RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 TOP2AP11388 1531 aaKnown RBP24.48■■□□□ 1.51
COL27A1-207ENST00000494090 RALBP1Q15311 655 aa24.48■■□□□ 1.51
COL27A1-207ENST00000494090 CARMIL2Q6F5E8 1435 aa24.47■■□□□ 1.51
COL27A1-207ENST00000494090 SRPK2P78362 688 aaKnown RBP24.47■■□□□ 1.51
COL27A1-207ENST00000494090 FOXD1Q16676 465 aa24.47■■□□□ 1.51
COL27A1-207ENST00000494090 KCNJ4P48050 445 aa24.46■■□□□ 1.51
COL27A1-207ENST00000494090 GOLGA2Q08379 1002 aa24.45■■□□□ 1.51
COL27A1-207ENST00000494090 GOLGA6L6A8MZA4 724 aa24.45■■□□□ 1.5
COL27A1-207ENST00000494090 HSCBQ8IWL3 235 aa24.44■■□□□ 1.5
COL27A1-207ENST00000494090 DNTTIP2Q5QJE6 756 aaKnown RBP24.43■■□□□ 1.5
COL27A1-207ENST00000494090 NRDCO43847 1150 aa24.41■■□□□ 1.5
COL27A1-207ENST00000494090 RCAN3Q9UKA8 241 aa24.41■■□□□ 1.5
COL27A1-207ENST00000494090 ROCK2O75116 1388 aaKnown RBP24.4■■□□□ 1.5
COL27A1-207ENST00000494090 HDGFL2Q7Z4V5 671 aaPredicted RBP24.4■■□□□ 1.5
COL27A1-207ENST00000494090 ANKRD30AQ9BXX3 1397 aa24.39■■□□□ 1.5
COL27A1-207ENST00000494090 WIZO95785 1651 aa24.38■■□□□ 1.49
COL27A1-207ENST00000494090 MCCP23508 829 aa24.38■■□□□ 1.49
COL27A1-207ENST00000494090 RTF1Q92541 710 aaKnown RBP24.38■■□□□ 1.49
COL27A1-207ENST00000494090 TRHP20396 242 aaPredicted RBP24.38■■□□□ 1.49
COL27A1-207ENST00000494090 NAP1L5Q96NT1 182 aaPredicted RBP24.38■■□□□ 1.49
COL27A1-207ENST00000494090 NUP155O75694 1391 aa24.38■■□□□ 1.49
COL27A1-207ENST00000494090 TPRNQ4KMQ1 711 aa24.37■■□□□ 1.49
COL27A1-207ENST00000494090 CALD1Q05682 793 aaKnown RBP24.36■■□□□ 1.49
COL27A1-207ENST00000494090 CHMP4AQ9BY43 222 aa24.36■■□□□ 1.49
COL27A1-207ENST00000494090 TCERG1O14776 1098 aaKnown RBP24.36■■□□□ 1.49
COL27A1-207ENST00000494090 MLECQ14165 292 aa24.36■■□□□ 1.49
COL27A1-207ENST00000494090 DEKP35659 375 aaKnown RBP24.36■■□□□ 1.49
COL27A1-207ENST00000494090 RTN4Q9NQC3 1192 aaKnown RBP24.36■■□□□ 1.49
COL27A1-207ENST00000494090 L1TD1Q5T7N2 865 aaKnown RBP24.35■■□□□ 1.49
COL27A1-207ENST00000494090 PDS5BQ9NTI5 1447 aa24.34■■□□□ 1.49
COL27A1-207ENST00000494090 RAPGEF2Q9Y4G8 1499 aa24.34■■□□□ 1.49
COL27A1-207ENST00000494090 IPO8O15397 1037 aaKnown RBP24.33■■□□□ 1.49
COL27A1-207ENST00000494090 EFCAB2Q5VUJ9 269 aa24.32■■□□□ 1.48
COL27A1-207ENST00000494090 GOLGA6L4A6NEF3 574 aa24.31■■□□□ 1.48
COL27A1-207ENST00000494090 GGT6Q6P531 493 aa24.31■■□□□ 1.48
COL27A1-207ENST00000494090 L3MBTL2Q969R5 705 aa24.31■■□□□ 1.48
COL27A1-207ENST00000494090 TDRD9Q8NDG6 1382 aaKnown RBP24.3■■□□□ 1.48
COL27A1-207ENST00000494090 NAP1L2Q9ULW6 460 aaPredicted RBP24.29■■□□□ 1.48
COL27A1-207ENST00000494090 TSHZ2Q9NRE2 1034 aa24.28■■□□□ 1.48
COL27A1-207ENST00000494090 PLCB2Q00722 1185 aa24.27■■□□□ 1.48
COL27A1-207ENST00000494090 RWDD1Q9H446 243 aaPredicted RBP24.26■■□□□ 1.47
COL27A1-207ENST00000494090 SAFB2Q14151 953 aaKnown RBP eCLIP24.26■■□□□ 1.47
COL27A1-207ENST00000494090 FHOD3Q2V2M9 1422 aa24.25■■□□□ 1.47
COL27A1-207ENST00000494090 DHX57Q6P158 1386 aaKnown RBP24.24■■□□□ 1.47
COL27A1-207ENST00000494090 EIF3AQ14152 1382 aaKnown RBP24.24■■□□□ 1.47
COL27A1-207ENST00000494090 TULP1O00294 542 aaPredicted RBP24.24■■□□□ 1.47
COL27A1-207ENST00000494090 SOX12O15370 315 aa24.24■■□□□ 1.47
COL27A1-207ENST00000494090 PDE3BQ13370 1112 aa24.23■■□□□ 1.47
COL27A1-207ENST00000494090 U2AF1L5P0DN76 240 aaPredicted RBP24.22■■□□□ 1.47
COL27A1-207ENST00000494090 U2AF1Q01081 240 aaKnown RBP eCLIP24.22■■□□□ 1.47
COL27A1-207ENST00000494090 NLRP13Q86W25 1043 aa24.21■■□□□ 1.47
COL27A1-207ENST00000494090 SPRYD3Q8NCJ5 442 aa24.2■■□□□ 1.46
COL27A1-207ENST00000494090 STK26Q9P289 416 aa24.2■■□□□ 1.46
COL27A1-207ENST00000494090 CCDC18Q5T9S5 1454 aa24.2■■□□□ 1.46
COL27A1-207ENST00000494090 RSPH4AQ5TD94 716 aa24.19■■□□□ 1.46
COL27A1-207ENST00000494090 PMFBP1Q8TBY8 1022 aa24.18■■□□□ 1.46
COL27A1-207ENST00000494090 HDAC5Q9UQL6 1122 aa24.18■■□□□ 1.46
COL27A1-207ENST00000494090 PTMSP20962 102 aa24.17■■□□□ 1.46
COL27A1-207ENST00000494090 TAOK2Q9UL54 1235 aa24.17■■□□□ 1.46
COL27A1-207ENST00000494090 CADPSQ9ULU8 1353 aa24.17■■□□□ 1.46
COL27A1-207ENST00000494090 KIAA1211Q6ZU35 1233 aa24.16■■□□□ 1.46
COL27A1-207ENST00000494090 ITPRIPQ8IWB1 547 aa24.15■■□□□ 1.46
COL27A1-207ENST00000494090 IPO9Q96P70 1041 aaKnown RBP24.15■■□□□ 1.46
COL27A1-207ENST00000494090 PHLDB1Q86UU1 1377 aa24.14■■□□□ 1.46
COL27A1-207ENST00000494090 MSNP26038 577 aaKnown RBP24.14■■□□□ 1.45
COL27A1-207ENST00000494090 GBP4Q96PP9 640 aa24.14■■□□□ 1.45
COL27A1-207ENST00000494090 CSB-PGBD3P0DP91 1061 aa24.13■■□□□ 1.45
COL27A1-207ENST00000494090 KIF15Q9NS87 1388 aa24.12■■□□□ 1.45
COL27A1-207ENST00000494090 TERF2IPQ9NYB0 399 aa24.12■■□□□ 1.45
COL27A1-207ENST00000494090 CHAF1AQ13111 956 aaPredicted RBP24.12■■□□□ 1.45
COL27A1-207ENST00000494090 SPAG9O60271 1321 aaKnown RBP24.11■■□□□ 1.45
COL27A1-207ENST00000494090 PAK3O75914 559 aaPredicted RBP24.1■■□□□ 1.45
COL27A1-207ENST00000494090 HNRNPMP52272 730 aaKnown RBP eCLIP24.1■■□□□ 1.451e-6■■■□□ 17.7
COL27A1-207ENST00000494090 STK31Q9BXU1 1019 aa24.08■■□□□ 1.45
COL27A1-207ENST00000494090 GNL2Q13823 731 aaKnown RBP24.08■■□□□ 1.44
COL27A1-207ENST00000494090 MYBBP1AQ9BQG0 1328 aaKnown RBP24.08■■□□□ 1.44
COL27A1-207ENST00000494090 EID1Q9Y6B2 187 aa24.07■■□□□ 1.44
COL27A1-207ENST00000494090 RUSC2Q8N2Y8 1516 aa24.06■■□□□ 1.44
COL27A1-207ENST00000494090 HTATSF1O43719 755 aaKnown RBP24.06■■□□□ 1.44
COL27A1-207ENST00000494090 ATAD2BQ9ULI0 1458 aa24.06■■□□□ 1.44
COL27A1-207ENST00000494090 SLKQ9H2G2 1235 aaPredicted RBP24.06■■□□□ 1.44
COL27A1-207ENST00000494090 APBB1O00213 710 aa24.05■■□□□ 1.44
COL27A1-207ENST00000494090 SMARCA4P51532 1647 aa24.05■■□□□ 1.44
COL27A1-207ENST00000494090 KIF3BO15066 747 aa24.05■■□□□ 1.44
COL27A1-207ENST00000494090 SMC4Q9NTJ3 1288 aa24.04■■□□□ 1.44
COL27A1-207ENST00000494090 CENPJQ9HC77 1338 aaPredicted RBP24.04■■□□□ 1.44
COL27A1-207ENST00000494090 TMX4Q9H1E5 349 aaPredicted RBP24.04■■□□□ 1.44
COL27A1-207ENST00000494090 LMOD3Q0VAK6 560 aa24.03■■□□□ 1.44
COL27A1-207ENST00000494090 ISY1Q9ULR0 285 aaKnown RBP24.03■■□□□ 1.44
COL27A1-207ENST00000494090 HMMRO75330 724 aa24.02■■□□□ 1.44
COL27A1-207ENST00000494090 CCDC146Q8IYE0 955 aa24.01■■□□□ 1.43
COL27A1-207ENST00000494090 GPATCH3Q96I76 525 aa24.01■■□□□ 1.43
COL27A1-207ENST00000494090 PRKRIP1Q9H875 184 aaPredicted RBP24■■□□□ 1.43
COL27A1-207ENST00000494090 ST20-MTHFSA0A0A6YYL1 179 aa23.99■■□□□ 1.43
COL27A1-207ENST00000494090 MFAP1P55081 439 aaKnown RBP23.99■■□□□ 1.43
COL27A1-207ENST00000494090 ZBED9Q6R2W3 1325 aa23.97■■□□□ 1.43
COL27A1-207ENST00000494090 DRC7Q8IY82 874 aa23.97■■□□□ 1.43
COL27A1-207ENST00000494090 CCDC144AA2RUR9 1427 aa23.96■■□□□ 1.43
COL27A1-207ENST00000494090 GZF1Q9H116 711 aaPredicted RBP23.96■■□□□ 1.43
COL27A1-207ENST00000494090 WASHC2CQ9Y4E1 1318 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms