RNA–Protein interactions for RNA: ENST00000493207.1

RER1-208, Transcript of retention in endoplasmic reticulum sorting receptor 1, humanhuman

TSL 2

Gene RER1, Length 686 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RER1-208ENST00000493207 NCOA2Q15596 1464 aa26.39■■□□□ 1.82
RER1-208ENST00000493207 COL17A1Q9UMD9 1497 aaPredicted RBP26.39■■□□□ 1.82
RER1-208ENST00000493207 CCNB3Q8WWL7 1395 aa26.39■■□□□ 1.82
RER1-208ENST00000493207 PHLDB1Q86UU1 1377 aa26.37■■□□□ 1.81
RER1-208ENST00000493207 GPATCH8Q9UKJ3 1502 aaKnown RBP26.37■■□□□ 1.81
RER1-208ENST00000493207 AKNAQ7Z591 1439 aa26.37■■□□□ 1.81
RER1-208ENST00000493207 ITSN2Q9NZM3 1697 aa26.36■■□□□ 1.81
RER1-208ENST00000493207 EFCAB2Q5VUJ9 269 aa26.35■■□□□ 1.81
RER1-208ENST00000493207 ADGRL1O94910 1474 aa26.31■■□□□ 1.8
RER1-208ENST00000493207 CFDP1Q9UEE9 299 aaPredicted RBP26.28■■□□□ 1.8
RER1-208ENST00000493207 SAMD9LQ8IVG5 1584 aa26.27■■□□□ 1.8
RER1-208ENST00000493207 RICTORQ6R327 1708 aa26.26■■□□□ 1.79
RER1-208ENST00000493207 FRMPD1Q5SYB0 1578 aa26.26■■□□□ 1.79
RER1-208ENST00000493207 SCAPERQ9BY12 1400 aa26.26■■□□□ 1.79
RER1-208ENST00000493207 ZNF777Q9ULD5 760 aaPredicted RBP26.26■■□□□ 1.79
RER1-208ENST00000493207 DENND4BO75064 1496 aaPredicted RBP26.25■■□□□ 1.79
RER1-208ENST00000493207 RAPGEF3O95398 923 aa26.25■■□□□ 1.79
RER1-208ENST00000493207 ABCC1P33527 1531 aa26.24■■□□□ 1.79
RER1-208ENST00000493207 MYOM3Q5VTT5 1437 aa26.2■■□□□ 1.78
RER1-208ENST00000493207 POGZQ7Z3K3 1410 aa26.2■■□□□ 1.78
RER1-208ENST00000493207 PPARGC1BQ86YN6 1023 aaKnown RBP26.19■■□□□ 1.78
RER1-208ENST00000493207 SYCP2Q9BX26 1530 aa26.19■■□□□ 1.78
RER1-208ENST00000493207 ARHGEF12Q9NZN5 1544 aa26.19■■□□□ 1.78
RER1-208ENST00000493207 ZNF644Q9H582 1327 aaPredicted RBP26.16■■□□□ 1.78
RER1-208ENST00000493207 PLEKHH2Q8IVE3 1493 aa26.16■■□□□ 1.78
RER1-208ENST00000493207 CAMSAP2Q08AD1 1489 aa26.15■■□□□ 1.78
RER1-208ENST00000493207 ZNF518AQ6AHZ1 1483 aa26.15■■□□□ 1.78
RER1-208ENST00000493207 ZMYM4Q5VZL5 1548 aa26.13■■□□□ 1.77
RER1-208ENST00000493207 TRAPPC8Q9Y2L5 1435 aa26.13■■□□□ 1.77
RER1-208ENST00000493207 HNRNPMP52272 730 aaKnown RBP eCLIP26.12■■□□□ 1.771e-8■□□□□ 10.6
RER1-208ENST00000493207 MIA2Q96PC5 1412 aa26.12■■□□□ 1.77
RER1-208ENST00000493207 KIAA1107Q9UPP5 1409 aa26.12■■□□□ 1.77
RER1-208ENST00000493207 AFAP1Q8N556 730 aa26.11■■□□□ 1.77
RER1-208ENST00000493207 KDM5CP41229 1560 aa26.11■■□□□ 1.77
RER1-208ENST00000493207 PTPN23Q9H3S7 1636 aa26.08■■□□□ 1.77
RER1-208ENST00000493207 FGD6Q6ZV73 1430 aa26.07■■□□□ 1.76
RER1-208ENST00000493207 HECW2Q9P2P5 1572 aa26.06■■□□□ 1.76
RER1-208ENST00000493207 MBD5Q9P267 1494 aa26.05■■□□□ 1.76
RER1-208ENST00000493207 ZFYVE16Q7Z3T8 1539 aa26.05■■□□□ 1.76
RER1-208ENST00000493207 ARHGEF40Q8TER5 1519 aa26.05■■□□□ 1.76
RER1-208ENST00000493207 MAGI2Q86UL8 1455 aa26.04■■□□□ 1.76
RER1-208ENST00000493207 YEATS2Q9ULM3 1422 aa26.02■■□□□ 1.76
RER1-208ENST00000493207 ARHGEF5Q12774 1597 aa26.01■■□□□ 1.75
RER1-208ENST00000493207 MYT1LQ9UL68 1186 aa26.01■■□□□ 1.75
RER1-208ENST00000493207 TCOF1Q13428 1488 aaKnown RBP26■■□□□ 1.75
RER1-208ENST00000493207 CCDC141Q6ZP82 1450 aa26■■□□□ 1.75
RER1-208ENST00000493207 KIDINS220Q9ULH0 1771 aa26■■□□□ 1.75
RER1-208ENST00000493207 MLH3Q9UHC1 1453 aa25.99■■□□□ 1.75
RER1-208ENST00000493207 INO80Q9ULG1 1556 aaPredicted RBP25.98■■□□□ 1.75
RER1-208ENST00000493207 SPAG9O60271 1321 aaKnown RBP25.97■■□□□ 1.75
RER1-208ENST00000493207 ABCA6Q8N139 1617 aa25.97■■□□□ 1.75
RER1-208ENST00000493207 ATP7AQ04656 1500 aa25.96■■□□□ 1.75
RER1-208ENST00000493207 DIP2CQ9Y2E4 1556 aa25.95■■□□□ 1.75
RER1-208ENST00000493207 RSPH4AQ5TD94 716 aa25.95■■□□□ 1.74
RER1-208ENST00000493207 CROCC2H7BZ55 1655 aa25.93■■□□□ 1.74
RER1-208ENST00000493207 FAM50AQ14320 339 aaKnown RBP25.92■■□□□ 1.74
RER1-208ENST00000493207 DNMT1P26358 1616 aaKnown RBP25.92■■□□□ 1.74
RER1-208ENST00000493207 ATP10AO60312 1499 aa25.91■■□□□ 1.74
RER1-208ENST00000493207 SIGLEC1Q9BZZ2 1709 aa25.91■■□□□ 1.74
RER1-208ENST00000493207 C9orf84Q5VXU9 1444 aa25.89■■□□□ 1.74
RER1-208ENST00000493207 TSPY4P0CV99 314 aa25.88■■□□□ 1.73
RER1-208ENST00000493207 TSPY10P0CW01 314 aa25.88■■□□□ 1.73
RER1-208ENST00000493207 RTEL1-TNFRSF6BF6WH68 1400 aa25.88■■□□□ 1.73
RER1-208ENST00000493207 MAST1Q9Y2H9 1570 aa25.87■■□□□ 1.73
RER1-208ENST00000493207 ABCC5O15440 1437 aa25.87■■□□□ 1.73
RER1-208ENST00000493207 DAPK1P53355 1430 aa25.87■■□□□ 1.73
RER1-208ENST00000493207 ADGBQ8N7X0 1667 aa25.85■■□□□ 1.73
RER1-208ENST00000493207 REREQ9P2R6 1566 aa25.84■■□□□ 1.73
RER1-208ENST00000493207 ARID4BQ4LE39 1312 aaPredicted RBP25.84■■□□□ 1.73
RER1-208ENST00000493207 SHANK2Q9UPX8 1470 aa25.83■■□□□ 1.73
RER1-208ENST00000493207 RRBP1Q9P2E9 1410 aaKnown RBP25.82■■□□□ 1.72
RER1-208ENST00000493207 BCORL1Q5H9F3 1711 aa25.8■■□□□ 1.72
RER1-208ENST00000493207 PLXNC1O60486 1568 aa25.79■■□□□ 1.72
RER1-208ENST00000493207 A2MP01023 1474 aa25.79■■□□□ 1.72
RER1-208ENST00000493207 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.78■■□□□ 1.724e-10■■■■■ 27
RER1-208ENST00000493207 CHIC2Q9UKJ5 165 aa25.75■■□□□ 1.71
RER1-208ENST00000493207 AGLP35573 1532 aa25.74■■□□□ 1.71
RER1-208ENST00000493207 KDM4FA0A1W2PPD8 638 aa25.73■■□□□ 1.71
RER1-208ENST00000493207 ITGAEP38570 1179 aa25.72■■□□□ 1.71
RER1-208ENST00000493207 PTPRKQ15262 1439 aa25.71■■□□□ 1.71
RER1-208ENST00000493207 DHX29Q7Z478 1369 aaKnown RBP25.71■■□□□ 1.71
RER1-208ENST00000493207 ADAMTSL3P82987 1691 aa25.71■■□□□ 1.71
RER1-208ENST00000493207 MLECQ14165 292 aa25.71■■□□□ 1.71
RER1-208ENST00000493207 ANKRD30AQ9BXX3 1397 aa25.69■■□□□ 1.7
RER1-208ENST00000493207 ADGRL2O95490 1459 aa25.68■■□□□ 1.7
RER1-208ENST00000493207 RRP7BPQ9NSQ0 103 aa25.68■■□□□ 1.7
RER1-208ENST00000493207 KIF15Q9NS87 1388 aa25.68■■□□□ 1.7
RER1-208ENST00000493207 DUOX2Q9NRD8 1548 aa25.68■■□□□ 1.7
RER1-208ENST00000493207 MADDQ8WXG6 1647 aa25.67■■□□□ 1.7
RER1-208ENST00000493207 FER1L4A9Z1Z3 1794 aa25.67■■□□□ 1.7
RER1-208ENST00000493207 NCOA1Q15788 1441 aa25.66■■□□□ 1.7
RER1-208ENST00000493207 RIMS1Q86UR5 1692 aaKnown RBP25.63■■□□□ 1.69
RER1-208ENST00000493207 EIF2AK4Q9P2K8 1649 aaKnown RBP25.63■■□□□ 1.69
RER1-208ENST00000493207 KIF3BO15066 747 aa25.6■■□□□ 1.69
RER1-208ENST00000493207 ROCK1Q13464 1354 aa25.59■■□□□ 1.69
RER1-208ENST00000493207 ERBINQ96RT1 1412 aa25.59■■□□□ 1.69
RER1-208ENST00000493207 GGT6Q6P531 493 aa25.58■■□□□ 1.69
RER1-208ENST00000493207 RNF17Q9BXT8 1623 aaKnown RBP25.56■■□□□ 1.68
RER1-208ENST00000493207 PTPRMP28827 1452 aa25.53■■□□□ 1.68
RER1-208ENST00000493207 CLTCQ00610 1675 aaKnown RBP25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms