RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 VGFO15240 615 aaPredicted RBP13.05□□□□□ -0.32
SMC4-224ENST00000494612 PTGER2P43116 358 aa13.05□□□□□ -0.32
SMC4-224ENST00000494612 GPR153Q6NV75 609 aa13.05□□□□□ -0.32
SMC4-224ENST00000494612 ZFP91Q96JP5 570 aaPredicted RBP13.05□□□□□ -0.32
SMC4-224ENST00000494612 PHF8Q9UPP1 1060 aa13□□□□□ -0.33
SMC4-224ENST00000494612 ARSIQ5FYB1 569 aa12.99□□□□□ -0.33
SMC4-224ENST00000494612 MS4A4AQ96JQ5 239 aa12.99□□□□□ -0.33
SMC4-224ENST00000494612 ANKRD13DQ6ZTN6 518 aa12.97□□□□□ -0.33
SMC4-224ENST00000494612 PKD2Q13563 968 aa12.93□□□□□ -0.34
SMC4-224ENST00000494612 ZNF316A6NFI3 1004 aaPredicted RBP12.92□□□□□ -0.34
SMC4-224ENST00000494612 NLRP6P59044 892 aa12.92□□□□□ -0.34
SMC4-224ENST00000494612 ECM2O94769 699 aaPredicted RBP12.9□□□□□ -0.34
SMC4-224ENST00000494612 TAOK2Q9UL54 1235 aa12.9□□□□□ -0.34
SMC4-224ENST00000494612 BCL11BQ9C0K0 894 aaPredicted RBP12.89□□□□□ -0.35
SMC4-224ENST00000494612 KHSRPQ92945 711 aaKnown RBP eCLIP12.88□□□□□ -0.351e-8■■□□□ 14.5
SMC4-224ENST00000494612 LSM11P83369 360 aaKnown RBP eCLIP12.87□□□□□ -0.35
SMC4-224ENST00000494612 FBXO22Q8NEZ5 403 aa12.85□□□□□ -0.35
SMC4-224ENST00000494612 RGL2O15211 777 aa12.84□□□□□ -0.35
SMC4-224ENST00000494612 STK24Q9Y6E0 443 aa12.84□□□□□ -0.35
SMC4-224ENST00000494612 PBX2P40425 430 aa12.81□□□□□ -0.36
SMC4-224ENST00000494612 MFRPQ9BY79 579 aa12.81□□□□□ -0.36
SMC4-224ENST00000494612 STK25O00506 426 aa12.8□□□□□ -0.36
SMC4-224ENST00000494612 NUDT7P0C024 238 aa12.79□□□□□ -0.36
SMC4-224ENST00000494612 C2orf72A6NCS6 295 aa12.76□□□□□ -0.37
SMC4-224ENST00000494612 KIF3CO14782 793 aa12.74□□□□□ -0.37
SMC4-224ENST00000494612 LHX6Q9UPM6 363 aa12.73□□□□□ -0.37
SMC4-224ENST00000494612 AXIN2Q9Y2T1 843 aa12.72□□□□□ -0.37
SMC4-224ENST00000494612 PCDHGA4Q9Y5G9 962 aa12.72□□□□□ -0.37
SMC4-224ENST00000494612 HCSTQ9UBK5 93 aa12.71□□□□□ -0.37
SMC4-224ENST00000494612 SLC34A2O95436 690 aa12.7□□□□□ -0.38
SMC4-224ENST00000494612 TMC2Q8TDI7 906 aa12.7□□□□□ -0.38
SMC4-224ENST00000494612 PLA2G2EQ9NZK7 142 aa12.7□□□□□ -0.38
SMC4-224ENST00000494612 POTEEQ6S8J3 1075 aa12.66□□□□□ -0.38
SMC4-224ENST00000494612 PSDA5PKW4 1024 aaPredicted RBP12.65□□□□□ -0.38
SMC4-224ENST00000494612 ARHGAP33O14559 1287 aa12.63□□□□□ -0.39
SMC4-224ENST00000494612 ADGRD1Q6QNK2 874 aa12.63□□□□□ -0.39
SMC4-224ENST00000494612 PPP1R37O75864 691 aa12.6□□□□□ -0.39
SMC4-224ENST00000494612 HS6ST3Q8IZP7 471 aa12.57□□□□□ -0.4
SMC4-224ENST00000494612 TK2O00142 265 aa12.54□□□□□ -0.4
SMC4-224ENST00000494612 STAC3Q96MF2 364 aa12.54□□□□□ -0.4
SMC4-224ENST00000494612 PSEN2P49810 448 aa12.49□□□□□ -0.41
SMC4-224ENST00000494612 PPP4R3BQ5MIZ7 849 aa12.49□□□□□ -0.41
SMC4-224ENST00000494612 PTCD2Q8WV60 388 aaKnown RBP12.49□□□□□ -0.41
SMC4-224ENST00000494612 DNAJC5Q9H3Z4 198 aa12.49□□□□□ -0.41
SMC4-224ENST00000494612 HRO43593 1189 aa12.48□□□□□ -0.41
SMC4-224ENST00000494612 DMRTA1Q5VZB9 504 aa12.48□□□□□ -0.41
SMC4-224ENST00000494612 KCNH8Q96L42 1107 aa12.48□□□□□ -0.41
SMC4-224ENST00000494612 CHGAP10645 457 aaKnown RBP12.47□□□□□ -0.41
SMC4-224ENST00000494612 KCTD12Q96CX2 325 aaKnown RBP12.47□□□□□ -0.41
SMC4-224ENST00000494612 TBC1D12O60347 775 aa12.46□□□□□ -0.41
SMC4-224ENST00000494612 KDM4FA0A1W2PPD8 638 aa12.45□□□□□ -0.42
SMC4-224ENST00000494612 NKX1-1Q15270 411 aaPredicted RBP12.44□□□□□ -0.42
SMC4-224ENST00000494612 FOXK1P85037 733 aa12.43□□□□□ -0.42
SMC4-224ENST00000494612 PLPP6Q8IY26 295 aa12.43□□□□□ -0.42
SMC4-224ENST00000494612 KCNK17Q96T54 332 aa12.39□□□□□ -0.43
SMC4-224ENST00000494612 GPHNQ9NQX3 736 aaPredicted RBP12.38□□□□□ -0.43
SMC4-224ENST00000494612 PTPN5P54829 565 aa12.35□□□□□ -0.43
SMC4-224ENST00000494612 DSG2Q14126 1118 aa12.34□□□□□ -0.43
SMC4-224ENST00000494612 VPS9D1Q9Y2B5 631 aa12.32□□□□□ -0.44
SMC4-224ENST00000494612 RYDENQ9NUL5 291 aaKnown RBP12.3□□□□□ -0.44
SMC4-224ENST00000494612 RGS20O76081 388 aa12.29□□□□□ -0.44
SMC4-224ENST00000494612 ZNF454Q8N9F8 522 aa12.28□□□□□ -0.44
SMC4-224ENST00000494612 GOLGA8CPA6NN73 597 aa12.26□□□□□ -0.45
SMC4-224ENST00000494612 GTPBP6O43824 516 aaPredicted RBP12.25□□□□□ -0.45
SMC4-224ENST00000494612 IFFO2Q5TF58 517 aa12.25□□□□□ -0.45
SMC4-224ENST00000494612 CRISPLD2Q9H0B8 497 aa12.25□□□□□ -0.45
SMC4-224ENST00000494612 UPF1Q92900 1129 aaKnown RBP eCLIP12.24□□□□□ -0.45
SMC4-224ENST00000494612 SLC4A5Q9BY07 1137 aa12.24□□□□□ -0.45
SMC4-224ENST00000494612 IRX2Q9BZI1 471 aaPredicted RBP12.24□□□□□ -0.45
SMC4-224ENST00000494612 BCL2L12Q9HB09 334 aa12.24□□□□□ -0.45
SMC4-224ENST00000494612 OXER1Q8TDS5 423 aa12.23□□□□□ -0.45
SMC4-224ENST00000494612 PTPREP23469 700 aa12.22□□□□□ -0.45
SMC4-224ENST00000494612 THSD4Q6ZMP0 1018 aa12.22□□□□□ -0.45
SMC4-224ENST00000494612 MRPL50Q8N5N7 158 aaKnown RBP12.2□□□□□ -0.46
SMC4-224ENST00000494612 WNT2BQ93097 391 aa12.2□□□□□ -0.46
SMC4-224ENST00000494612 NCKAP5LQ9HCH0 1330 aa12.19□□□□□ -0.46
SMC4-224ENST00000494612 BHMG1C9JSJ3 638 aaPredicted RBP12.18□□□□□ -0.46
SMC4-224ENST00000494612 A0A0G2JS52 829 aa12.17□□□□□ -0.46
SMC4-224ENST00000494612 FOSBP53539 338 aa12.16□□□□□ -0.46
SMC4-224ENST00000494612 PDE4AP27815 886 aa12.15□□□□□ -0.46
SMC4-224ENST00000494612 PPP1R15BQ5SWA1 713 aa12.15□□□□□ -0.46
SMC4-224ENST00000494612 ZBED2Q9BTP6 218 aa12.15□□□□□ -0.46
SMC4-224ENST00000494612 NBPF3Q9H094 633 aa12.15□□□□□ -0.46
SMC4-224ENST00000494612 JPH4Q96JJ6 628 aa12.11□□□□□ -0.47
SMC4-224ENST00000494612 DCAF8L2P0C7V8 631 aa12.1□□□□□ -0.47
SMC4-224ENST00000494612 ZDHHC16Q969W1 377 aa12.1□□□□□ -0.47
SMC4-224ENST00000494612 EVI5O60447 810 aa12.07□□□□□ -0.48
SMC4-224ENST00000494612 MFSD10Q14728 455 aa12.07□□□□□ -0.48
SMC4-224ENST00000494612 LARP6Q9BRS8 491 aaKnown RBP12.07□□□□□ -0.48
SMC4-224ENST00000494612 ANO8Q9HCE9 1232 aaPredicted RBP12.07□□□□□ -0.48
SMC4-224ENST00000494612 ADAM33Q9BZ11 813 aa12.06□□□□□ -0.48
SMC4-224ENST00000494612 DDX27Q96GQ7 796 aaKnown RBP12.04□□□□□ -0.48
SMC4-224ENST00000494612 CADPS2Q86UW7 1296 aa12.03□□□□□ -0.48
SMC4-224ENST00000494612 ANKK1Q8NFD2 765 aa12.03□□□□□ -0.48
SMC4-224ENST00000494612 MAP3K9P80192 1104 aa12□□□□□ -0.49
SMC4-224ENST00000494612 RABGEF1Q9UJ41 708 aa12□□□□□ -0.49
SMC4-224ENST00000494612 PPP1R3GB7ZBB8 358 aa11.99□□□□□ -0.49
SMC4-224ENST00000494612 ITGBL1O95965 494 aaPredicted RBP11.98□□□□□ -0.49
SMC4-224ENST00000494612 EMILIN3Q9NT22 766 aa11.98□□□□□ -0.49
SMC4-224ENST00000494612 Q6ZNB5 142 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms