RNA–Protein interactions for RNA: ENST00000496723.1

CD46-218, Transcript of CD46 molecule, humanhuman

TSL 5

Gene CD46, Length 661 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-218ENST00000496723 ZSWIM6Q9HCJ5 1215 aa11.49□□□□□ -0.57
CD46-218ENST00000496723 SPNS2Q8IVW8 549 aa11.48□□□□□ -0.57
CD46-218ENST00000496723 POTEB3A0JP26 581 aa11.47□□□□□ -0.57
CD46-218ENST00000496723 POTEBQ6S5H4 581 aa11.47□□□□□ -0.57
CD46-218ENST00000496723 MFRPQ9BY79 579 aa11.46□□□□□ -0.57
CD46-218ENST00000496723 RGL2O15211 777 aa11.44□□□□□ -0.58
CD46-218ENST00000496723 MMRN1Q13201 1228 aa11.44□□□□□ -0.58
CD46-218ENST00000496723 ERBB3P21860 1342 aa11.42□□□□□ -0.58
CD46-218ENST00000496723 KRTAP3-3Q9BYR6 98 aa11.42□□□□□ -0.58
CD46-218ENST00000496723 KRTAP3-2Q9BYR7 98 aa11.42□□□□□ -0.58
CD46-218ENST00000496723 GPR153Q6NV75 609 aa11.38□□□□□ -0.59
CD46-218ENST00000496723 KIF3CO14782 793 aa11.33□□□□□ -0.6
CD46-218ENST00000496723 VARS2Q5ST30 1063 aaKnown RBP11.33□□□□□ -0.6
CD46-218ENST00000496723 C2orf72A6NCS6 295 aa11.3□□□□□ -0.6
CD46-218ENST00000496723 ARSIQ5FYB1 569 aa11.3□□□□□ -0.6
CD46-218ENST00000496723 ZNF687Q8N1G0 1237 aa11.29□□□□□ -0.6
CD46-218ENST00000496723 HS6ST3Q8IZP7 471 aa11.27□□□□□ -0.61
CD46-218ENST00000496723 TMC2Q8TDI7 906 aa11.27□□□□□ -0.61
CD46-218ENST00000496723 SLC34A2O95436 690 aa11.25□□□□□ -0.61
CD46-218ENST00000496723 ZNF316A6NFI3 1004 aaPredicted RBP11.23□□□□□ -0.61
CD46-218ENST00000496723 PPP1R37O75864 691 aa11.22□□□□□ -0.61
CD46-218ENST00000496723 KHSRPQ92945 711 aaKnown RBP eCLIP11.2□□□□□ -0.625e-18■■□□□ 13.7
CD46-218ENST00000496723 DNAJC5Q9H3Z4 198 aa11.17□□□□□ -0.62
CD46-218ENST00000496723 PCDHGA4Q9Y5G9 962 aa11.17□□□□□ -0.62
CD46-218ENST00000496723 CHGAP10645 457 aaKnown RBP11.16□□□□□ -0.62
CD46-218ENST00000496723 PTGER2P43116 358 aa11.16□□□□□ -0.62
CD46-218ENST00000496723 NUDT7P0C024 238 aa11.15□□□□□ -0.62
CD46-218ENST00000496723 RYDENQ9NUL5 291 aaKnown RBP11.15□□□□□ -0.62
CD46-218ENST00000496723 PBX2P40425 430 aa11.13□□□□□ -0.63
CD46-218ENST00000496723 FOXK1P85037 733 aa11.13□□□□□ -0.63
CD46-218ENST00000496723 GPHNQ9NQX3 736 aaPredicted RBP11.13□□□□□ -0.63
CD46-218ENST00000496723 MYT1LQ9UL68 1186 aa11.13□□□□□ -0.63
CD46-218ENST00000496723 RNF166Q96A37 237 aaPredicted RBP11.12□□□□□ -0.63
CD46-218ENST00000496723 PTCD2Q8WV60 388 aaKnown RBP11.11□□□□□ -0.63
CD46-218ENST00000496723 LHX6Q9UPM6 363 aa11.11□□□□□ -0.63
CD46-218ENST00000496723 PSDA5PKW4 1024 aaPredicted RBP11.1□□□□□ -0.63
CD46-218ENST00000496723 LSM11P83369 360 aaKnown RBP eCLIP11.09□□□□□ -0.63
CD46-218ENST00000496723 ANKRD13DQ6ZTN6 518 aa11.09□□□□□ -0.63
CD46-218ENST00000496723 PLPP6Q8IY26 295 aa11.07□□□□□ -0.64
CD46-218ENST00000496723 KDM4FA0A1W2PPD8 638 aa11.06□□□□□ -0.64
CD46-218ENST00000496723 NKX1-1Q15270 411 aaPredicted RBP11.06□□□□□ -0.64
CD46-218ENST00000496723 TBC1D12O60347 775 aa11.05□□□□□ -0.64
CD46-218ENST00000496723 DSG2Q14126 1118 aa11.04□□□□□ -0.64
CD46-218ENST00000496723 ARHGAP33O14559 1287 aa11□□□□□ -0.65
CD46-218ENST00000496723 POTEEQ6S8J3 1075 aa11□□□□□ -0.65
CD46-218ENST00000496723 AXIN2Q9Y2T1 843 aa10.98□□□□□ -0.65
CD46-218ENST00000496723 CRISPLD2Q9H0B8 497 aa10.97□□□□□ -0.65
CD46-218ENST00000496723 PPP4R3BQ5MIZ7 849 aa10.96□□□□□ -0.65
CD46-218ENST00000496723 OXER1Q8TDS5 423 aa10.94□□□□□ -0.66
CD46-218ENST00000496723 TK2O00142 265 aa10.93□□□□□ -0.66
CD46-218ENST00000496723 PDE4AP27815 886 aa10.93□□□□□ -0.66
CD46-218ENST00000496723 GTPBP6O43824 516 aaPredicted RBP10.92□□□□□ -0.66
CD46-218ENST00000496723 ADGRD1Q6QNK2 874 aa10.92□□□□□ -0.66
CD46-218ENST00000496723 PPP1R15BQ5SWA1 713 aa10.91□□□□□ -0.66
CD46-218ENST00000496723 NCKAP5LQ9HCH0 1330 aa10.89□□□□□ -0.67
CD46-218ENST00000496723 KCNH8Q96L42 1107 aa10.89□□□□□ -0.67
CD46-218ENST00000496723 PSEN2P49810 448 aa10.86□□□□□ -0.67
CD46-218ENST00000496723 UPF1Q92900 1129 aaKnown RBP eCLIP10.86□□□□□ -0.67
CD46-218ENST00000496723 DMRTA1Q5VZB9 504 aa10.85□□□□□ -0.67
CD46-218ENST00000496723 HCSTQ9UBK5 93 aa10.85□□□□□ -0.67
CD46-218ENST00000496723 HRO43593 1189 aa10.84□□□□□ -0.67
CD46-218ENST00000496723 DCAF8L2P0C7V8 631 aa10.84□□□□□ -0.67
CD46-218ENST00000496723 DDX27Q96GQ7 796 aaKnown RBP10.83□□□□□ -0.68
CD46-218ENST00000496723 LARP6Q9BRS8 491 aaKnown RBP10.83□□□□□ -0.68
CD46-218ENST00000496723 ANO8Q9HCE9 1232 aaPredicted RBP10.83□□□□□ -0.68
CD46-218ENST00000496723 KCNK17Q96T54 332 aa10.82□□□□□ -0.68
CD46-218ENST00000496723 MFSD10Q14728 455 aa10.81□□□□□ -0.68
CD46-218ENST00000496723 ZNF454Q8N9F8 522 aa10.81□□□□□ -0.68
CD46-218ENST00000496723 BCL2L12Q9HB09 334 aa10.81□□□□□ -0.68
CD46-218ENST00000496723 AMER1Q5JTC6 1135 aaPredicted RBP10.8□□□□□ -0.68
CD46-218ENST00000496723 STAC3Q96MF2 364 aa10.8□□□□□ -0.68
CD46-218ENST00000496723 FOSBP53539 338 aa10.79□□□□□ -0.68
CD46-218ENST00000496723 RTN4Q9NQC3 1192 aaKnown RBP10.79□□□□□ -0.68
CD46-218ENST00000496723 SLC4A5Q9BY07 1137 aa10.78□□□□□ -0.68
CD46-218ENST00000496723 EVI5O60447 810 aa10.77□□□□□ -0.69
CD46-218ENST00000496723 JPH4Q96JJ6 628 aa10.77□□□□□ -0.69
CD46-218ENST00000496723 VPS9D1Q9Y2B5 631 aa10.77□□□□□ -0.69
CD46-218ENST00000496723 MAP3K9P80192 1104 aa10.76□□□□□ -0.69
CD46-218ENST00000496723 PTPREP23469 700 aa10.75□□□□□ -0.69
CD46-218ENST00000496723 ZDHHC16Q969W1 377 aa10.73□□□□□ -0.69
CD46-218ENST00000496723 PLA2G2EQ9NZK7 142 aa10.72□□□□□ -0.69
CD46-218ENST00000496723 KCTD12Q96CX2 325 aaKnown RBP10.7□□□□□ -0.7
CD46-218ENST00000496723 EMILIN3Q9NT22 766 aa10.7□□□□□ -0.7
CD46-218ENST00000496723 BHMG1C9JSJ3 638 aaPredicted RBP10.68□□□□□ -0.7
CD46-218ENST00000496723 CADPS2Q86UW7 1296 aa10.68□□□□□ -0.7
CD46-218ENST00000496723 ZBED2Q9BTP6 218 aa10.68□□□□□ -0.7
CD46-218ENST00000496723 ADAM33Q9BZ11 813 aa10.67□□□□□ -0.7
CD46-218ENST00000496723 BBXQ8WY36 941 aaPredicted RBP10.66□□□□□ -0.7
CD46-218ENST00000496723 CAMK2BQ13554 666 aa10.65□□□□□ -0.7
CD46-218ENST00000496723 FBXW7Q969H0 707 aa10.65□□□□□ -0.7
CD46-218ENST00000496723 PCDHGA10Q9Y5H3 936 aa10.64□□□□□ -0.71
CD46-218ENST00000496723 MRPL50Q8N5N7 158 aaKnown RBP10.63□□□□□ -0.71
CD46-218ENST00000496723 NBPF3Q9H094 633 aa10.63□□□□□ -0.71
CD46-218ENST00000496723 GOLGA8CPA6NN73 597 aa10.62□□□□□ -0.71
CD46-218ENST00000496723 PHF14O94880 888 aa10.62□□□□□ -0.71
CD46-218ENST00000496723 PPP1R3GB7ZBB8 358 aa10.61□□□□□ -0.71
CD46-218ENST00000496723 TYW1BQ6NUM6 668 aa10.61□□□□□ -0.71
CD46-218ENST00000496723 THSD4Q6ZMP0 1018 aa10.59□□□□□ -0.71
CD46-218ENST00000496723 PTPN5P54829 565 aa10.58□□□□□ -0.72
CD46-218ENST00000496723 WNT2BQ93097 391 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms