 1075 aa12.01□□□□□ -0.49
SNX13-211ENST00000496855 RBM33Q96EV2 1170 aaKnown RBP12.01□□□□□ -0.49
SNX13-211ENST00000496855 ARHGAP33O14559 1287 aa11.99□□□□□ -0.49
SNX13-211ENST00000496855 MAP3K7O43318 606 aa11.99□□□□□ -0.49
SNX13-211ENST00000496855 PTPREP23469 700 aa11.98□□□□□ -0.49
SNX13-211ENST00000496855 AXIN2Q9Y2T1 843 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms