RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 FBXO22Q8NEZ5 403 aa13.82□□□□□ -0.2
SMC4-223ENST00000493695 ERBB3P21860 1342 aa13.8□□□□□ -0.2
SMC4-223ENST00000493695 HOXB1P14653 301 aaPredicted RBP13.78□□□□□ -0.2
SMC4-223ENST00000493695 POTEB3A0JP26 581 aa13.75□□□□□ -0.21
SMC4-223ENST00000493695 POTEBQ6S5H4 581 aa13.75□□□□□ -0.21
SMC4-223ENST00000493695 SPNS2Q8IVW8 549 aa13.73□□□□□ -0.21
SMC4-223ENST00000493695 VARS2Q5ST30 1063 aaKnown RBP13.7□□□□□ -0.22
SMC4-223ENST00000493695 ZSWIM6Q9HCJ5 1215 aa13.69□□□□□ -0.22
SMC4-223ENST00000493695 MMRN1Q13201 1228 aa13.68□□□□□ -0.22
SMC4-223ENST00000493695 CHGAP10645 457 aaKnown RBP13.67□□□□□ -0.22
SMC4-223ENST00000493695 C2orf72A6NCS6 295 aa13.66□□□□□ -0.22
SMC4-223ENST00000493695 ARSIQ5FYB1 569 aa13.66□□□□□ -0.22
SMC4-223ENST00000493695 TMC2Q8TDI7 906 aa13.66□□□□□ -0.22
SMC4-223ENST00000493695 KRTAP3-3Q9BYR6 98 aa13.65□□□□□ -0.22
SMC4-223ENST00000493695 KRTAP3-2Q9BYR7 98 aa13.65□□□□□ -0.22
SMC4-223ENST00000493695 GPR153Q6NV75 609 aa13.63□□□□□ -0.23
SMC4-223ENST00000493695 PPP1R37O75864 691 aa13.62□□□□□ -0.23
SMC4-223ENST00000493695 KHSRPQ92945 711 aaKnown RBP eCLIP13.61□□□□□ -0.235e-7■■■□□ 16.2
SMC4-223ENST00000493695 HS6ST3Q8IZP7 471 aa13.6□□□□□ -0.23
SMC4-223ENST00000493695 KIF3CO14782 793 aa13.55□□□□□ -0.24
SMC4-223ENST00000493695 DCAF8L2P0C7V8 631 aa13.55□□□□□ -0.24
SMC4-223ENST00000493695 NUDT7P0C024 238 aa13.53□□□□□ -0.24
SMC4-223ENST00000493695 ZNF687Q8N1G0 1237 aa13.51□□□□□ -0.25
SMC4-223ENST00000493695 ZNF316A6NFI3 1004 aaPredicted RBP13.5□□□□□ -0.25
SMC4-223ENST00000493695 PCDHGA4Q9Y5G9 962 aa13.47□□□□□ -0.25
SMC4-223ENST00000493695 ANKRD13DQ6ZTN6 518 aa13.46□□□□□ -0.25
SMC4-223ENST00000493695 RYDENQ9NUL5 291 aaKnown RBP13.42□□□□□ -0.26
SMC4-223ENST00000493695 LHX6Q9UPM6 363 aa13.42□□□□□ -0.26
SMC4-223ENST00000493695 SLC34A2O95436 690 aa13.41□□□□□ -0.26
SMC4-223ENST00000493695 PLPP6Q8IY26 295 aa13.41□□□□□ -0.26
SMC4-223ENST00000493695 NKX1-1Q15270 411 aaPredicted RBP13.4□□□□□ -0.26
SMC4-223ENST00000493695 RNF166Q96A37 237 aaPredicted RBP13.38□□□□□ -0.27
SMC4-223ENST00000493695 GPHNQ9NQX3 736 aaPredicted RBP13.38□□□□□ -0.27
SMC4-223ENST00000493695 MYT1LQ9UL68 1186 aa13.38□□□□□ -0.27
SMC4-223ENST00000493695 FOXK1P85037 733 aa13.36□□□□□ -0.27
SMC4-223ENST00000493695 DSG2Q14126 1118 aa13.36□□□□□ -0.27
SMC4-223ENST00000493695 AXIN2Q9Y2T1 843 aa13.34□□□□□ -0.27
SMC4-223ENST00000493695 TBC1D12O60347 775 aa13.33□□□□□ -0.28
SMC4-223ENST00000493695 LSM11P83369 360 aaKnown RBP eCLIP13.32□□□□□ -0.28
SMC4-223ENST00000493695 PTCD2Q8WV60 388 aaKnown RBP13.3□□□□□ -0.28
SMC4-223ENST00000493695 PBX2P40425 430 aa13.29□□□□□ -0.28
SMC4-223ENST00000493695 UPF1Q92900 1129 aaKnown RBP eCLIP13.29□□□□□ -0.28
SMC4-223ENST00000493695 DNAJC5Q9H3Z4 198 aa13.29□□□□□ -0.28
SMC4-223ENST00000493695 PSDA5PKW4 1024 aaPredicted RBP13.27□□□□□ -0.29
SMC4-223ENST00000493695 PTGER2P43116 358 aa13.27□□□□□ -0.29
SMC4-223ENST00000493695 PPP1R15BQ5SWA1 713 aa13.23□□□□□ -0.29
SMC4-223ENST00000493695 PDE4AP27815 886 aa13.22□□□□□ -0.29
SMC4-223ENST00000493695 PPP4R3BQ5MIZ7 849 aa13.22□□□□□ -0.29
SMC4-223ENST00000493695 ARHGAP33O14559 1287 aa13.21□□□□□ -0.29
SMC4-223ENST00000493695 GTPBP6O43824 516 aaPredicted RBP13.21□□□□□ -0.29
SMC4-223ENST00000493695 POTEEQ6S8J3 1075 aa13.21□□□□□ -0.29
SMC4-223ENST00000493695 LARP6Q9BRS8 491 aaKnown RBP13.19□□□□□ -0.3
SMC4-223ENST00000493695 CRISPLD2Q9H0B8 497 aa13.19□□□□□ -0.3
SMC4-223ENST00000493695 KCNH8Q96L42 1107 aa13.18□□□□□ -0.3
SMC4-223ENST00000493695 PSEN2P49810 448 aa13.17□□□□□ -0.3
SMC4-223ENST00000493695 NCKAP5LQ9HCH0 1330 aa13.16□□□□□ -0.3
SMC4-223ENST00000493695 KDM4FA0A1W2PPD8 638 aa13.15□□□□□ -0.3
SMC4-223ENST00000493695 ADGRD1Q6QNK2 874 aa13.15□□□□□ -0.3
SMC4-223ENST00000493695 STAC3Q96MF2 364 aa13.15□□□□□ -0.3
SMC4-223ENST00000493695 OXER1Q8TDS5 423 aa13.14□□□□□ -0.31
SMC4-223ENST00000493695 DDX27Q96GQ7 796 aaKnown RBP13.14□□□□□ -0.31
SMC4-223ENST00000493695 KCNK17Q96T54 332 aa13.14□□□□□ -0.31
SMC4-223ENST00000493695 ZNF454Q8N9F8 522 aa13.13□□□□□ -0.31
SMC4-223ENST00000493695 DMRTA1Q5VZB9 504 aa13.12□□□□□ -0.31
SMC4-223ENST00000493695 MAP3K9P80192 1104 aa13.08□□□□□ -0.32
SMC4-223ENST00000493695 EVI5O60447 810 aa13.05□□□□□ -0.32
SMC4-223ENST00000493695 TK2O00142 265 aa13.03□□□□□ -0.32
SMC4-223ENST00000493695 CADPS2Q86UW7 1296 aa13□□□□□ -0.33
SMC4-223ENST00000493695 HCSTQ9UBK5 93 aa13□□□□□ -0.33
SMC4-223ENST00000493695 PTPREP23469 700 aa12.99□□□□□ -0.33
SMC4-223ENST00000493695 KCTD12Q96CX2 325 aaKnown RBP12.99□□□□□ -0.33
SMC4-223ENST00000493695 FOSBP53539 338 aa12.97□□□□□ -0.33
SMC4-223ENST00000493695 MFSD10Q14728 455 aa12.97□□□□□ -0.33
SMC4-223ENST00000493695 BCL2L12Q9HB09 334 aa12.97□□□□□ -0.33
SMC4-223ENST00000493695 HRO43593 1189 aa12.96□□□□□ -0.33
SMC4-223ENST00000493695 BBXQ8WY36 941 aaPredicted RBP12.95□□□□□ -0.34
SMC4-223ENST00000493695 ZDHHC16Q969W1 377 aa12.95□□□□□ -0.34
SMC4-223ENST00000493695 JPH4Q96JJ6 628 aa12.95□□□□□ -0.34
SMC4-223ENST00000493695 EMILIN3Q9NT22 766 aa12.95□□□□□ -0.34
SMC4-223ENST00000493695 VPS9D1Q9Y2B5 631 aa12.95□□□□□ -0.34
SMC4-223ENST00000493695 ANO8Q9HCE9 1232 aaPredicted RBP12.94□□□□□ -0.34
SMC4-223ENST00000493695 GOLGA8CPA6NN73 597 aa12.92□□□□□ -0.34
SMC4-223ENST00000493695 ADAM33Q9BZ11 813 aa12.91□□□□□ -0.34
SMC4-223ENST00000493695 PLA2G2EQ9NZK7 142 aa12.91□□□□□ -0.34
SMC4-223ENST00000493695 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.91□□□□□ -0.34
SMC4-223ENST00000493695 PTPN5P54829 565 aa12.89□□□□□ -0.35
SMC4-223ENST00000493695 AMER1Q5JTC6 1135 aaPredicted RBP12.89□□□□□ -0.35
SMC4-223ENST00000493695 SPRYD3Q8NCJ5 442 aa12.87□□□□□ -0.35
SMC4-223ENST00000493695 MRPL50Q8N5N7 158 aaKnown RBP12.86□□□□□ -0.35
SMC4-223ENST00000493695 DPYSL4O14531 572 aa12.85□□□□□ -0.35
SMC4-223ENST00000493695 CFAP44Q96MT7 982 aa12.84□□□□□ -0.35
SMC4-223ENST00000493695 ZBED2Q9BTP6 218 aa12.84□□□□□ -0.35
SMC4-223ENST00000493695 PCDHGA10Q9Y5H3 936 aa12.84□□□□□ -0.35
SMC4-223ENST00000493695 WNT2BQ93097 391 aa12.82□□□□□ -0.36
SMC4-223ENST00000493695 SLC4A5Q9BY07 1137 aa12.82□□□□□ -0.36
SMC4-223ENST00000493695 NBPF3Q9H094 633 aa12.82□□□□□ -0.36
SMC4-223ENST00000493695 RTN4Q9NQC3 1192 aaKnown RBP12.82□□□□□ -0.36
SMC4-223ENST00000493695 TYW1BQ6NUM6 668 aa12.81□□□□□ -0.36
SMC4-223ENST00000493695 PAXIP1Q6ZW49 1069 aaPredicted RBP12.8□□□□□ -0.36
SMC4-223ENST00000493695 FBXW7Q969H0 707 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms